Computational approach

计算方法
  • 文章类型: Journal Article
    再生医学和化妆品目前是药物发现的两个突出领域。尽管许多用于再生医学和化妆品的药品已获得官方机构的批准,仍然需要克服一些挑战,尤其是财务和时间问题。因此,药物重新定位,这是以前批准的药物用于新的治疗,作为解决这些问题的一种有希望的方法。最近,收集了越来越多的科学证据来证明这种新方法在再生医学和化妆品领域的适用性。药物开发专家还利用新技术发现新的候选物,用于按照计算方法进行重新定位。药物重新定位的两种主要方法之一。因此,许多重新利用的候选人已经获得批准进入市场,并见证了财务上的成功,如米诺地尔和芬戈莫德。药物重新定位的好处对于再生医学和化妆品是不可否认的。然而,关于这种方法的某些方面仍然需要仔细考虑,包括临床试验期间的实际有效性,专利条例,数据集成和分析,公开不可用的数据库以及环境问题和更多的努力需要克服这些障碍。
    Regenerative medicine and cosmetics are currently two outstanding fields for drug discovery. Although many pharmaceutical products for regenerative medicine and cosmetics have received approval by official agencies, several challenges are still needed to overcome, especially financial and time issues. As a result, drug repositioning, which is the usage of previously approved drugs for new treatment, stands out as a promising approach to tackle these problems. Recently, increasing scientific evidence is collected to demonstrate the applicability of this novel method in the field of regenerative medicine and cosmetics. Experts in drug development have also taken advantage of novel technologies to discover new candidates for repositioning purposes following computational approach, one of two main approaches of drug repositioning. Therefore, numerous repurposed candidates have obtained approval to enter the market and have witnessed financial success such as minoxidil and fingolimod. The benefits of drug repositioning are undeniable for regenerative medicine and cosmetics. However, some aspects still need to be carefully considered regarding this method including actual effectiveness during clinical trials, patent regulations, data integration and analysis, publicly unavailable databases as well as environmental concerns and more effort are required to overcome these obstacles.
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  • 文章类型: Journal Article
    甲状腺乳头状癌(PTC)是最常见的甲状腺癌,构成了越来越大的临床挑战。PTC表现出两个与年龄相关的峰值,已确定的危险因素包括家族史和辐射暴露。管理即使是低风险的,局部PTC病例仍然很复杂,人们对主动监测作为即时手术的替代方案越来越感兴趣。本研究采用单细胞RNA测序(scRNA-Seq)来探讨BRAF和RAS突变在PTC中的预测价值。阐明它们对疾病进展和结果的影响。分析强调了BRAF和RAS突变在肿瘤进展中的意义。特别是与侵袭性特征相关的独特BRAFV600E突变。该方法涉及PTC和正常样本的scRNA-Seq分析,揭示不同的细胞簇,并表明上调的BRAF和RAS基因。途径富集分析强调了PTC中改变的生物过程和免疫相关途径。该研究巩固了先前的研究,表明PTC中BRAF和RAS突变的患病率,具有不同分子特征的亚型,以及TERT启动子突变对疾病严重程度的影响。总之,本研究通过scRNA-Seq揭示了PTC中基因突变和细胞微环境的复杂相互作用。上调的BRAF和RAS基因表明了它们作为PTC驱动因子的作用,和途径富集揭示了免疫相关过程的改变。这种先前研究的综合增强了我们对PTC分子基础的理解,告知更好的预后和个性化的治疗方法。这些见解推动了PTC管理的发展,并为进一步的研究提供了方向。
    Papillary thyroid carcinoma (PTC) is the most common thyroid cancer, posing a growing clinical challenge. PTC exhibits two age-related peaks, with established risk factors including family history and radiation exposure. Managing even low-risk, localized PTC cases remain complex, with growing interest in active surveillance as an alternative to immediate surgery. This study employed single-cell RNA sequencing (scRNA-Seq) to explore the predictive value of BRAF and RAS mutations in PTC, shedding light on their impact on disease progression and outcomes. The analyses emphasized the significance of BRAF and RAS mutations in tumor advancement, particularly the unique BRAF V600E mutation associated with aggressive features. The methodology involved scRNA-Seq analysis of PTC and normal samples, unveiling distinct cell clusters and indicating upregulated BRAF and RAS genes. Pathway enrichment analysis highlighted altered biological processes and immune-related pathways in PTC. The study consolidated previous research showing the prevalence of BRAF and RAS mutations in PTC, subtypes with distinct molecular profiles, and the impact of TERT promoter mutations on disease severity. In summary, this study unveils the complex interplay of genetic mutations and the cellular microenvironment in PTC through scRNA-Seq. The upregulated BRAF and RAS genes suggest their roles as PTC drivers, and pathway enrichment reveals alterations in immune-related processes. This synthesis of prior research enhances our understanding of PTC\'s molecular foundations, informing better prognosis and personalized treatment approaches. These insights advance the landscape of PTC management and provide directions for further research.
