Cofactor regeneration

辅因子再生
  • 文章类型: Journal Article
    维生素B5[D-泛酸(D-PA)]是一种必需的水溶性维生素,广泛用于食品和饲料工业。目前,相对较低的发酵效率限制了D-PA的工业应用。这里,使用系统的代谢工程策略构建了无质粒的D-PA超生产者。首先,丙酮酸通过删除非磷酸转移酶系统来富集,抑制丙酮酸竞争性分支,并动态地控制TCA循环。接下来,通过筛选限速酶PanBC并逐个调节该途径的其他酶,可以增强(R)-泛解酸途径。然后,为了增强NADPH的可持续性,通过新的“PEACES”系统实现NADPH再生,方法是(1)表达谷氨酸梭菌的NAD激酶基因ppnk和乙酰丁酸梭菌的NADP依赖性gapCcae,(2)敲除内源性sthA基因,在D-PA生物合成途径中与ilvC和panE相互作用。结合转录组分析,发现膜蛋白OmpC和TolR通过增加膜流动性促进D-PA外排。菌株PA132通过两阶段补料分批发酵产生的D-PA滴度为83.26g/L,这是迄今为止报道的最高D-PA滴度。这项工作为D-PA的工业生产建立了有竞争力的生产者,并为相关产品的生产提供了有效的策略。
    Vitamin B5 [D-pantothenic acid (D-PA)] is an essential water-soluble vitamin that is widely used in the food and feed industries. Currently, the relatively low fermentation efficiency limits the industrial application of D-PA. Here, a plasmid-free D-PA hyperproducer was constructed using systematic metabolic engineering strategies. First, pyruvate was enriched by deleting the non-phosphotransferase system, inhibiting pyruvate competitive branches, and dynamically controlling the TCA cycle. Next, the (R)-pantoate pathway was enhanced by screening the rate-limiting enzyme PanBC and regulating the other enzymes of this pathway one by one. Then, to enhance NADPH sustainability, NADPH regeneration was achieved through the novel \"PEACES\" system by (1) expressing the NAD+ kinase gene ppnk from Clostridium glutamicum and the NADP+-dependent gapCcae from Clostridium acetobutyricum and (2) knocking-out the endogenous sthA gene, which interacts with ilvC and panE in the D-PA biosynthesis pathway. Combined with transcriptome analysis, it was found that the membrane proteins OmpC and TolR promoted D-PA efflux by increasing membrane fluidity. Strain PA132 produced a D-PA titer of 83.26 g/L by two-stage fed-batch fermentation, which is the highest D-PA titer reported so far. This work established competitive producers for the industrial production of D-PA and provided an effective strategy for the production of related products.
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  • 文章类型: Journal Article
    发展绿色化学的关键方法是通过光催化将太阳能转化为生物分子的化学能。光催化可以促进氧化还原过程中烟酰胺辅因子的再生。烟酰胺辅因子仿生物质(NCB)是天然辅因子的经济替代品。这里,开发了使用石墨碳氮化物(g-C3N4)的NADH和还原NCB(NCBsred)的光催化再生。该过程涉及g-C3N4作为光催化剂,Cp*Rh(bpy)H2O2+作为电子介体,三乙醇胺作为电子给体,在光照下促进NAD和各种氧化NCB(NCBsox)的还原。值得注意的是,BANA+实现了48.32%的最高还原率,优于天然辅因子NAD+。电化学分析表明,辅因子的还原效率和容量取决于其氧化还原电位。此外,探索了一种偶联的光酶催化系统,用于通过旧黄色酶XenA还原4-酮异佛尔酮。在所有NCBsox和NAD+中,用BANA+获得超过99%的最高转化率。回收8次后,g-C3N4保持超过93.6%的催化效率。光催化辅因子再生在NAD+和NCBsox方面表现出其优异的性能。这项工作极大地促进了人工辅因子的光催化辅因子再生的发展及其潜在的应用。
