DFT studies

DFT 研究
  • 文章类型: Journal Article
    研究表明姜黄素的安全性和有效性,引起人们对其用于治疗和预防各种人类疾病的兴趣。当前的研究旨在使用SwissADME和密度泛函理论(DFT)方法预测甲基取代的姜黄素衍生物(BL1至BL4)的阻力能力。研究的姜黄素衍生物大多遵守Lipinski的5条规则,具有包括MW在内的分子特性,F.Csp3,nHBA,nHBD,和TPSA落在可接受的限度内。该化合物表现出高亲脂性而水溶性差。药代动力学评估显示良好的胃肠道吸收和血脑屏障渗透,而没有一个被确定为P-糖蛋白的底物,然而,揭示了对各种细胞色素P450酶的抑制作用。此外,所有衍生物均表现出一致的生物利用度评分为0.55.同样,姜黄素衍生物的化合物的DFT计算在B3LYP/6-311G**水平下进行,以预测然后评估生物活性的关键电子特性。因此,由于具有最大的能隙,BL4分子(ΔEgap=4.105eV)将比其他分子更喜欢与外部分子系统相互作用。ΔNmax(2.328eV)和Δεback-donat。(-0.446eV)分数暗示BL1将具有更多的电荷转移能力,并且在化合物中通过回授具有最低的稳定性。总之,衍生物(BL1至BL4)表现出强大的外在治疗特性,因此有资格进行进一步的体外和体内研究。
    Research suggests curcumin\'s safety and efficacy, prompting interest in its use for treating and preventing various human diseases. The current study aimed to predict drag ability of methyl substituted curcumin derivatives (BL1 to BL4) using SwissADME and Density Functional Theory (DFT) approaches. The curcumin derivatives investigated mostly adhere to Lipinski\'s rule of five, with molecular properties including MW, F. Csp3, nHBA, nHBD, and TPSA falling within acceptable limits. The compounds demonstrating high lipophilicity while poor water solubility. The pharmacokinetic evaluation revealed favorable gastrointestinal absorption and blood-brain barrier permeation while none were identified as substrates for P-glycoprotein, however, revealed inhibitory actions against various cytochrome P450 enzymes. Additionally, all derivatives exhibited a consistent bioavailability score of 0.55. Similarly, the DFT computations of the compounds of the curcumin derivatives were conducted at B3LYP/6-311 G** level to predict and then assess the key electronic characteristics underlying the bioactivity. Accordingly, the BL4 molecule (ΔEgap= 4.105 eV) would prefer to interact with the external molecular system more than the other molecules due to having the biggest energy gap. The ΔNmax (2.328 eV) and Δεback-donat. (-0.446 eV) scores implied that BL1 would have more charge transfer capability and the lowest stability via back donation among the compounds. In short, the derivative (BL1 to BL4) exhibited strong extrinsic therapeutic properties and therefore stand eligible for further in vitro and in vivo studies.
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  • 文章类型: Journal Article
    氢是未来的燃料,有可能在多种应用中取代传统的化石燃料。生产纯氢而没有碳排放的最快和最有效的方法是水电解。由于氧气和氢气析出的动力学缓慢,开发高活性电催化剂至关重要。这限制了贵金属在水分解中的使用。异质结构的界面工程引起了人们对提高电荷转移效率和优化吸附/解吸能量学的广泛兴趣。RuO2和MgFe-LDH之间内置电场的出现提高了水分解反应的催化效率。然而,基于LDH的材料具有较差的导电性,需要通过集成RuO2/MgFe-LDH来设计1D材料,以通过大表面积和高电子电导率来增强催化性能。实验结果表明,在OER(1mKOH)和HER(0.5mH2SO4)反应中,RuO2/MgFe-LDH/Fiber异质结构的过电势较低(在10mAcm-2时为273和122mV)和显着的稳定性(60h)。密度泛函理论(DFT)揭示了RuO2/MgFe-LDH界面的协同机制,导致OER中催化活性增强和氢原子吸附能提高,从而促进HER催化。
    Hydrogen is a fuel of the future that has the potential to replace conventional fossil fuels in several applications. The quickest and most effective method of producing pure hydrogen with no carbon emissions is water electrolysis. Developing highly active electrocatalysts is crucial due to the slow kinetics of oxygen and hydrogen evolution, which limit the usage of precious metals in water splitting. Interfacial engineering of heterostructures has sparked widespread interest in improving charge transfer efficiency and optimizing adsorption/desorption energetics. The emergence of a built-in-electric field between RuO2 and MgFe-LDH improves the catalytic efficiency toward water splitting reaction. However, LDH-based materials suffer from poor conductivity, necessitating the design of 1D materials by integration of RuO2/ MgFe-LDH to enhance catalytic properties through large surface areas and high electronic conductivity. Experimental results demonstrate lower overpotentials (273 and 122 mV at 10 mA cm-2) and remarkable stability (60 h) for the RuO2/MgFe-LDH/Fiber heterostructure in OER (1 m KOH) and HER (0.5 m H2SO4) reactions. Density functional theory (DFT) unveils a synergistic mechanism at the RuO2/MgFe-LDH interface, leading to enhanced catalytic activity in OER and improved adsorption energy for hydrogen atoms, thereby facilitating HER catalysis.
