Cytochrome c oxidase subunit I gene

细胞色素 c 氧化酶亚基 I 基因
  • 文章类型: Journal Article
    毛虫亚类中的纤毛虫长期以来很难分类,因为它们是最多态和高度分化的群体之一。导致他们的系统仍未解决。由于形态数据和遗传数据之间的不一致,hyputrich科Strongylidiidae科内的系统发育关系一直不明确。在这项研究中,建立了一个新的强线虫属,主要基于腹侧环行起源的新模式:左腹侧环行(LVR)起源于额-腹侧-横向环行(FVTA)III(前部),IV(中间部分),和V(后部);右腹侧环行来自整个FVTAVI。一个新物种,渭山杂种。11月。,sp.11月。,与Strongylidiumwuhanense种群的形态测量和分子数据一起进行了研究。提供了八个新的序列和核基因标记(单基因和多基因)来分析强基因的系统发育关系,COI基因用于揭示物种水平及以下的进一步遗传信息。结果表明:(1)Strongylidiidae是单系的,与Dorsomgininalia有密切的关系;(2)杂种。11月。形成了一个进化枝,是所有其他强者的姐妹;(3)Foissner的半脑闪异菌,1988年和PseudouroleptusHemberger,1985年不应该是同义词,由于两个属的形态特征不同,应将其细分;(4)起源于三个生前的LVR是Strongylidiidae的多态。LVR起源的发现不仅有助于Heterouroleptus属的建立,而且还有助于改善Strongylidiidae家族的诊断。
    在线版本包含补充材料,可在10.1007/s42995-024-00243-z获得。
    Ciliates in the subclass Hypotrichia have long been difficult to classify as they are one of the most polymorphic and highly differentiated groups, leading to their systematics remaining unresolved. Phylogenetic relationships within the hypotrich family Strongylidiidae have been ambiguous due to discordance between the morphological and genetic data. In this study, a new strongylidiid genus Heterouroleptus is established, mainly based on the novel mode of origin of the ventral cirral rows: left ventral cirral row (LVR) originates from frontal-ventral-transverse cirral anlagen (FVTA) III (anterior portion), IV (middle portion), and V (rear portion); right ventral cirral row comes from the entire FVTA VI. A new species, Heterouroleptus weishanensis gen. nov., sp. nov., is investigated along with the morphometric and molecular data from a population of Strongylidium wuhanense. Eight new sequences and nuclear gene markers (single-gene and multi-gene) are provided to analyze the phylogenetic relationships of strongylidiids, with the COI gene utilized to uncover further genetic information at species level and below. The results reveal that: (1) Strongylidiidae is monophyletic and has a close relationship with Dorsomarginalia; (2) Heterouroleptus gen. nov. forms a clade that is sister to all the other strongylidiids; (3) Hemiamphisiella Foissner, 1988 and Pseudouroleptus Hemberger, 1985 should not be synonyms, and both genera should be subdivided due to their variable morphological characteristics; (4) LVR originating from three anlagen is a plesiomorphy of Strongylidiidae. The discovery of the origin of the LVR not only contributes to the establishment of the genus Heterouroleptus, but also helps to improve the diagnosis of the family Strongylidiidae.
    UNASSIGNED: The online version contains supplementary material available at 10.1007/s42995-024-00243-z.
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  • 文章类型: Journal Article
    根据Spirometra物种的最新分类,六个物种(谱系)已被初步分类为有效。这些物种是Spirometraerinaceuropaei,S、叶酸,S.Mansoni,未描述的Spirometrasp.1,以及蜕膜链球菌复合体1和2。在这些物种中,在日本的野猪中,这种未描述的物种首次被发现为plerocercoid幼虫,进一步的研究证实,该物种是属于Spirometra属的新分类群。这里,我们描述了Spirometraasianasp。11月。,这在形态上很难与已知的Spirometra物种区分开来。然而,它在基因上很容易与其他Spirometra物种不同,从而促进识别。我们还强调S.Mansoni和S.asiana,但不是S.erinaceuropaei,是在亚洲引起人类裂头虫病和/或螺旋体增多症的病因。
    According to the latest taxonomy of Spirometra species, six species (lineages) have been tentatively classified as valid. These species are Spirometra erinaceieuropaei, S. folium, S. mansoni, undescribed Spirometra sp. 1, and S. decipiens complex 1 and 2. Among these species, the undescribed species was first discovered as plerocercoid larvae in wild boars in Japan and further studies have confirmed that this species is a new taxon belonging to the genus Spirometra. Here, we describe Spirometra asiana sp. nov., which is difficult to distinguish morphologically from known Spirometra species. However, it is genetically easily distinct from other Spirometra species, thus facilitating identification. We also emphasize that S. mansoni and S. asiana, but not S. erinaceieuropaei, are etiological agents that cause human sparganosis and/or spirometrosis in Asia.