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  • 文章类型: Journal Article
    目的:本研究旨在探讨使用维生素E缓解多囊卵巢综合征(PCOS)症状的可能性。方法:采用各种计算方法,包括利用复合靶途径方法的网络药理学,瑞士ADME,OSIRIS®属性资源管理器,pkCSM,PASS在线Web资源和MOLINSPIRATION®软件。此外,对10种受体进行了维生素E的计算机模拟分析.结果与讨论:我们的发现强调了维生素E在缓解PCOS方面的多种潜力。观察到的对激素的影响符合现有的PCOS关于囊肿发育的理论,进一步增强维生素E的治疗前景。结论:总之,我们的计算分析表明,维生素E具有作为缓解青少年PCOS的治疗药物的潜力.
    多囊卵巢综合征(PCOS)是一种常见病,影响许多女孩和年轻妇女在生育期间。PCOS会导致月经周期问题,血糖控制困难,有时不孕。不幸的是,目前还没有针对PCOS的特定治疗方法。这项研究着眼于维生素E是否有助于治疗年轻女性的PCOS。为了找出答案,研究人员使用先进的基于计算机的技术,并分析了维生素E如何与身体的各个部位相互作用,包括蛋白质和激素.维生素E似乎影响在PCOS和囊肿形成中起作用的激素。它还可能具有抗炎特性,可以帮助减轻PCOS的症状。总之,这项研究表明,维生素E可能是治疗青少年PCOS的一种有价值的选择.然而,在成为标准治疗之前,需要进一步的研究和临床试验来证实这些发现。这项研究为寻找PCOS的有效解决方案开辟了新的可能性,这可以大大提高许多年轻女性的生活质量。
    Aim: This study seeks to explore the possibility of using vitamin E to alleviate the symptoms of polycystic ovarian syndrome (PCOS). Methods: Various computational methods were employed, including network pharmacology utilizing a compound-target-pathway approach, Swiss ADME, OSIRIS® property explorer, pkCSM, PASS online web resource and MOLINSPIRATION® software. In addition, in silico analysis of vitamin E was performed with ten receptors. Results & discussion: Our findings highlight the diverse potential of vitamin E in alleviating PCOS. The observed influence on hormones is in line with existing PCOS theories regarding cyst development, further enhancing the therapeutic promise of vitamin E. Conclusion: In conclusion, our computational analysis indicates that vitamin E shows potential as a therapeutic agent for alleviating PCOS in adolescents.
    Polycystic ovarian syndrome (PCOS) is a common condition that affects many girls and young women during their reproductive years. PCOS can lead to problems with the menstrual cycle, difficulties with blood sugar control and sometimes infertility. Unfortunately, there\'s no specific treatment for PCOS yet. This study looked at whether vitamin E might be helpful in treating PCOS in young women. To find out, the researchers used advanced computer-based techniques and analyzed how vitamin E interacts with various parts of the body, including proteins and hormones. Vitamin E appears to influence hormones that play a role in PCOS and cyst formation. It may also have anti-inflammatory properties that could help reduce the symptoms of PCOS. In short, this study suggests that vitamin E might be a valuable option for treating PCOS in adolescents. However, further research and clinical trials are needed to confirm these findings before it can become a standard treatment. This research opens up new possibilities for finding effective solutions for PCOS, which can greatly improve the quality of life for many young women.
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  • 文章类型: Journal Article
    超重和肥胖,高血压,高血糖症,高脂血症,胰岛素抵抗(IR)与非传染性疾病(NCDs)密切相关,包括2型糖尿病,心血管疾病,中风,和癌症。得出不同的IR替代指数,并通过正常血糖-高胰岛素钳夹(EHC)测试进行验证。因此,使用计算方法以松田指数为参考来预测IR,本研究旨在确定非糖尿病年轻成年男性替代指数的最佳临界值和诊断准确性.