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  • 文章类型: Journal Article
    纺织品毒性合成染料,具有复杂的芳香结构,从各个分支排放到废水中。为了解决这个问题,在本文中,吸附过程被用作去除水中染料污染物的一种有吸引力的方法。进行了前所未有的综合实验研究,伴随DFT-B3LYP/6-31G的理论模拟(d,P)理论水平,以研究单个MaxilonBlueGRL(MxB)染料或其与MG(孔雀石绿)染料的混合物如何与吸附剂相互作用,并将获得的结果与通过实验获得的数据进行比较。完整的几何形状优化揭示了染料在Al2O3表面的物理吸附。非线性光学性质(NLO)结果强调,复杂的MG-Al2O3-MxB是在光应用中非常有前途的材料,与吸附的唯一染料体系相比,吸附的二元体系在能量上更有利。(MxB)染料在γ-Al2O3上的吸附实验结果证实,染料浓度为100ppm时,吸附量达到98%以上的最佳条件,pH值10,吸附剂含量0.05g,和平衡时间只有20分钟。动力学和等温研究表明,吸附符合伪二阶和Freundlich等温模型,分别。MxB和MG染料的混合物的去除效率最高,但随着它们中任何一种的百分比的增加而没有明显变化。证明了唯一染料和二元染料相互作用机理的细节。
    Textile-toxic synthetic dyes, which possess complex aromatic structures, are emitted into wastewater from various branches. To address this issue, the adsorption process was applied as an attractive method for the removal of dye contaminants from water in this article. An unprecedented integrated experimental study has been carried out, accompanied by theoretical simulations at the DFT-B3LYP/6-31G (d,P) level of theory to investigate how single Maxilon Blue GRL (MxB) dye or and its mixture with MG (Malachite Green) dyes interact with the adsorbent and compare the obtained results with the data obtained through experimentation. The full geometry optimization revealed the physical adsorption of dyes on the Al2O3 surface. Non-linear optical properties (NLO) results emphasized that the complex MG-Al2O3-MxB is a highly promising material in photo-applications, and the adsorbed binary system is energetically more favorable compared to the adsorbed sole dye system. The experimental results for (MxB) dye adsorption onto γ-Al2O3 affirmed that the optimum conditions to get more than 98% uptake were at dye concentration 100 ppm, pH 10, adsorbent content 0.05 g, and equilibrium time only 20 min. The kinetic and isothermal studies revealed that the adsorption accepted with the pseudo-second-order and Freundlich isotherm model, respectively. The removal efficiency of the mixture of MxB and MG dyes was the highest but did not change clearly with increasing the % of any of them. The details of the interaction mechanisms of the sole and binary dyes were proven.
