Culture Techniques

文化技术
  • 文章类型: Journal Article
    血小板是终末分化的无核细胞,但它们仍然具有细胞样功能,甚至可以产生后代血小板。然而,到目前为止,血小板发芽的机制尚未阐明。这里,我们显示,当富血小板血浆(PRP)在37°C培养时,血小板出现孢子现象。当给定特定剪切力时,血小板的数量增加。发现AMP相关的信号通路,例如PKA和AMPK在孢子状态的血小板中被激活。同时,基因的mRNA表达水平,例如CNN3,CAPZB,DBNL,与PLS1骨架蛋白相关的KRT19和ESPN也发生了变化。此外,当我们使用AMPK激活剂AICAR(AI)治疗洗涤的血小板时,培养的血小板仍然会出现孢子现象。我们进一步证明,用Forskolin处理的洗涤血小板,PKA的激活剂,培养后不仅血小板发芽,而且AMPK也被激活。一起来看,这些数据表明,AMPK在血小板出芽和增殖过程中起关键作用,提出了解决临床血小板短缺问题的新策略。
    什么是新的?在这项研究中,我们发现,当富血小板血浆(PRP)在37℃培养时,血小板出现孢子现象并增加。发现AMP相关的信号通路,例如PKA和AMPK在孢子状态的血小板中被激活。此外,我们发现PKA是AMPK的上游激酶。在血小板发芽和增殖的过程中,骨架蛋白PLS1及其相关基因的mRNA表达水平,例如CNN3,CAPZB,DBNL,KRT19和ESPN也发生了变化。影响是什么?我们的研究提出了解决临床血小板短缺问题的新策略。
    Platelets are terminally differentiated anucleated cells, but they still have cell-like functions and can even produce progeny platelets. However, the mechanism of platelet sprouting has not been elucidated so far. Here, we show that when platelet-rich plasma(PRP) was cultured at 37°C, platelets showed a spore phenomenon. The number of platelets increased when given a specific shear force. It is found that AMP-related signaling pathways, such as PKA and AMPK are activated in platelets in the spore state. Meanwhile, the mRNA expression levels of genes, such as CNN3, CAPZB, DBNL, KRT19, and ESPN related to PLS1 skeleton proteins also changed. Moreover, when we use the AMPK activator AICAR(AI) to treat washed platelets, cultured platelets can still appear spore phenomenon. We further demonstrate that washed platelets treated with Forskolin, an activator of PKA, not only platelet sprouting after culture but also the AMPK is activated. Taken together, these data demonstrate that AMPK plays a key role in the process of platelet budding and proliferation, suggesting a novel strategy to solve the problem of clinical platelet shortage.
    What is new? In this study, we showed that when platelet-rich plasma(PRP) was cultured at 37°C, platelets showed spore phenomenon and increased.It was found that AMP-related signaling pathways, such as PKA and AMPK were activated in platelets in the spore state.In addition, we found that PKA acts as an upstream kinase of AMPK.In the process of platelet sprouting and proliferation, the mRNA expression levels of skeleton protein PLS1 and its related genes, such as CNN3, CAPZB, DBNL, KRT19, andESPN also changed.What is the impact? Our study proposes a new strategy to solve the problem of clinical platelet shortage.