    对93名年轻男性(18-31岁)进行了横断面描述性研究。在空腹状态和口服葡萄糖耐量试验(OGTT)期间分析了葡萄糖和胰岛素的血清水平。此外,临床,生物化学,荷尔蒙,并确定人体测量特征和身体成分(DEXA)。检查了使用差异参数评估IR诊断准确性和截止值的计算方法,以及其他统计工具,使输出稳健。
    在最佳截止值下的最高灵敏度和特异性,分别,建立了胰岛素抵抗指数(HOMA-IR)的稳态模型(0.91;0.98;3.40),定量胰岛素敏感性检查指数(QUICKI)(0.98;0.96;0.33),甘油三酯-葡萄糖(TyG)-腰围指数(TyG-WC)(1.00;1.00;427.77),TyG-体重指数(TyG-BMI)(1.00;1.00;132.44),TyG腰围与身高比(TyG-WHtR)(0.98;1.00;2.48),腰围与身高比(WHtR)(1.00;1.00;0.53),腰围(WC)(1.00;1.00;92.63),身体质量指数(BMI)(1.00;1.00;28.69),全身脂肪百分比(TFM)(%)(1.00;1.00;31.07),安卓脂肪(AF)(%)(1.00;0.98;40.33),脂质积累产物(LAP)(0.84;1.00;45.49),瘦素(0.91;1.00;16.08),瘦素/脂联素比值(LAR)(0.84;1.00;1.17),空腹胰岛素(0.91;0.98;16.01)。
    计算方法用于确定诊断准确性和用于预防保健的IR的最佳截止值。
    UNASSIGNED: Overweight and obesity, high blood pressure, hyperglycemia, hyperlipidemia, and insulin resistance (IR) are strongly associated with non-communicable diseases (NCDs), including type 2 diabetes, cardiovascular disease, stroke, and cancer. Different surrogate indices of IR are derived and validated with the euglycemic-hyperinsulinemic clamp (EHC) test. Thus, using a computational approach to predict IR with Matsuda index as reference, this study aimed to determine the optimal cutoff value and diagnosis accuracy for surrogate indices in non-diabetic young adult men.
    UNASSIGNED: A cross-sectional descriptive study was carried out with 93 young men (ages 18-31). Serum levels of glucose and insulin were analyzed in the fasting state and during an oral glucose tolerance test (OGTT). Additionally, clinical, biochemical, hormonal, and anthropometric characteristics and body composition (DEXA) were determined. The computational approach to evaluate the IR diagnostic accuracy and cutoff value using difference parameters was examined, as well as other statistical tools to make the output robust.
    UNASSIGNED: The highest sensitivity and specificity at the optimal cutoff value, respectively, were established for the Homeostasis model assessment of insulin resistance index (HOMA-IR) (0.91; 0.98; 3.40), the Quantitative insulin sensitivity check index (QUICKI) (0.98; 0.96; 0.33), the triglyceride-glucose (TyG)-waist circumference index (TyG-WC) (1.00; 1.00; 427.77), the TyG-body mass index (TyG-BMI) (1.00; 1.00; 132.44), TyG-waist-to-height ratio (TyG-WHtR) (0.98; 1.00; 2.48), waist-to-height ratio (WHtR) (1.00; 1.00; 0.53), waist circumference (WC) (1.00; 1.00; 92.63), body mass index (BMI) (1.00; 1.00; 28.69), total body fat percentage (TFM) (%) (1.00; 1.00; 31.07), android fat (AF) (%) (1.00; 0.98; 40.33), lipid accumulation product (LAP) (0.84; 1.00; 45.49), leptin (0.91; 1.00; 16.08), leptin/adiponectin ratio (LAR) (0.84; 1.00; 1.17), and fasting insulin (0.91; 0.98; 16.01).
    UNASSIGNED: The computational approach was used to determine the diagnosis accuracy and the optimal cutoff value for IR to be used in preventive healthcare.