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  • 文章类型: Journal Article
    癌症是广泛分类的疾病,其可由于未知原因的异常细胞增殖而影响任何器官或身体组织。许多现有的化疗药物具有高毒性并且几乎没有选择性。此外,它们导致药物抵抗的发展。因此,开发具有最小副作用和良好选择性的定制化疗药物对于癌症治疗至关重要。2-(1H)-喹唑啉酮是重要的支架材料之一,抗癌活性是该类材料中突出的生物学活性之一。在这里,我们报告了新型的富含酰胺的2-(1H)-喹唑啉酮衍生物(7a-j)及其凋亡活性,并借助MTT分析方法对四种人类癌细胞系:PC3(前列腺癌),DU-145(前列腺癌),A549(肺癌),和MCF7(乳腺癌)。与依托泊苷相比,每种合成的测试化合物(7a-j)表现出中等至优异的活性。新的酰胺衍生物(7a-j)的IC50值从0.07±0.0061μM变化到10.8±0.69μM。而阳性对照,依托泊苷,表现出1.97±0.45μM至3.08±0.135μM的范围。在新的酰胺衍生物(7a-j)中,特别是,7i和7j显示针对MCF7的强凋亡活性;7h显示针对PC3,7g显示针对DU-145。测试化合物(7a-j)与EGFR酪氨酸激酶结构域(PDBID:1M17)蛋白的分子对接研究提供了每种测试化合物(7a-j)的显著对接评分(-9.00至-9.67kcal/mol)。此外,DFT研究和MD模拟验证了分子对接的预测。根据ADME分析的结果,对于所有测试化合物,人的口服吸收预计高于85%。
    Cancer is a broad classification of diseases that can affect any organ or body tissue due to aberrant cellular proliferation for unknown reasons. Many present chemotherapeutic drugs are highly toxic and have little selectivity. Additionally, they lead to the development of medication resistance. Therefore, developing tailored chemotherapeutic drugs with minimal side effects and good selectivity is crucial for cancer treatment. 2-(1H)-Quinazolinone is one of the vital scaffold and anticancer activity is one of the prominent biological activities of this class. Here we report the novel set of amide-enriched 2-(1H)-quinazolinone derivatives (7a-j) and their apoptotic activity with the help of MTT assay method against four human cancer cell lines: PC3 (prostate cancer), DU-145 (prostate cancer), A549 (lung cancer), and MCF7 (breast cancer). When compared to etoposide, every synthetic test compound (7a-j) exhibited moderate to excellent activity. The IC50 values of the new amide derivatives (7a-j) varied from 0.07 ± 0.0061 μM to 10.8 ± 0.69 μM. While the positive control, etoposide, exhibited 1.97 ± 0.45 μM to 3.08 ± 0.135 μM range. Among the novel amide derivatives (7a-j), in particular, 7i and 7j showed strong apoptotic activity against MCF7; 7h showed against PC3, and 7g showed against DU-145. Molecular docking studies of test compounds (7a-j) with the EGFR tyrosine kinase domain (PDB ID: 1M17) protein provided the significant docking scores for each test compound (7a-j) (-9.00 to -9.67 kcal/mol). Additionally, DFT investigations and MD simulations validated the predictions of molecular docking. According to the findings of the ADME analysis, oral absorption by humans is anticipated to be higher than 85 % for all test compounds.
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  • 文章类型: Journal Article
    我们介绍了四种新席夫碱的设计和合成。,两酚噻嗪和香豆素衍生物。结构是基于FT-IR提出的,1HNMR,13CNMR和质谱数据。光物理,对所有化合物进行了溶剂化和电化学研究。此外,进行了密度泛函理论(DFT)等理论研究,以更好地了解化合物的分子内电荷转移性质和电子结构。从DFT研究获得的HOMO-LUMO能隙与从吸收阈值波长计算出的能隙之间注意到良好的一致性。所有化合物都显示出在6345-11,405cm-1范围内的斯托克斯位移。这些发现表明,新的席夫碱可以被认为是用于开发OLED的有吸引力的候选者,有机电子器件和光电器件。测试新合成的化合物的生物活性。与传统标准相比,没食子酸和吲哚美辛,席夫碱表现出更好的抗氧化和抗炎活性,分别。
    We present the design and synthesis of four new schiff bases viz., two each of phenothiazine and coumarin derivatives. The structures were proposed based on FT-IR, 1H NMR, 13C NMR and mass spectral data. The photophysical, solvatochromic and electrochemical studies of all the compounds were carried out. Furthermore, theoretical studies such as density functional theory (DFT) were carried out to gain a better understanding of the compounds\' intramolecular charge transfer properties and electronic structures. Good agreement was noticed between the HOMO-LUMO energy gap obtained from DFT studies and that calculated from absorption threshold wavelengths. All the compounds showed Stokes shifts in the range of 6345-11,405 cm-1. These findings showed that the new schiff bases could be considered as attractive candidates for use in the development of OLEDs, organic electrical devices and optoelectronic devices. Newly synthesized compounds were tested for biological activities. When compared to conventional standards, gallic acid and indomethacin, the schiff bases showed better antioxidant and antiinflammatory activities, respectively.