    A key approach in developing green chemistry involves converting solar energy into chemical energy of biomolecules through photocatalysis. Photocatalysis can facilitate the regeneration of nicotinamide cofactors during redox processes. Nicotinamide cofactor biomimetics (NCBs) are economical substitutes for natural cofactors. Here, photocatalytic regeneration of NADH and reduced NCBs (NCBsred) using graphitic carbon nitride (g-C3N4) was developed. The process involves g-C3N4 as the photocatalyst, Cp*Rh(bpy)H2O2+ as the electron mediator, and Triethanolamine as the electron donor, facilitating the reduction of NAD+ and various oxidative NCBs (NCBsox) under light irradiation. Notably, the highest reduction yield of 48.32 % was achieved with BANA+, outperforming the natural cofactor NAD+. Electrochemical analysis reveals that the reduction efficiency and capacity of cofactors relies on their redox potentials. Additionally, a coupled photo-enzymatic catalysis system was explored for the reduction of 4-Ketoisophorone by Old Yellow Enzyme XenA. Among all the NCBsox and NAD+, the highest conversion ratio of over 99 % was obtained with BANA+. After recycled for 8 times, g-C3N4 maintained over 93.6 % catalytic efficiency. The photocatalytic cofactor regeneration showcases its outstanding performance with NAD+ as well as NCBsox. This work significantly advances the development of photocatalytic cofactor regeneration for artificial cofactors and its potential application.
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  • 文章类型: Journal Article
    背景:内酯是医学领域的重要化合物,材料和化学工业。这些柔性支架的有希望的途径之一是NAD(P)依赖性醇脱氢酶催化的二醇氧化内酯化,其依赖于高效的NAD(P)+再生系统的构建。
    结果:在这项研究中,建立了一种将马肝醇脱氢酶(HLADH)与合成的桥接黄素辅因子相结合的新型系统,用于内酯的生物合成。优化了该系统的反应条件,并从各种二醇中有效地获得了包括手性内酯在内的各种内酯。与以前报道的NAD(P)+再生系统相比,该系统具有较好的再生效率和产品收率。进一步应用两相系统解决了产品抑制问题,在300mM底物条件下获得80%的产率。
    结论:本研究提供了在温和条件下由二醇合成内酯的有效方法。我们相信该系统将是促进其他有价值化合物合成的有希望的替代方案。
    BACKGROUND: Lactones are important compounds in the field of medicine, material and chemical industry. One of the promising accesses to these flexible scaffolds is NAD(P)+-dependent alcohol dehydrogenases-catalyzed oxidative lactonization of diols, which relies on the construction of an efficient NAD(P)+ regeneration system.
    RESULTS: In this study, a novel system combining horse liver alcohol dehydrogenase (HLADH) with the synthetic bridged flavin cofactor was established for biosynthesis of lactones. The reaction conditions of this system were optimized and a variety of lactones including chiral lactones were efficiently obtained from various diols. Compared to the previously reported NAD(P)+-regeneration systems, this system showed better regeneration efficiency and product yield. A two-phase system was further applied to solve the problem of product inhibition, and 80% yield was obtained at the condition of 300 mM substrate.
    CONCLUSIONS: This study provides an efficient method to synthesis of lactones from diols under mild conditions. We believe this system will be a promising alternative to promote the synthesis of other valuable compounds.