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    遗传疾病的基因鉴定对于开发新的诊断方法和个性化治疗方案至关重要。基因翻译的优先顺序是分子生物学领域的一个重要考虑因素,允许研究人员专注于最有希望的候选人进行进一步调查。
    在本文中,我们讨论了不同的方法来优先考虑翻译基因,包括使用计算工具和机器学习算法,以及实验技术,如敲低和过表达研究。我们还探讨了这些方法的潜在偏见和局限性,并提出了提高基因优先排序方法准确性和可靠性的策略。尽管已经为此目的开发了许多计算方法,因此,需要结合组织特异性信息的计算方法,以更准确地确定候选基因的优先次序.这样的方法应该提供组织特异性预测,对潜在疾病机制的见解,和更准确的基因优先级。
    使用先进的计算工具和机器学习算法对基因进行优先级排序,我们可以确定复杂疾病治疗干预的潜在目标。这是一种新兴的药物开发和个性化医疗方法。
    UNASSIGNED: Gene identification for genetic diseases is critical for the development of new diagnostic approaches and personalized treatment options. Prioritization of gene translation is an important consideration in the molecular biology field, allowing researchers to focus on the most promising candidates for further investigation.
    UNASSIGNED: In this paper, we discussed different approaches to prioritize genes for translation, including the use of computational tools and machine learning algorithms, as well as experimental techniques such as knockdown and overexpression studies. We also explored the potential biases and limitations of these approaches and proposed strategies to improve the accuracy and reliability of gene prioritization methods. Although numerous computational methods have been developed for this purpose, there is a need for computational methods that incorporate tissue-specific information to enable more accurate prioritization of candidate genes. Such methods should provide tissue-specific predictions, insights into underlying disease mechanisms, and more accurate prioritization of genes.
    UNASSIGNED: Using advanced computational tools and machine learning algorithms to prioritize genes, we can identify potential targets for therapeutic intervention of complex diseases. This represents an up-and-coming method for drug development and personalized medicine.
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  • 文章类型: Journal Article
    糖尿病性视网膜病变(DR)是视网膜微血管系统的衰弱性糖尿病疾病,是老年人可避免失明的主要原因。橙皮素是一种在柑橘物种中含量丰富的植物黄酮,在动物模型中具有神经保护特性。本研究旨在探讨橙皮素对大鼠自噬的神经保护作用。使用24只雄性大鼠并分配到以下组中:(i)媒介物组,(ii)DR组和(iii-iv)DR+橙皮素(50和100mg/kg)组。橙皮素治疗持续6周。对大鼠实施安乐死后,他们的眼睛被解剖以检测视网膜的生化和组织学变化。自噬标志物的定量,Beclin1/LC3/p62,并进行炎症标记。用苏木精和曙红和高碘酸希夫(PAS)染色后研究组织病理学变化。结果表明,橙皮素降低了糖尿病大鼠的PAS染色,减轻了组织病理学变化,恢复了苏木精和伊红染色的视网膜组织和层厚度。此外,橙皮素能降低TNF-α的mRNA表达水平(4.9倍),IL-1β(4.15倍),IL-6(4.6倍)和NFκB(5.2倍),以及蛋白质水平。这伴随着自噬蛋白的诱导,Beclin1和LC3-II.我们的结果提供了证据,橙皮素通过抑制炎症负担和诱导自噬来有效减轻DR的病理。经过广泛的临床检查,橙皮素可能被证明是治疗DR的有用选择。
    Diabetic retinopathy (DR) is a debilitating diabetic disorder of the retinal microvasculature and the main cause of avoidable blindness in old people. Hesperetin is a plant flavanone largely abundant in citrus species with neuroprotective properties in animal models. This study aimed to explore the neuroprotective and autophagy-enhancing effect of hesperetin in rats with DR. Twenty-four male rats were utilized and allocated to groups: (i) the vehicle group, (ii) DR group and (iii-iv) the DR + hesperetin (50 and 100 mg/kg) groups. Treatment with hesperetin continued for 6 weeks. After the rats were euthanized, their eyes were dissected to detect the biochemical and histological changes in the retinas. Quantification of autophagy markers, beclin 1/LC3/p62, and inflammation markers was performed. Histopathologic changes were investigated after staining with hematoxylin and eosin and periodic acid-Schiff (PAS). Results demonstrated that hesperetin decreased the PAS staining in diabetic rats and attenuated histopathological changes and restored retinal organization and thickness of layers in hematoxylin and eosin staining. Moreover, hesperetin reduced the level of mRNA expression for TNF-α (4.9-fold), IL-1β (4.15-fold), IL-6 (4.6-fold) and NFκB (5.2-fold), as well as the protein level. This was accompanied by induction of autophagy proteins, beclin 1 and LC3-II. Our results afford evidence that hesperetin is effective in alleviating the pathology of DR via suppressing the inflammatory burden and induction of autophagy. After extensive clinical examinations, hesperetin may prove to be a useful option for treatment of DR.