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  • 文章类型: Journal Article
    由损伤或疾病引起的中枢神经系统(CNS)中的脱髓鞘可导致神经功能丧失和瘫痪。旨在促进轴突髓鞘再生的细胞疗法是一种有希望的治疗途径,间充质基质细胞(MSC)是一个突出的候选者。我们先前已经证明,源自人嗅觉粘膜的MSC(hOM-MSC)比骨髓来源的MSC(hBM-MSC)更大程度地促进髓鞘形成。然而,使用不符合良好生产规范(GMP)的方法和材料开发hOM-MSC。在考虑将这些细胞用于临床之前,有必要开发一种易于适应符合GMP的环境的分离和扩增方法。我们在此证明hOM-MSC可以在没有酶促组织消化或细胞分选以及没有培养抗生素的情况下衍生。它们容易在符合GMP的培养基中生长并表达典型的MSC表面标记。它们强健地产生CXCL12(促进髓鞘形成的关键分泌因子),并且在体外啮齿动物CNS培养物中促进髓鞘形成。符合GMP的hOM-MSC在这方面与在非GMP条件下生长的那些相当。然而,在体内脱髓鞘疾病模型中评估时(实验性自身免疫性脑炎,EAE),与对照组相比,它们没有显着改善疾病评分,表明进一步的临床前评估是必要的,在他们推进临床试验之前。
    Demyelination in the central nervous system (CNS) resulting from injury or disease can cause loss of nerve function and paralysis. Cell therapies intended to promote remyelination of axons are a promising avenue of treatment, with mesenchymal stromal cells (MSCs) a prominent candidate. We have previously demonstrated that MSCs derived from human olfactory mucosa (hOM-MSCs) promote myelination to a greater extent than bone marrow-derived MSCs (hBM-MSCs). However, hOM-MSCs were developed using methods and materials that were not good manufacturing practice (GMP)-compliant. Before considering these cells for clinical use, it is necessary to develop a method for their isolation and expansion that is readily adaptable to a GMP-compliant environment. We demonstrate here that hOM-MSCs can be derived without enzymatic tissue digestion or cell sorting and without culture antibiotics. They grow readily in GMP-compliant media and express typical MSC surface markers. They robustly produce CXCL12 (a key secretory factor in promoting myelination) and are pro-myelinating in in vitro rodent CNS cultures. GMP-compliant hOM-MSCs are comparable in this respect to those grown in non-GMP conditions. However, when assessed in an in vivo model of demyelinating disease (experimental autoimmune encephalitis, EAE), they do not significantly improve disease scores compared with controls, indicating further pre-clinical evaluation is necessary before their advancement to clinical trials.
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  • 文章类型: Journal Article
    Wolffian导管(WD)的维持和分化主要由雄激素作用驱动,由雄激素受体(AR)介导。众所周知,间充质表明上皮细胞的命运和分化。然而,间充质AR在沃尔夫导管发育中的体内发育需求仍不明确。通过设计间充质特异性Ar敲除(ARcKO),我们发现间充质Ar的丢失导致双侧或单侧的尾端Wolffian导管变性和颅端Wolffian导管囊性形成。ARcKOWolffian导管的离体培养总是导致双侧缺陷,表明,即使在没有间充质Ar的情况下,体内源自周围组织的某些因子也可能促进沃尔夫导管的存活和生长。机械上,我们发现上皮区和间充质区室的细胞增殖显著降低;但细胞凋亡不受影响。E14.5中肾的RNA-seq转录组学分析揭示了131个差异表达基因。多个下调基因(Top2a,Wnt9b,Lama2和Lamc2)与ARcKO雄性胚胎的形态和细胞变化有关(即细胞增殖减少和上皮细胞数量减少)。在ARcKO雄性胚胎中,对形态发生至关重要的间充质分化为平滑肌细胞也受到损害。一起来看,我们的结果证明了间充质AR在小鼠Wolffian导管维持和形态发生中的关键作用。
    Wolffian duct (WD) maintenance and differentiation is predominantly driven by the androgen action, which is mediated by the androgen receptor (AR). It is well established that the mesenchyme indicates the fate and differentiation of epithelial cells. However, in vivo developmental requirement of mesenchymal AR in WD development is still undefined. By designing a mesenchyme-specific Ar knockout (ARcKO), we discovered that the loss of mesenchymal Ar led to the bilateral or unilateral degeneration of caudal WDs and cystic formation at the cranial WDs. Ex vivo culture of ARcKO WDs invariably resulted in bilateral defects, suggesting that some factor(s) originating from surrounding tissues in vivo might promote WD survival and growth even in the absence of mesenchymal Ar. Mechanistically, we found cell proliferation was significantly reduced in both epithelial and mesenchymal compartments; but cell apoptosis was not affected. Transcriptomic analysis by RNA sequencing of E14.5 mesonephroi revealed 131 differentially expressed genes. Multiple downregulated genes (Top2a, Wnt9b, Lama2, and Lamc2) were associated with morphological and cellular changes in ARcKO male embryos (ie, reduced cell proliferation and decreased number of epithelial cells). Mesenchymal differentiation into smooth muscle cells that are critical for morphogenesis was also impaired in ARcKO male embryos. Taken together, our results demonstrate the crucial roles of the mesenchymal AR in WD maintenance and morphogenesis in mice.