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  • 文章类型: Journal Article
    两个被三个和四个苯基内消旋取代的Ni(II)卟啉的氧化偶联反应,Ni(II)5,10,15-(三苯基)卟啉(NiPh3P)和Ni(II)5,10,15,20-(四苯基)卟啉(NiPh4P),在氧化化学气相沉积(OCVD)工艺中进行了研究。不考虑内消旋取代基的数量,高分辨率质谱证明了包含多达五个卟啉单元的寡聚物种的形成。oCVD膜的UV-Vis-NIR和XPS分析强调了分子间偶联反应与衬底温度的强烈依赖性。具体来说,较高的衬底温度导致价带最大值的降低和带隙的减小。与它们的升华对应物相比,共轭聚合物组件的形成导致电导率增加。然而,电催化测量显示水氧化起始过电位(pNiPh3P为308mV,pNiPh4P为343mV)相对高于从Ni(II)5,15-(二苯基)卟啉(pNiPh2P)测量的oCVD膜的起始过电位,即283mV。尽管DFT和比较的oCVD研究表明,当与四中取代的卟啉反应时,会形成涉及b-b键的直接融合的卟啉,本研究结果强调,多重直接融合(b-b/meso-meso/b-b或meso-b/b-meso)对于基于Ni(II)卟啉的共轭聚合物是必不可少的,以实现双核自由基氧偶联操作机制在低超电势和持久的催化活性下进行水氧化。
    The oxidative coupling reaction of two Ni(II) porphyrins meso-substituted with three and four phenyl groups, Ni(II) 5,10,15-(triphenyl)porphyrin (NiPh3P) and Ni(II) 5,10,15,20-(tetraphenyl)porphyrin (NiPh4P) respectively, was investigated in a oxidative chemical vapor deposition (oCVD) process. Irrespective of the number of meso-substituents, high-resolution mass spectrometry evidences the formation of oligomeric species containing up to five porphyrin units. UV-Vis-NIR and XPS analyses of the oCVD films highlighted a strong dependence of the intermolecular coupling reaction with the substrate temperature. Specifically, higher substrate temperatures yield lowering of valence band maxima and reduction of the band gap. The formation of conjugated polymeric assemblies results in increased conductivities as compared to their sublimed counterparts. Yet, electrocatalytic measurements exhibit water oxidation onset overpotentials (308 mV for pNiPh3P and 343 mV for pNiPh4P) comparatively higher than the onset overpotential measured for the oCVD film from Ni(II) 5,15-(diphenyl)porphyrin (pNiPh2P), i. e. 283 mV. Although DFT and comparative oCVD studies suggest the formation of directly fused porphyrins involving \'phenyl-mediated\' and β-β linkages when reacting tetra-meso-substituted porphyrins, the present findings highlight that multiple direct fusion (β-β/meso-meso/β-β or meso-β/β-meso) is essential for Ni(II) porphyrin-based conjugated polymers to enable a dinuclear radical oxo-coupling operating mechanism for water oxidation at low overpotential and durable catalytic activity.