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  • 文章类型: Journal Article
    在北半球的温带和亚北极地区发现了双头鱼和树状双头鱼。但它们也存在于南美洲的南部核心国家,智利和阿根廷。来自南美的D.latus和D.dendendicus的遗传特征尚未完全确定。本研究旨在通过线粒体细胞色素c氧化酶亚基I基因(cox1)和细胞色素b基因(cob)的单倍型网络分析,了解智利的D.latus和D.dendicus的遗传特征。以及他们的起源。Dibothriocephaluslatus和D.dendendicuspleroceroid幼虫是从在RegióndeLosLagos的Llanquihue湖中捕获的野生和/或野生鲑鱼中获得的,和洛斯里奥斯雷贡的潘古皮里湖,位于智利中部南部。D.latus的单倍型分析显示,cox1中的H1和cob中的H2是世界上D.latus常见的关键单倍型,包括智利,这两个基因在D.latus中表现出有限的遗传多样性。据先前报道,D.latus是在19世纪由欧洲和俄罗斯移民带入南美的。相比之下,树枝状D.的cox1和cob都显示出相当大的遗传多样性,智利和北半球的树枝状芽孢杆菌种群之间没有常见的单倍型。更有趣的是,在智利树枝状D.中检测到的两种cob单倍型(H24,H25)与在北美树枝状D.中检测到的单倍型(H30,H31)密切相关,强烈暗示智利的树枝状D是由北美的食肉迁徙鸟类带来的。据估计,智利的D.dendendicus与北半球的D.dendicus在大约111万年前有遗传差异,早在人类迁移到南美洲南部之前。
    Dibothriocephalus latus and Dibothriocephalus dendriticus are found throughout the temperate and sub-arctic zones of the northern hemisphere, but they are also found in the southern core countries of South America, Chile and Argentina. Genetic characteristics of D. latus and D. dendriticus from South America have yet to be fully defined. The present study aimed to understand the genetic characteristics of D. latus and D. dendriticus from Chile by haplotype network analysis of mitochondrial cytochrome c oxidase subunit I gene (cox1) and cytochrome b gene (cob), as well as their origins. Dibothriocephalus latus and D. dendriticus plerocercoid larvae were obtained from feral and/or wild salmonids captured in Lake Llanquihue in Región de Los Lagos, and Lake Panguipulli in Región de Los Ríos, located south of central Chile. Haplotype analysis of D. latus revealed that H1 in cox1 and H2 in cob are the key haplotypes common to D. latus across the world, including Chile, and both genes exhibited limited genetic diversity in D. latus. It was assumed that D. latus was brought into South America by European and Russian immigrants in the 19th century as previously reported. In contrast, both the cox1 and cob of D. dendriticus display considerable genetic diversity, with no common haplotypes between D. dendriticus populations from Chile and the northern hemisphere. More intriguingly, two cob haplotypes (H24, H25) detected in Chilean D. dendriticus were closely linked to haplotypes (H30, H31) detected in North American D. dendriticus, strongly implying that D. dendriticus in Chile was brought by piscivorous migrating birds from North America. It has also been estimated that the D. dendriticus from Chile genetically diverged from the D. dendriticus from the northern hemisphere approximately 1.11 million years ago, long before humans migrated to the southern parts of South America.