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  • 文章类型: Journal Article
    结核分枝杆菌(MTB)的培养确认仍然是结核病(TB)诊断的金标准,培养物转化代表治愈的证据。然而,尽管许多患者由于存在可行的不可培养形式而保持传染性,但超过40%的TB样品未能分离MTB。以前,我们已经证明了两种短的阳离子肽,T14D和TB08L,在低浓度下诱导出强反应,导致刺激MTB和相关动物病原体牛分枝杆菌(bTB)的生长。这里,我们检查了这些肽,表明它们可以通过膜电位降低影响分枝杆菌膜的完整性和功能。我们还表明,这种破坏与来自特定分枝杆菌膜传感器的转录组信号异常减少有关,该传感器通常监测即时细胞环境并维持非生长表型。我们观察到,以最佳浓度将MTB或bTB暴露于这些肽会迅速抑制维持休眠表型的信号机制,这导致有氧代谢的促进并转化为复制型表型。我们进一步展示了这些肽作为能够通过刺激分枝杆菌生长来增强常规常规培养方法的试剂的实际应用。我们评估了补充肽的样品制备和培养方案与黄金标准常规方法分离MTB的能力,该方法对来自155名疑似TB患者的255个样品进行了平行测试。肽增强使样品阳性率增加了46%,并使呼吸/粪便采样的样品阳性平均时间减少了7天。分离率的最大改善来自痰涂片阴性的低负荷样品和粪便。肽增强使采样测试灵敏度提高了19%,从先前培养证实的结核病患者的样本中恢复20%,和经验治疗结核病的21%。我们得出的结论是,使用D-对映体肽进行的样品去污和培养增强为急需的TB培养确认改善提供了良好的潜力。
    The culture confirmation of Mycobacterium tuberculosis (MTB) remains the gold standard for the diagnosis of Tuberculosis (TB) with culture conversion representing proof of cure. However, over 40% of TB samples fail to isolate MTB even though many patients remain infectious due to the presence of viable non-culturable forms. Previously, we have shown that two short cationic peptides, T14D and TB08L, induce a hormetic response at low concentrations, leading to a stimulation of growth in MTB and the related animal pathogen Mycobacterium bovis (bTB). Here, we examine these peptides showing they can influence the mycobacterial membrane integrity and function through membrane potential reduction. We also show this disruption is associated with an abnormal reduction in transcriptomic signalling from specific mycobacterial membrane sensors that normally monitor the immediate cellular environment and maintain the non-growing phenotype. We observe that exposing MTB or bTB to these peptides at optimal concentrations rapidly represses signalling mechanisms maintaining dormancy phenotypes, which leads to the promotion of aerobic metabolism and conversion into a replicative phenotype. We further show a practical application of these peptides as reagents able to enhance conventional routine culture methods by stimulating mycobacterial growth. We evaluated the ability of a peptide-supplemented sample preparation and culture protocol to isolate the MTB against a gold standard routine method tested in parallel on 255 samples from 155 patients with suspected TB. The peptide enhancement increased the sample positivity rate by 46% and decreased the average time to sample positivity of respiratory/faecal sampling by seven days. The most significant improvements in isolation rates were from sputum smear-negative low-load samples and faeces. The peptide enhancement increased sampling test sensitivity by 19%, recovery in samples from patients with a previously culture-confirmed TB by 20%, and those empirically treated for TB by 21%. We conclude that sample decontamination and culture enhancement with D-enantiomer peptides offer good potential for the much-needed improvement of the culture confirmation of TB.