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  • 文章类型: Journal Article
    富含电子的酚类底物可以源自木质素原料的解聚。获得的羟基肉桂酸单体的直接生物转化可用于生产高价值化学品,如α-氨基酸,然而,在碱性或苛刻的反应介质中,化学自氧化反应通常会阻碍反应。区域选择性O-甲基转移酶(OMT)是天然次级代谢途径中普遍存在的酶,其利用昂贵的共底物S-腺苷-1-甲硫氨酸(SAM)作为甲基化试剂改变羟基肉桂酸的物理化学性质。在这项研究中,我们设计了一个OMT来接受各种富含电子的酚醛底物,修饰的商业大肠杆菌菌株BL21(DE3)在体内再生SAM,并将其与工程化的氨裂解酶组合在一个锅中,从木质素衍生的阿魏酸产生I-DOPA前体I-veratyl甘氨酸的两个全细胞酶级联。
    蛋白质和菌株工程相结合。已经开发了两种工程酶(甲基转移酶和氨裂解酶)和工程大肠杆菌菌株(用于SAM辅因子的再生)的组合,以实现完全生物催化的一锅法甲基化-加氢胺化级联。作为一个例子,已经证明了由可再生木质素衍生的阿魏酸合成左旋甘氨酸,在高产量和优良的ee。
    Electron-rich phenolic substrates can be derived from the depolymerisation of lignin feedstocks. Direct biotransformations of the hydroxycinnamic acid monomers obtained can be exploited to produce high-value chemicals, such as α-amino acids, however the reaction is often hampered by the chemical autooxidation in alkaline or harsh reaction media. Regioselective O-methyltransferases (OMTs) are ubiquitous enzymes in natural secondary metabolic pathways utilising an expensive co-substrate S-adenosyl-l-methionine (SAM) as the methylating reagent altering the physicochemical properties of the hydroxycinnamic acids. In this study, we engineered an OMT to accept a variety of electron-rich phenolic substrates, modified a commercial E. coli strain BL21 (DE3) to regenerate SAM in vivo, and combined it with an engineered ammonia lyase to partake in a one-pot, two whole cell enzyme cascade to produce the l-DOPA precursor l-veratrylglycine from lignin-derived ferulic acid.
    Protein and strain engineering combined. The combination of two engineered enzymes (a methyltransferase and an ammonia lyase) and an engineered E. coli strain (for regeneration of the SAM cofactor) has been developed to enable a fully biocatalytic one‐pot methylation–hydroamination cascade. As an example, the synthesis of l ‐veratrylglycine from renewable lignin‐derived ferulic acid has been demonstrated, in high yield and excellent ee.
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  • 文章类型: Journal Article
    NAD(P)H辅因子在酶还原中的有效光解再生是生物催化中重要且难以捉摸的目标。它可以,原则上,例如,使用采用H2O作为牺牲还原剂的近红外光(NIR)驱动的人工光合作用系统来实现。为此,我们使用了TiO2/还原石墨烯量子点(r-GQD),结合一种新颖的铑电子介体,在NIR照射下持续原位供应NADPH用于醛酮还原酶(AKR)介导的不对称还原。这个上变频系统,其中在r-GQD和TiO2之间形成的Ti-O-C键实现了有效的界面电荷转移,能够在105分钟内以64%的产率有效地再生NADPH。基于此,获得药物中间体(R)-1-(3,5-双(三氟甲基)苯基)乙-1-醇,84%的收益率和99.98%的ee,通过还原相应的酮。光酶系统可与聚合电子介体循环利用,在6个循环后,它保持了其原始催化效率的66%和优异的对映选择性(99.9%ee)。
    Effective photolytic regeneration of the NAD(P)H cofactor in enzymatic reductions is an important and elusive goal in biocatalysis. It can, in principle, be achieved using a near-infrared light (NIR) driven artificial photosynthesis system employing H2O as the sacrificial reductant. To this end we utilized TiO2/reduced graphene quantum dots (r-GQDs), combined with a novel rhodium electron mediator, to continuously supply NADPH in situ for aldo-keto reductase (AKR) mediated asymmetric reductions under NIR irradiation. This upconversion system, in which the Ti-O-C bonds formed between r-GQDs and TiO2 enabled efficient interfacial charge transfer, was able to regenerate NADPH efficiently in 64 % yield in 105 min. Based on this, the pharmaceutical intermediate (R)-1-(3,5-bis(trifluoromethyl)phenyl)ethan-1-ol was obtained, in 84 % yield and 99.98 % ee, by reduction of the corresponding ketone. The photo-enzymatic system is recyclable with a polymeric electron mediator, which maintained 66 % of its original catalytic efficiency and excellent enantioselectivity (99.9 % ee) after 6 cycles.