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  • 文章类型: Journal Article
    全球鱼类消费量随着人口增长而增加,导致过度捕捞的困境。过度捕捞的高价值鱼经常被市场上的其他鱼取代。因此,准确识别市场上的鱼产品非常重要。在这项研究中,全DNA和迷你DNA条形码用于检测贵阳市的鱼类产品欺诈,贵州省,中华人民共和国。分子结果显示,191个样品中的39个(20.42%)与标记不一致。新鲜标签错误的百分比,冷冻,煮熟,鱼罐头产品分别为11.70、20.00、34.09和50.00%,分别。种内和属内微型DNA条形码的平均木村两参数距离分别为0.56%和6.42%,分别,全DNA条形码分别为0.53%和7.25%,分别。在这项研究中,商业欺诈很明显;大多数高价鱼被具有类似特征的低价鱼取代。我们的发现表明,DNA条形码是识别鱼类产品的有效工具,可用于提高国内渔业的透明度和公平贸易。
    Global fish consumption is increasing in tandem with population growth, resulting in the dilemma of overfishing. Overfished high-value fish are often replaced with other fish in markets. Therefore, the accurate identification of fish products in the market is important. In this study, full-DNA and mini-DNA barcoding were used to detect fish product fraud in Guiyang, Guizhou Province, People\'s Republic of China. The molecular results revealed that 39 (20.42%) of the 191 samples were inconsistent with the labels. The percentages of mislabeling of fresh, frozen, cooked, and canned fish products were 11.70, 20.00, 34.09, and 50.00%, respectively. The average Kimura two-parameter distances of mini-DNA barcoding within species and within genera were 0.56 and 6.42%, respectively, and those of full-DNA barcoding were 0.53 and 7.25%, respectively. Commercial fraud was evident in this study; most high-priced fish were replaced with low-priced fish with similar features. Our findings indicate that DNA barcoding is an effective tool for identifying fish products and could be used to enhance transparency and fair trade in domestic fisheries.
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  • 文章类型: Journal Article
    OBJECTIVE: The aim of this study was to characterize Leucocytozoon caulleryi from backyard chickens in Khon Kaen Province, Thailand.
    METHODS: Tissue samples were collected from backyard chickens suspected to have leucocytozoonosis and subjected to histopathology examination. The BLAST Tool at NCBI GenBank (Basic Local Alignment Research Tools) (http://www.ncbi.nlm.nih.gov/BLAST) was used to identify the nucleotide sequence of the partial cytochrome c oxidase subunit I (cox I) gene. A Phylogenetic tree for analysis of L. caulleryi was constructed by using MEGA 7.0 software (https://www.megasoftware.net/).
    RESULTS: The necropsy results revealed the subcutaneous hemorrhages of pectoral muscles, multifocal hemorrhages of the thymus and pectoral muscles, hemorrhage of the proventriculus and peritoneal cavity, and megaloschizonts of the pancreas and intestine, including subcapsular hemorrhages of the liver. Microscopic examination revealed numerous megaloschizonts of Leucocytozoon spp. in the pectoral muscles, intestine, pancreas, and thymus. Molecular analysis of the partial cox I gene showed that the causal agent was closely related to L. caulleryi reported in Japan.
    CONCLUSIONS: From these results, L. caulleryi was determined to be the causal agent of leucocytozoonosis and was closely associated with L. caulleryi reported in Japan.
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  • 文章类型: Journal Article
    The systematics of tapeworms in the genus Spirometra has been progressing with the accumulation of molecular genetics data, but the taxonomic status of many nominal species remains under debate. We report morphological and molecular-phylogenetic data for a Spirometra species collected from a domestic cat (Felis silvestris catus) in Chiloé Island, Chile. The Spirometra species was shown to be genetically conspecific with Spirometra decipiens complex 1 found in a Pampas fox (Lycalopex gymnocercus) from Argentina, and was closely related to a Hoary fox (Lycalopex vetulus) and rattlesnake (Crotalus durissus) from Brazil. Therefore, the presence of S. decipiens complex 1 was molecularly confirmed for the first time in Chile. The findings of the present study add useful information for the systematics of poorly known Spirometra species in South America.