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  • 文章类型: Journal Article
    UNASSIGNED: Bacterial cholangitis is a common complication in patients with ischemic type biliary lesions and/or anastomotic strictures after liver transplantation (LTX). Patients frequently need antibiotics and endoscopic retrograde cholangiography (ERC) to improve the bile flow. Antibiotic treatment is based on findings in standard microbiological cultivation (SMC) of bile. However, the cultivation techniques are limited to a subset of bacteria easy-to-cultivate. Therefore, the aim of our study was to evaluate the value of next generation sequencing as an additional diagnostic tool to SMC in ischemic type biliary lesions and/or anastomotic strictures.
    UNASSIGNED: We sequenced the V1-V2 region of the 16S rRNA gene in 242 stored bile samples in patients after LTX and compared the results with findings of SMC. SMC was performed in n = 135 (56%) fresh bile samples in addition to NGS. SMC was part of the clinical routine in these patients.
    UNASSIGNED: NGS detected bacterial genera in bile samples more often than SMC (P = 5.42 × 10-74). SMC showed insufficient discovery of bacterial genera compared to NGS with better performance in patients receiving antibiotics prior to ERC. SMC missed many bacterial genera detected by NGS.
    UNASSIGNED: NGS was more sensitive in detecting bacteria in bile than SMC, no clinical parameters could be used to improve discovery rates in SMC and many genera were missed by SMC. Therefore, NGS should be used in a combined approach with SMC for improved diagnostics to achieve more specific and targeted antibiotic treatments.
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  • 文章类型: Journal Article
    利什曼病是由利什曼原虫属的原生动物引起的人畜共患疾病。在玻利维亚,利什曼病主要发生在皮肤形式(CL),其次是粘膜或粘膜皮肤形式(ML或MCL),分组为皮瘤利什曼病(TL),而内脏利什曼病(VL)的病例很少见。TL病例通常通过寄生虫学方法诊断:直接寄生虫检查(DPE)和无菌培养,后者仅由专业实验室执行。本研究的目的是优化玻利维亚TL的寄生虫学诊断,使用两种抽样方法。117名疑似TL患者的样本,通过抽吸(n=121)和刮擦(n=121)获得的病变边缘通过:直接寄生虫学检查,在TSTB培养基中培养,施耐德培养基中的微生物培养和微培养。使用两种采样方法中的任何一种评估的四种技术的阳性实验室结果被认为是金标准。在117名疑似患者中,TL在96(82%)中得到确认,对应的确诊病例79例(82.3%)为CL,16例(16.7%)为ML。寄生虫学技术的特异性为100%,在TSTB培养物中刮取样品时,其分析灵敏度更高(98%)。在TSTB和微生物养殖中刮擦样品与参考样品的相关性很好(Cohen的kappa系数=0.88),并显示出良好的可靠性(Cronbach的α系数≥0.91)。微培养比其他培养方法更早提供阳性结果(平均第4.5天)。到第14天,已检测到98%的阳性培养物。刮削取样和微生物培养与较高的培养污染相关(6%和17%,分别)。细菌污染占主导地位,无论采样和培养方法如何,而在刮擦样品的培养物中更经常观察到丝状真菌和混合污染。结论:(i)刮片样本被证明更适合于TL的诊断,因为它们增加了分析灵敏度,对患者的创伤较小,对实验室人员来说比吸出物更安全;(ii)培养,主要在TSBT培养基中,与其他培养基相比,由于其高灵敏度(DPE诊断的病例数增加了一倍)且成本低,因此应用于TL的诊断。
    Leishmaniases are zoonotic diseases caused by protozoa of the genus Leishmania. In Bolivia, leishmaniasis occurs mainly in the cutaneous form (CL) followed by the mucosal or mucocutaneous form (ML or MCL), grouped as tegumentary leishmaniosis (TL), while cases of visceral leishmaniasis (VL) are rare. The cases of TL are routinely diagnosed by parasitological methods: Direct Parasitological Exam (DPE) and axenic culture, the latter being performed only by specialized laboratories. The aim of the present study was to optimize the parasitological diagnosis of TL in Bolivia, using two sampling methods. Samples from 117 patients with suspected TL, obtained by aspiration (n = 121) and scraping (n = 121) of the edge of the lesion were tested by: direct parasitological exam, culture in TSTB medium, and miniculture and microculture in Schneider\'s