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  • 文章类型: Journal Article
    (2S)-三二酚,多酚类黄酮,在保健品和食品添加剂中发现了广泛的应用。然而,植物来源的(2S)-紫菜醇的有限可用性不能满足市场需求。微生物生产(2S)-麦片醇面临挑战,包括黄酮3'-羟化酶/细胞色素P450还原酶(F3'H/CPR)的低催化效率,前体补充不足,和不足的NADPH再生。本研究系统地设计了Yarrowialipolytica,用于高水平的(2S)-乙二酚生产。在这样做的时候,F3\'H/CPR的表达是平衡的,通过缓解莽草酸途径的反馈抑制来增强前体的供应,促进脂肪酸β-氧化,并增加合成途径基因的拷贝数。这些策略,结合NADPH再生,实现了423.6mg/L的(2S)-烯酮醇滴度。最后,在补料分批发酵中,获得了显著的6.8g/L(2S)-奥利多醇,代表迄今为止报道的最高从头微生物滴度,为工业生产铺平了道路。
    (2S)-Eriodictyol, a polyphenolic flavonoid, has found widespread applications in health supplements and food additives. However, the limited availability of plant-derived (2S)-eriodictyol cannot meet the market demand. Microbial production of (2S)-eriodictyol faces challenges, including the low catalytic efficiency of flavone 3\'-hydroxylase/cytochrome P450 reductase (F3\'H/CPR), insufficient precursor supplementation, and inadequate NADPH regeneration. This study systematically engineered Yarrowia lipolytica for high-level (2S)-eriodictyol production. In doing this, the expression of F3\'H/CPR was balanced, and the supply of precursors was enhanced by relieving feedback inhibition of the shikimate pathway, promoting fatty acid β-oxidation, and increasing the copy number of synthetic pathway genes. These strategies, combined with NADPH regeneration, achieved an (2S)-eriodictyol titer of 423.6 mg/L. Finally, in fed-batch fermentation, a remarkable 6.8 g/L (2S)-eriodictyol was obtained, representing the highest de novo microbial titer reported to date and paving the way for industrial production.
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  • 文章类型: Journal Article
    乙醛是葡萄酒中常见的重要羰基化合物。高浓度的乙醛会影响葡萄酒的风味,并对人体健康产生不利影响。酿酒酵母中的醇脱氢酶I(ADH1)在辅因子存在下催化乙醛还原为乙醇的反应,显示出降低葡萄酒中乙醛含量的潜力。在这项研究中,基于密码子优化,ADH1在毕赤酵母GS115中成功表达。然后,通过用优化的启动子替换其启动子并增加表达盒的拷贝数来提高ADH1的表达水平,用镍柱亲和层析纯化ADH1。纯化的ADH1酶活性达到605.44±44.30U/mg。ADH1对葡萄酒中乙醛含量的影响结果表明,在添加5mMNADH和ADH1的催化下,葡萄酒样品的乙醛含量从168.05±0.55降至113.17±6.08mg/L,通过辅因子再生从135.53±4.08降至52.89±2.20mg/L。我们的研究提供了一种通过酶催化降低葡萄酒中乙醛含量的新方法。
    Acetaldehyde is an important carbonyl compound commonly detected in wines. A high concentration of acetaldehyde can affect the flavor of wines and result in adverse effects on human health. Alcohol dehydrogenase I (ADH1) in Saccharomyces cerevisiae catalyzes the reduction reaction of acetaldehyde into ethanol in the presence of cofactors, showing the potential to reduce the content of acetaldehyde in wines. In this study, ADH1 was successfully expressed in Pichia pastoris GS115 based on codon optimization. Then, the expression level of ADH1 was enhanced by replacing its promoter with optimized promoters and increasing the copy number of the expression cassette, with ADH1 being purified using nickel column affinity chromatography. The enzymatic activity of purified ADH1 reached 605.44 ± 44.30 U/mg. The results of the effect of ADH1 on the content of acetaldehyde in wine revealed that the acetaldehyde content of wine samples was reduced from 168.05 ± 0.55 to 113.17 ± 6.08 mg/L with the addition of 5 mM NADH and the catalysis of ADH1, and from 135.53 ± 4.08 to 52.89 ± 2.20 mg/L through cofactor regeneration. Our study provides a novel approach to reducing the content of acetaldehyde in wines through enzymatic catalysis.