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  • 文章类型: Case Reports
    一名92岁的日本妇女左乳房有肿块,通过对肿块进行活检怀疑为裂头虫病。质量消失了一次,但一年后又出现在同一地点.为了明确的诊断,手术切除了肿块,并检测到一种类似麦角的蠕虫。通过线粒体DNA分析,病原体被确认为I型Spirometra(最可能是Spirometramansoni)。血清学检查也证明该病例为裂头虫病。考虑到亚洲存在两种Spirometra物种(I型和II型),尤其是日本,强烈推荐对病原体进行分子分析以了解流行病学,感染源,以及这两个物种对人类的致病性,如果有寄生虫标本.
    A 92-year-old Japanese woman presented with a mass in the left breast, and sparganosis was suspected by biopsy of the mass. The mass disappeared once, but it reappeared at the same site one year later. For a definitive diagnosis, the mass was surgically removed, and a sparganum-like worm was detected. The causative agent was confirmed as Spirometra Type I (most probably Spirometra mansoni) by mitochondrial DNA analysis. The serological examination also proved the case as sparganosis. Considering the presence of two Spirometra species (Type I and II) in Asia, particularly Japan, molecular analysis of the causative agents is highly recommended to understand the epidemiology, infection sources, and pathogenicity in humans in both species, if the parasite specimens are available.
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  • 文章类型: Journal Article
    The major aim of the present study was to determine by molecular methods whether the wide and narrow types of macroscopic sarcocysts in Spanish sheep belonged to different species, that is, Sarcocystis gigantea and Sarcocystis medusiformis, respectively. Additionally, we wanted to identify and characterize molecularly the species forming microscopic sarcocysts and determine the phylogenetic placement of all species found. Portions of the oesophagus, diaphragm and hind legs containing macroscopic sarcocysts were collected from slaughtered culled ewes at an abattoir in the Province of Madrid, Central Spain, but both macroscopic and microscopic sarcocysts were isolated for molecular examination. Genomic DNA from 63 sarcocysts (21 macroscopic, 42 microscopic) were examined at the cytochrome c oxidase subunit I gene (cox1), while selected isolates of each species found were further examined at the 18S and 28S ribosomal RNA (rRNA) genes. The 63 sarcocysts comprised five cox1 sequence types, each corresponding to a particular sarcocyst type, and thus represented five Sarcocystis spp. The slender fusiform and thick macrocysts belonged to S. medusiformis and S. gigantea, respectively. The microscopic sarcocysts belonged to Sarcocystis arieticanis, Sarcocystis tenella and a Sarcocystis mihoensis-like species with slanting thorn-like cyst wall protrusions, which was characterised molecularly for the first time. Based on its phylogenetic position, the S. mihoensis-like species probably uses corvids as definitive hosts.
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  • 文章类型: Journal Article
    描述了广西壮族自治区的三个新种和一个亚种。中国:新的物种是:秋冬香,sp.11月。和秋东,sp.11月。,和东江,sp.11月。,该亚种是Amynthasshengtangmontisminusculus亚种。11月。所有的精孔在5/6-8/9中都有四对精孔,这表明它们应该属于皮质组。将它们的形态特征与来自中国和其他亚洲国家的皮质群中的其他类似物种进行了比较,如AmynthaspulvinusSun&Jiang,2013年,安密斯纯属品(陈,1938),阿米因斯皮质(Kinberg,1867),太阳和邱山,2013年,和Amynthascarnosus(Goto&Hatai,1899).此外,所呈现的结果通过COI条形码序列的成对比较得到证实.每个新物种与其他18个皮质类物种之间的成对距离平均大于14.7%。此外,成对的距离为10.7-11.4%。
    Three new species and one subspecies of the genus Amynthas are described from Guangxi Zhuang Autonomous Region, China: The new species are: Amynthas maximus Qiu & Dong, sp. nov. and Amynthas tortuosus Qiu & Dong, sp. nov., and Amynthas shengtangmontis Dong & Jiang, sp. nov., the subspecies is Amynthas shengtangmontis minusculus subsp. nov. All have four pairs of spermathecal pores in 5/6-8/9, which indicates that they should belong to the corticis-group. Their morphological characteristics are compared to other similar species in the corticis-group from China and other Asian countries, such as Amynthas pulvinus Sun & Jiang, 2013, Amynthas homosetus (Chen, 1938), Amynthas corticis (Kinberg, 1867), Amynthas dorsualis Sun & Qiu, 2013, and Amynthas carnosus (Goto & Hatai, 1899). In addition, the results presented are confirmed by the pairwise comparison of COI barcode sequences. The pairwise distances between each new species and the other eighteen corticis-group species are greater than 14.7% on average. Furthermore, the pairwise distance between A. shengtangmontis shengtangmontis and A. shengtangmontis minusculus is 10.7-11.4%.