medium. A positive laboratory result by any of the four techniques evaluated using either of the two sampling methods was considered the gold standard. Of the 117 suspected patients included, TL was confirmed in 96 (82 %), corresponding 79 of the confirmed cases (82.3 %) to CL and 16 (16.7 %) to ML. Parasitological techniques specificity was 100 % and their analytical sensitivity was greater with scraping samples in TSTB culture (98 %). Scraping samples in TSTB and miniculture correlated well with the reference (Cohen\'s kappa coefficient=0.88) and showed good reliability (Cronbach\'s alpha coefficient ≥0.91). Microculture provided positive results earlier than the other culture methods (mean day 4.5). By day 14, 98 % of positive cultures had been detected. Scraping sampling and miniculture were associated with higher culture contamination (6 % and 17 %, respectively). Bacterial contamination predominated, regardless of the sampling and culture method, while filamentous fungi and mixed contamination were more frequently observed in cultures from scraping samples. In conclusion: (i) scraping samples proved more suitable for the diagnosis of TL as they increased analytical sensitivity, are less traumatic for the patient and are safer for laboratory personnel than aspirates; (ii) culture, mainly in TSBT medium, should be used for the diagnosis of TL due to its high sensitivity (doubling the number of cases diagnosed by DPE) and its low cost compared to other culture media.
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  • 文章类型: Journal Article
    目的:这项研究很重要,因为它显示了与使用培养作为实验室鉴定人类弯曲杆菌病的主要诊断方法相关的潜在流行病学沉默。此外,我们展示了聚合酶链反应方法如何与常规疾病监测报告的人类弯曲杆菌病发作次数系统性增加相关.这些发现与操作相关,并具有公共卫生意义,因为它们表明了考虑诊断方法变化的重要性。例如,在对历史数据的流行病学分析和根据过去对未来数据的解释中。我们还认为,这项研究强调了微生物学和流行病学之间的协同作用对于疾病监测至关重要。
    OBJECTIVE: This study is important because it shows the potential epidemiological silence associated with the use of culture as the primary diagnostic method for the laboratory identification of human campylobacteriosis. Also, we show how polymerase chain reaction methods are associated with a systematic increase in the number of human campylobacteriosis episodes as reported by routine disease surveillance. These findings are operationally relevant and have public health implications because they tell how crucial it is to consider changes in diagnostic methods, e.g., in the epidemiological analysis of historical data and in the interpretation of future data in light of the past. We also believe that this study highlights how the synergy between microbiology and epidemiology is essential for disease surveillance.
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  • 文章类型: Journal Article
    器官型切片培养提供了优于原代和细胞系培养模型的几个优点。与单层文化不同,器官型切片培养保留了组织的三维结构,多谱系细胞群,和许多复杂的功能特征。器官型切片培养物可以暴露于生物,药理学,或环境因素,并进行分析以预测体内反应。在这里,我们描述了一种从大鼠胎盘产生的器官型切片培养物的制备方法。
    Organotypic slice cultures provide several advantages over primary and cell line culture models. Unlike monolayer cultures, organotypic slice cultures retain the tissue\'s 3-D architecture, multi-lineage cell populations, and many complex functional characteristics. Organotypic slice cultures can be exposed to biological, pharmacological, or environmental agents and analyzed to predict in vivo responses. Herein, we describe a method for preparing organotypic slice cultures generated from rat placenta.