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  • 文章类型: Journal Article
    在这项研究中,通过实验和理论相结合的方法研究了铅(Pb)掺杂对氧化钨(WO3)光电阳极的光电化学(PEC)水分解性能的影响。水热合成了Pb掺杂的WO3纳米结构薄膜,并进行了广泛的表征以研究它们的形态,带边,光学和光电化学性质。掺杂Pb的WO3通过降低电荷转移电阻而表现出有效的载流子密度和电荷分离。0.96at%Pb掺杂在1.23V与RHE除了产生高达86%和>90%的电荷分离和法拉第效率外,分别。在掺杂Pb时,还观察到费米能级向导带的偏移。此外,密度泛函理论(DFT)模拟证明了Pb掺杂后状态密度和带隙的变化,在WO3的表面和本体性质方面表现出有利的变化。
    In this study, the impact of lead (Pb) doping on the photoelectrochemical (PEC) water splitting performance of tungsten oxide (WO3) photoanodes was investigated through a combination of experimental and theoretical approaches. Pb-doped WO3 nanostructured thin films were synthesized hydrothermally, and extensive characterizations were conducted to study their morphologies, band edge, optical and photoelectrochemical properties. Pb-doped WO3 exhibited efficient carrier density and charge separations by reducing the charge transfer resistance. The 0.96 at% Pb doping shows a record photocurrent of ∼ 1.49 mAcm-2 and ∼ 3.44 mAcm-2 (with the hole scavenger) at 1.23 V vs. RHE besides yielding a high charge separation and Faradaic efficiencies of ∼ 86 % and > 90 %, respectively. A shift in the Fermi level towards the conduction band was also observed upon the Pb doping. Additionally, density functional theory (DFT) simulations demonstrated the changes in the density of states and bandgap upon Pb doping, exhibiting favorable changes in the surface and bulk properties of WO3.
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  • 文章类型: Journal Article
    通过在室温和露天使用CuI/DMAP催化体系,已经建立了一种有效且实用的7-氮杂吲哚的N-炔基化方法。这种简单的方案已成功地用于合成广泛的N-炔化7-氮杂吲哚,收率良好。此外,这种方法非常适合于大规模的N-炔基化反应。将设计的N-炔化7-氮杂吲哚进一步进行Cu-/Ir催化的炔-叠氮化物环加成(CuAAC/IrAAC)或“点击”反应,以快速合成1,4-/1,5二取代的1,2,3-三唑修饰的7-氮杂吲哚。基于密度泛函理论(DFT)计算和紫外-可见(UV)光谱研究的机理研究表明,CuI和DMAP组合形成了[CuII(DMAP)2I2]物种,充当活性催化剂。DFT方法用于评估有机金属在源自[CuII(DMAP)2I2]络合物的C-N键形成途径中的活力。我们期望新设计的Cu/DMAP/炔烃系统将为Cu催化转化领域提供有价值的见解。
    An efficient and practical method for the N-alkynylation of 7-azaindoles has been established by using CuI/DMAP catalytic system at room temperature and in open air. This simple protocol has been successfully employed in the synthesis of a wide range of N-alkynylated 7-azaindoles with good yields. Also, this approach is well-suited for large-scale N-alkynylation reactions. The designed N-alkynylated 7-azaindoles were further subjected to Cu-/Ir-catalyzed alkyne-azide cycloaddition (CuAAC/IrAAC) or \"click\" reaction for the rapid synthesis of 1,4-/1,5 disubstituted 1,2,3-triazole decorated 7-azaindoles. A mechanistic study based on density functional theory (DFT) calculations and ultraviolet-visible (UV) spectroscopic studies revealed that the CuI and DMAP combination formed a [CuII(DMAP)2I2] species, which acts as an active catalyst. The DFT method was used to assess the energetic viability of an organometallic in the C-N bond formation pathway originating from the [CuII(DMAP)2I2] complex. We expect that the newly designed Cu/DMAP/alkyne system will offer valuable insights into the field of Cu-catalyzed transformations.