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  • 文章类型: Journal Article
    隔膜样本是从Gifu县的53只梅花鹿中收集的,日本;分离了220个肌囊,在湿坐骑中检查,并根据其囊肿壁突起进行分类。然后对肌囊进行分子检查,以将它们分配给不同的物种。最初通过针对五个物种的cox1的多重PCR测定鉴定了220个肌囊中的11个,而其余11个肌囊通过标准PCR和测序鉴定。来自选择的肌囊的DNA用于cox1(59个序列)和18SrDNA(23个序列)的PCR扩增和测序。220个肌囊包含七个主要的cox1序列类型或物种。类型4和7被分配给已知物种毛囊孢子虫和卵卵结囊孢子虫,而类型1,3和5被认为代表三个新物种,为其命名日本肉孢子虫,已经提出了松树孢子虫和gjerdei孢子虫。2型和6型与tarandi和taeniata类结节虫最相似,分别,但不能明确地分配给这些物种。属于日本血吸虫的结囊是宏观的,有相当厚的指状突起,而其他六个物种的大多数肌囊都是微观的。S.cf.tarandi和S.matsuoae呈纺锤形,并具有薄薄的手指状囊肿壁突起。S.pilosa和S.gjerdei的结囊有相似的毛发状突起,而S.cf.taeniata表面光滑。日本血吸虫的结囊,S.pilosa,S、参见。塔兰迪,S.Gjerdei,松树,S、参见。在50例(94.3%)中发现了taeniata和卵圆虫,29(54.7%),22(41.5%),10(18.9%),8(15.1%),检查的53只梅花鹿中有6只(11.3%)和1只(1.9%),分别。开发了一种针对cox1的改进的多重PCR检测方法,通过这七个结节虫。在本研究中发现可以确定。
    Samples of diaphragm were collected from 53 sika deer from Gifu Prefecture, Japan; 220 sarcocysts were isolated, examined in wet mounts and classified according to their cyst wall protrusions. The sarcocysts were then examined molecularly in order to assign them to different species. All but 11 of the 220 sarcocysts were initially identified by means of a multiplex PCR assay targeting cox1 of five species, whereas the remaining 11 sarcocysts were identified by standard PCR and sequencing. DNA from selected sarcocysts was used for PCR amplification and sequencing of cox1 (59 sequences) and 18S rDNA (23 sequences). The 220 sarcocysts comprised seven major cox1 sequence types or species. Types 4 and 7 were assigned to the known species Sarcocystis pilosa and Sarcocystis ovalis, whereas types 1, 3 and 5 were considered to represent three new species, for which the names Sarcocystis japonica, Sarcocystis matsuoae and Sarcocystis gjerdei have been proposed. Types 2 and 6 were most similar to Sarcocystis tarandi and Sarcocystis taeniata, respectively, but could not be unequivocally assigned to these species. Sarcocysts belonging to S. japonica were macroscopic with fairly thick finger-like protrusions, whereas most sarcocysts of the six other species were microscopic. Sarcocysts of S. cf. tarandi and S. matsuoae were spindle-shaped and possessed thin finger-like cyst-wall protrusions. Sarcocysts of S. pilosa and S. gjerdei had similar hair-like protrusions, whereas those of S. cf. taeniata had a smooth surface. Sarcocysts of S. japonica, S. pilosa, S. cf. tarandi, S. gjerdei, S. matsuoae, S. cf. taeniata and S. ovalis were found in 50 (94.3%), 29 (54.7%), 22 (41.5%), 10 (18.9%), 8 (15.1%), 6 (11.3%) and 1 (1.9%) of the 53 sika deer examined, respectively. An improved multiplex PCR assay targeting cox1 was developed, through which the seven Sarcocystis spp. found in the present study could be identified.
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