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  • 文章类型: Journal Article
    NAD+依赖性甲酸脱氢酶(FDH)催化甲酸和NAD+的转化以产生二氧化碳和NADH。该反应在生物技术上很重要,因为FDH广泛用于各种酶合成中的NADH再生。然而,这种多功能酶在工业应用中的主要缺点是活性低,要求其大量利用以达到最佳的工艺条件。这里,与来自假单胞菌属的FDH相比,来自单一芽孢杆菌(BsFDH)的FDH的生化和催化特性得到了表征。101(PsFDH),在各种生物催化反应中常用的FDH。数据显示,BsFDH具有较高的甲酸氧化活性,在25°C时的kcat值为15.3±1.9s-1,而PsFDH为7.7±1.0s-1。在最佳温度(60°C)下,BsFDH表现出比PsFDH高6倍的活性。BsFDH表现出更高的pH稳定性和对叠氮化钠和H2O2失活的优异耐受性,显示与PsFDH相比,叠氮化物抑制的Ki值高200倍,并且在0.5%H2O2存在下保持稳定。BsFDH作为辅因子再生系统的应用,通过HadA的反应对4-硝基苯酚进行脱毒,证明了其产生H2O2副产物。使用BsFDH的生物催化级联表现出明显优异的转化活性,因为该系统良好地耐受H2O2。总之,数据表明,BsFDH是一种稳健的酶,适合未来在工业生物技术中的应用。
    NAD+ -dependent formate dehydrogenase (FDH) catalyzes the conversion of formate and NAD+ to produce carbon dioxide and NADH. The reaction is biotechnologically important because FDH is widely used for NADH regeneration in various enzymatic syntheses. However, major drawbacks of this versatile enzyme in industrial applications are its low activity, requiring its utilization in large amounts to achieve optimal process conditions. Here, FDH from Bacillus simplex (BsFDH) was characterized for its biochemical and catalytic properties in comparison to FDH from Pseudomonas sp. 101 (PsFDH), a commonly used FDH in various biocatalytic reactions. The data revealed that BsFDH possesses high formate oxidizing activity with a kcat value of 15.3 ± 1.9 s-1 at 25°C compared to 7.7 ± 1.0 s-1 for PsFDH. At the optimum temperature (60°C), BsFDH exhibited 6-fold greater activity than PsFDH. The BsFDH displayed higher pH stability and a superior tolerance toward sodium azide and H2 O2 inactivation, showing a 200-fold higher Ki value for azide inhibition and remaining stable in the presence of 0.5% H2 O2 compared to PsFDH. The application of BsFDH as a cofactor regeneration system for the detoxification of 4-nitrophenol by the reaction of HadA, which produced a H2 O2 byproduct was demonstrated. The biocatalytic cascades using BsFDH demonstrated a distinct superior conversion activity because the system tolerated H2 O2 well. Altogether, the data showed that BsFDH is a robust enzyme suitable for future application in industrial biotechnology.