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  • 文章类型: Journal Article
    我们报道了在叔丁基过氧化氢(TBHP)和1-甲基咪唑作为氧化剂和碱的存在下,用未活化的环烷烃作为烷基化剂,通过Cu(II)催化苯乙烯合成β-二取代酮。已知β-二取代的酮是通过使用昂贵的Ru/Ir配合物合成的,或低成本金属络合物(例如,Fe,Mn)与醛等活化物质,酸,酒精,或邻苯二甲酰亚胺衍生物作为烷化剂,然而,使用未活化的环烷烃直接作为烷化剂仍然具有挑战性。在这种方法中,广泛的脂肪族C-H底物以及各种烯属芳烃和杂芳烃(35种底物,包括14种新底物)具有良好的耐受性。Hammett分析进一步揭示了烯烃部分的替代效应对整体机理的影响。此外,受控实验,动力学同位素效应研究,和理论计算(DFT)使我们能够更深入地了解这种新的简单和原子经济方法的机械复杂性。
    We report the Cu(II) catalyzed synthesis of β-disubstituted ketones from styrene via oxo-alkylation with unactivated cycloalkanes as the alkylating agent in presence of tert-butylhydroperoxide (TBHP) and 1-methylimidazole as oxidant and base respectively. β-disubstituted ketones are known to be synthesized by using either expensive Ru/Ir complexes, or low-cost metal complexes (e. g., Fe, Mn) with activated species like aldehyde, acid, alcohol, or phthalimide derivatives as the alkylating agent, however, use of unactivated cycloalkanes directly as the alkylating agent remains challenging. A wide range of aliphatic C-H substrates as well as various olefinic arenes and heteroarene (35 substrates including 14 new substrates) are well-tolerated in this method. Hammett analysis shed more light on the substitution effect in the olefinic part on the overall mechanism. Furthermore, the controlled experiments, kinetic isotope effect study, and theoretical calculations (DFT) enable us to gain deeper insight of mechanistic intricacies of this new simple and atom-economic methodology.
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  • 文章类型: Journal Article
    药用植物是负责治愈或减轻各种疾病的活性化学成分的主要来源。为了发现新的,安全,和有效的候选药物,天然产物的分离和筛选是必不可少的。在目前的研究工作中,lapachol是从Fernandoaadenophylla中分离出来的,然后通过分子对接评估抗炎作用。使用体外(HRBC测定)和体内(二甲苯诱导的耳水肿)实验模型测试分离的化合物的抗炎作用。各种浓度的lapachol在100μM时显示出具有77.96百分比潜力的抗炎作用。不同浓度的Lapachol表现出剂量依赖性的抗水肿作用,在较高剂量时的最大百分比作用为77.9%。组织病理学研究表明,二甲苯的应用导致耳朵厚度显着增加,伴随着耳朵水肿和炎症细胞浸润的明显迹象,与对照组相比,真皮表皮增生。然而,与双氯芬酸治疗组中观察到的那些相比,用所研究的化合物治疗显示出耳厚度的显著降低和病理学差异。完成密度泛函理论计算以深入了解结构和光谱性质。几何优化,FMO,进行MEP分析。总的来说,分子对接结果表明,拉帕胆碱通过与COX-1和COX-2酶的活性位点结合而具有作为COX抑制剂的潜力。
    Medicinal plants are the main source of active chemical constituents responsible for curing or mitigating various ailments. To discover new, safe, and effective drug candidates the isolation and screening of natural products are essential. In the current research work, lapachol was isolated from Fernandoa adenophylla, which was evaluated for anti-inflammatory effect followed by molecular docking. The isolated compound was tested for anti-inflammatory effects using in vitro (HRBC assay) and in vivo (xylene-induced ear edema) experimental models. Various concentrations of lapachol demonstrated anti-inflammatory effects with a percent potential of 77.96 at 100 μM. Different concentrations of Lapachol demonstrated a dose-dependent anti-edematous effect with a maximum percent effect of 77.9 % at a higher dose. The histopathological study revealed that the application of xylene led to a significant increase in ear thickness, along with clear signs of ear edema and infiltration of inflammatory cells, as well as epidermal hyperplasia of the dermis when compared to the control group. However, treatment with the investigated compound showed a significant reduction in ear thickness and pathological differences comparable to those observed in the group treated with diclofenac. Density functional theory calculations are accomplished to gain insight into structural and spectroscopic properties. Geometry optimization, FMO, and MEP analyses are performed. Overall, the molecular docking results indicate that lapachol has potential as a COX inhibitor by binding to the active sites of both COX-1 and COX-2 enzymes.
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