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  • 文章类型: Journal Article
    阿尔茨海默病(Alzheimer\'sDisease,AD)是一类特殊的神经退行性疾病,它被定义为一种尤其影响全球老年人的进行性疾病。AD感染的大脑显示认知功能下降,记忆丧失,和其他疲惫的症状。在这项研究中,我们专注于使用先进的生物信息学和下一代测序来探索各种多样化的阿尔茨海默病基因的基本簇,帕金森病和额颞叶痴呆患病病例。进行基因的显著差异表达分析(p值≤0.05,对数倍数变化≤0.05),其次是荟萃分析,这导致在可变案例研究中鉴定出20个保守基因。在20个保守基因中,观察到CASP8和PTPN11在AD代谢途径中显示出重要的调节机制,并进一步进行对接分析。此外,根据广泛的科学文献和(ADMET(吸收,Distribution,代谢,排泄,和毒性))属性检查。用筛选的配体和靶受体进行分子对接,结果鉴定迷迭香酸(RA)的CASP8具有对接评分(ΔG=-8.0kcal/mol);多奈哌齐(FDA药物)对接评分(ΔG=-7.3kcal/mol)(对照)。具有Carnosol配体的PTPN11受体导致对接评分(ΔG=-9.1kcal/mol)w.r.tTacrine(FDA药物)对接评分(ΔG=-8.0kcal/mol),然后进行MD模拟。这项研究将有助于鉴定潜在的天然化合物,未来的研究人员可以将其用于进一步验证,作为对抗各种神经退行性疾病突出AD的潜在候选药物。
    Alzheimer\'s Disease (AD) is a special class of neurodegenerative diseases demarcated as a progressive disorder affecting especially older adults globally. The AD-infected brain shows declination in cognitive functions, memory loss, and other exhausting symptoms. In this study, we focused on using advanced bioinformatics and next-generation sequencing to explore essential clusters of genes from various diversified Alzheimer\'s, Parkinson and Frontotemporal Dementia diseased cases. The significant differential expression analysis of genes (p-value ≤ 0.05, log fold change ≤ 0.05) was carried out, followed by meta-analysis, which resulted in the identification of 20 conserved genes across variable case studies. Out of 20 conserved genes, CASP8 and PTPN11 were observed to show essential regulatory mechanisms in AD metabolic pathways and proceeded further for docking analysis. Moreover, the natural compounds were screened for ligand library preparation based on extensive scientific literature and (ADMET (Absorption, Distribution, Metabolism, Excretion, and Toxicity)) property check. Molecular docking was carried out with screened ligands and target receptors, resulting in the identification of Rosmarinic acid (RA) with CASP8 having docked score (∆G = -8.0 kcal/mol); Donepezil (FDA drug) dock score (∆G = -7.3 kcal/mol) (control). PTPN11 receptor with Carnosol ligand resulted in docking score (∆G = -9.1 kcal/mol) w.r.t Tacrine (FDA drug) docked score (∆G = -8.0 kcal/mol) followed by MD simulation. This research will aid in the identification of potential natural compounds that future researchers can use for further validation as a potential candidate drug in combating various neurodegenerative diseases highlighting AD.
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  • 文章类型: Journal Article
    背景:耐甲氧西林金黄色葡萄球菌(MRSA)是多重耐药疾病的病原体,是主要的健康问题。目前,像万古霉素这样的抗生素,达托霉素,氟喹诺酮类药物,利奈唑胺,第五代头孢菌素和其他药物在市场上可用于治疗MRSA感染。
    方法:随着耐药病例的增加,研究人员正在积极研究对抗MRSA的替代策略,包括肽疗法的探索。本研究采用计算方法来展望潜在的抗菌肽(AMPs)。
    结果:根据理化性质,共探索了一百五十种抗菌肽。结果表明,ClavaninB是最合适的候选物。分子对接和分子动力学模拟结果表明MRSA靶蛋白的蛋白-肽相互作用,青霉素结合蛋白2a和Panton-Valentine杀白细胞素毒素,抗菌肽ClavaninB.