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  • 文章类型: Journal Article
    脂肪族ω-氨基脂肪酸(ω-AFAs)和α,ω-二胺(α,ω-DMs)是生产尼龙的必需单体。开发ω-AFAs和α的可持续生物合成路线,ω-DMs对于应对气候变化带来的挑战至关重要。在这里,我们构建了一个前所未有的热力学有利的多酶级联(TherFavMEC),用于ω-AFAs和α的高效可持续生物合成,来自廉价α的ω-DMs,ω-二羧酸(α,ω-DA)。TherFavMEC是通过整合生物合成分析工具开发的,反应吉布斯自由能计算,热力学平衡转移策略和辅因子(NADPH&ATP)再生系统。由己二酸(AA)得到的6-氨基己酸(6-ACA)的摩尔产率为92.3%,而从6-ACA到1,6-己二胺(1,6-HMD)的摩尔产率为96.1%,明显高于以前报道的路线。此外,ω-AFAs和α的生物合成,ω-DMs来自20.0mMα,还进行了ω-DA(C6-C9),给出11.2mM1,6-HMD(56.0%产率),14.8mM1,7-庚二胺(74.0%产率),17.4mM1,8-辛二胺(87.0%产率),和19.7mM1,9-壬二胺(98.5%产率),分别。1,9-壬二胺的滴度,1,8-辛二胺,1,7-庚二胺和1,6-HMD提高了328倍,1740倍,与以前的工作相比是87倍和3.8倍。因此,这项工作对ω-AFAs和α的生物生产具有巨大的潜力,ω-DMs。
    Aliphatic ω-amino fatty acids (ω-AFAs) and α,ω-diamines (α,ω-DMs) are essential monomers for the production of nylons. Development of a sustainable biosynthesis route for ω-AFAs and α,ω-DMs is crucial in addressing the challenges posed by climate change. Herein, we constructed an unprecedented thermodynamically favorable multi-enzyme cascade (TherFavMEC) for the efficient sustainable biosynthesis of ω-AFAs and α,ω-DMs from cheap α,ω-dicarboxylic acids (α,ω-DAs). This TherFavMEC was developed by incorporating bioretrosynthesis analysis tools, reaction Gibbs free energy calculations, thermodynamic equilibrium shift strategies and cofactor (NADPH&ATP) regeneration systems. The molar yield of 6-aminohexanoic acid (6-ACA) from adipic acid (AA) was 92.3 %, while the molar yield from 6-ACA to 1,6-hexanediamine (1,6-HMD) was 96.1 %, which were significantly higher than those of previously reported routes. Furthermore, the biosynthesis of ω-AFAs and α,ω-DMs from 20.0 mM α,ω-DAs (C6-C9) was also performed, giving 11.2 mM 1,6-HMD (56.0 % yield), 14.8 mM 1,7-heptanediamine (74.0 % yield), 17.4 mM 1,8-octanediamine (87.0 % yield), and 19.7 mM 1,9-nonanediamine (98.5 % yield), respectively. The titers of 1,9-nonanediamine, 1,8-octanediamine, 1,7-heptanediamine and 1,6-HMD were improved by 328-fold, 1740-fold, 87-fold and 3.8-fold compared to previous work. Therefore, this work holds great potential for the bioproduction of ω-AFAs and α,ω-DMs.
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  • 文章类型: Journal Article
    l-酪氨酸,一种芳香的非必需氨基酸,是许多重要化工产品的原料,包括左旋多巴,白藜芦醇,和羟基酪醇。它广泛用于食品中,药物,和化学工业。有许多关于微生物合成l-酪氨酸的研究,然而,l-酪氨酸效价低限制了工业大规模生产。为了提高大肠杆菌中L-酪氨酸的产量,莽草酸途径中关键酶的表达上调或下调。对1-酪氨酸转运系统和乙酸生物合成途径进行了修饰,以进一步提高1-酪氨酸的产量。此外,将磷酸转酮酶途径与辅因子工程结合引入,以将碳通量重定向到莽草酸途径。最后,在适应性实验室进化到低pH值后,获得了最佳菌株。该菌株在5-L发酵罐中可在62小时内产生92.5g/L的l-酪氨酸,产量为0.266g/g葡萄糖。
    l-Tyrosine, an aromatic non-essential amino acid, is the raw material for many important chemical products, including levodopa, resveratrol, and hydroxytyrosol. It is widely used in the food, drug, and chemical industries. There are many studies on the synthesis of l-tyrosine by microorganisms, however, the low titer of l-tyrosine limited the industrial large-scale production. In order to enhance l-tyrosine production in Escherichia coli, the expression of key enzymes in the shikimate pathway was up- or down-regulated. The l-tyrosine transport system and the acetic acid biosynthesis pathway were modified to further enhance l-tyrosine production. In addition, the phosphoketolase pathway was introduced in combination with cofactor engineering to redirect carbon flux to the shikimate pathway. Finally, after adaptive laboratory evolution to low pH an optimal strain was obtained. The strain can produce 92.5 g/L of l-tyrosine in a 5-L fermenter in 62 h, with a yield of 0.266 g/g glucose.
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