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  • 文章类型: Journal Article
    HCoV-OC43,HCoV-229E,HCoV-NL63和HCoV-HKU1是七种已知的人类冠状病毒(HCoV)中的四种,与高致病性SARS-CoV不同,MERS-CoV,和SARS-CoV-2,这四种所谓的季节性HCoV通常会导致轻度上呼吸道疾病。作为生物安全2级(BSL-2)病原体,季节性HCoV更容易获得,可以用作研究高致病性HCoV的替代方法。然而,多年来,由于缺乏通用的培养系统以及典型的培养方法无法产生高滴度的传染病种,科学家们发现这些难以研究。我们已经开发了培养和定量HCoV-OC43,-229E的感染性病毒和病毒RNA的测定法,和-NL63。我们确定了哪些永生化细胞系应该用于优化HCoV-OC43,-229E的复制,和-NL63以产生高滴度(VeroE6,Huh-7和LLC-MK2细胞,分别)。在这里,我们提出了改进每个季节性HCoV的传播和定量的协议。©2023威利期刊有限责任公司。基本方案1:HCoV的生长基本方案2:通过噬斑测定的HCoV的定量基本方案3:复制的HCoVRNA产物的定量基本方案4:通过超速离心浓缩HCoV。
    HCoV-OC43, HCoV-229E, HCoV-NL63, and HCoV-HKU1 are four of the seven known human coronaviruses (HCoVs) and, unlike the highly pathogenic SARS-CoV, MERS-CoV, and SARS-CoV-2, these four so-called seasonal HCoVs generally cause mild upper-respiratory-tract illness. As Biosafety Level 2 (BSL-2) pathogens, the seasonal HCoVs are more accessible and can be used as surrogates for studying the highly pathogenic HCoVs. However, scientists have for many years found these difficult to study because of the lack of a universal culture system and the inability of typical culture methods to yield high-titer infectious stocks. We have developed assays to grow and quantify infectious virus and viral RNA for HCoV-OC43, -229E, and -NL63. We identified which immortalized cell lines should be used to optimize the replication of HCoV-OC43, -229E, and -NL63 in order to generate high titers (Vero E6, Huh-7, and LLC-MK2 cells, respectively). Here we present protocols for improved propagation and quantification of each seasonal HCoV. © 2023 Wiley Periodicals LLC. Basic Protocol 1: Growth of HCoVs Basic Protocol 2: Quantification of HCoV by plaque assay Basic Protocol 3: Quantification of HCoV RNA products of replication Basic Protocol 4: Concentrating HCoVs via ultracentrifugation.
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  • 文章类型: Journal Article
    近年来,随着非种植方法的发展,很明显,肠道细菌对人类健康有重大影响。然而,因为三分之一的基因不能被注释,很难通过计算机分析来阐明所有肠道细菌的功能,有必要通过培养来研究肠道细菌。此外,为每个细菌推荐的各种培养基已用于培养肠道细菌;然而,每种培养基的制备都很复杂。为了同时培养许多细菌,并在相同条件下比较细菌表型,需要能够培养多种细菌的培养基。在这项研究中,我们开发了GAM+血液培养基(GB培养基),由含有5%(v/v)马血的Gifu厌氧培养基组成;它易于制备,并且可以成功培养人类肠道微生物群中85%的可用优势物种。
    In recent years, with the development of non-cultivation approaches, it has become evident that intestinal bacteria have a significant impact on human health. However, because one-third of the genes cannot be annotated, it is difficult to elucidate the function of all intestinal bacteria by in silico analysis, and it is necessary to study the intestinal bacteria by culturing them. In addition, various media recommended for each individual bacterium have been used for culturing intestinal bacteria; however, the preparation of each medium is complex. To simultaneously culture many bacteria and compare bacterial phenotypes under the same conditions, a medium capable of culturing a wide range of bacteria is needed. In this study, we developed GAM + blood medium (GB medium), which consists of Gifu anaerobic medium containing 5% (v/v) horse blood; it is easy to prepare and it allowed the successful cultivation of 85% of the available predominant species in the human intestinal microbiota.
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