    结论:目前,抗菌肽数据库强调了ClavaninB作为抗HIV肽的作用。此外,这项研究提出ClavaninB作为一种可行的用于治疗MRSA的药物,强调其在MRSA感染管理中的潜在部署。
    BACKGROUND: Methicillin-resistant Staphylococcus aureus (MRSA) is a causative agent for multiple drug-resistant diseases and is a prime health concern. Currently, antibiotics like vancomycin, daptomycin, fluoroquinolones, linezolid, fifth-generation cephalosporin and others are available in the market for the treatment of MRSA infection.
    METHODS: With the increasing prevalence of drug-resistant cases, researchers are actively investigating alternative strategies to combat MRSA, including the exploration of peptide therapeutics. This study employed computational methods to prospect for potential Antimicrobial Peptides (AMPs).
    RESULTS: A total of One hundred and fifty antimicrobial peptides were explored based on physicochemical properties. The results showed that Clavanin B was the most appropriate candidate. Molecular Docking and Molecular Dynamics Simulation results showed the protein-peptide interaction of the MRSA target proteins, Penicillin Binding Protein 2a and Panton-Valentine Leukocidin Toxin, with the Antimicrobial Peptide Clavanin B.
    CONCLUSIONS: Currently, the antimicrobial peptide database highlights Clavanin B\'s role as an anti-HIV peptide. Moreover, this investigation proposes Clavanin B as a viable repurposed drug for treating MRSA, underscoring its potential deployment in the management of MRSA infections.
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  • 文章类型: Journal Article
    在2019年底出现COVID-19大流行之后,严重急性呼吸道综合症冠状病毒-2(SARS-CoV-2)经历了在遗传修饰获得的驱动下的动态进化,产生几种变体,这些变体被进一步分类为感兴趣的变体(VOI),世界卫生组织(WHO)监测中的变种(VUM)和关注变种(VOC)。目前,有五种SARS-CoV-2挥发性有机化合物(阿尔法,Beta,Delta,Gamma和Omicron),两个VOI(Lambda和Mu)和其他几个已在全球报道的VOI。在这项研究中,我们报告了一种天然化合物,姜黄素,作为受体结合域(RBD(S1))和人血管紧张素转换酶2(hACE2)结构域之间相互作用的潜在抑制剂,并通过实施现有技术的计算方法展示了其对Delta和Omicron变体的抑制潜力。这项研究首次揭示了姜黄素的更高的效率,特别是与其他先导化合物相比,阻碍了RBD(S1)与Delta和Omicron变体的hACE-2结构域之间的相互作用。我们研究了与野生型和其他变体相比,VOC的RBD(S1)尤其是Delta和Omicron变体的突变会影响其结构,因此改变了其与hACE2受体的结合。分子对接和分子动力学(MD)模拟分析在对接复合物的稳定性方面基本上支持了这一发现。这项研究提供了令人信服的证据,保证更深入地探索这些改变对鉴定的药物分子与Spike蛋白的结合的影响。强烈建议进一步研究它们在体内的潜在治疗效果。由RamaswamyH.Sarma沟通。
    After the emergence of the COVID-19 pandemic in late 2019, the severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) has undergone a dynamic evolution driven by the acquisition of genetic modifications, resulting in several variants that are further classified as variants of interest (VOIs), variants under monitoring (VUM) and variants of concern (VOC) by World Health Organization (WHO). Currently, there are five SARS-CoV-2 VOCs (Alpha, Beta, Delta, Gamma and Omicron), two VOIs (Lambda and Mu) and several other VOIs that have been reported globally. In this study, we report a natural compound, Curcumin, as the potential inhibitor to the interactions between receptor binding domain (RBD(S1)) and human angiotensin-converting enzyme 2 (hACE2) domains and showcased its inhibitory potential for the Delta and Omicron variants through a computational approach by implementing state of the art methods. The study for the first time revealed a higher efficiency of Curcumin, especially for hindering the interaction between RBD(S1) and hACE-2 domains of Delta and Omicron variants as compared to other lead compounds. We investigated that the mutations in the RBD(S1) of VOC especially Delta and Omicron variants affect its structure compared to that of the wild type and other variants and therefore altered its binding to the hACE2 receptor. Molecular docking and molecular dynamics (MD) simulation analyses substantially supported the findings in terms of the stability of the docked complexes. This study offers compelling evidence, warranting a more in-depth exploration into the impact of these alterations on the binding of identified drug molecules with the Spike protein. Further investigation into their potential therapeutic effects in vivo is highly recommended.Communicated by Ramaswamy H. Sarma.
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