Glass catfish ( Kryptopterus vitreolus) are notable in the aquarium trade for their highly transparent body pattern. This transparency is due to the loss of most reflective iridophores and light-absorbing melanophores in the main body, although certain black and silver pigments remain in the face and head. To date, however, the molecular mechanisms underlying this transparent phenotype remain largely unknown. To explore the genetic basis of this transparency, we constructed a chromosome-level haplotypic genome assembly for the glass catfish, encompassing 32 chromosomes and 23 344 protein-coding genes, using PacBio and Hi-C sequencing technologies and standard assembly and annotation pipelines. Analysis revealed a premature stop codon in the putative albinism-related tyrp1b gene, encoding tyrosinase-related protein 1, rendering it a nonfunctional pseudogene. Notably, a synteny comparison with over 30 other fish species identified the loss of the endothelin-3 ( edn3b) gene in the glass catfish genome. To investigate the role of edn3b, we generated edn3b -/- mutant zebrafish, which exhibited a remarkable reduction in black pigments in body surface stripes compared to wild-type zebrafish. These findings indicate that edn3b loss contributes to the transparent phenotype of the glass catfish. Our high-quality chromosome-scale genome assembly and identification of key genes provide important molecular insights into the transparent phenotype of glass catfish. These findings not only enhance our understanding of the molecular mechanisms underlying transparency in glass catfish, but also offer a valuable genetic resource for further research on pigmentation in various animal species.
玻璃猫鱼（ Kryptopterus vitreolus）是一种流行的观赏鱼，因其身体极其透明而广受喜爱。虽然其面部和头部保留了一些黑色和银色的色素，但其主体部分失去了大部分的反射性彩虹细胞和吸光性黑素细胞。然而，迄今为止，这种透明表型的分子机制在很大程度上仍是未知的。为了找出导致这种迷人透明感的一些潜在遗传线索，我们通过整合PacBio和Hi-C测序技术以及一系列标准的组装和注释流程，为玻璃猫鱼构建了包含32条染色体和23 344个蛋白质编码基因的染色体级单体型基因组组装。同时，我们在推测的与白化病相关的 tyrp1b基因（编码酪氨酸酶相关蛋白1）中发现了一个提前终止密码子，导致其成为一个无功能的假基因。有趣的是，我们还通过与30多种其他鱼类进行同线性比较，在玻璃猫鱼基因组中发现了内皮素-3（ edn3b）基因的缺失。随后，我们生成了 edn3b-/-突变型斑马鱼，并观察到与野生型斑马鱼相比，其体表条纹的黑色色素显著减少。换言之，验证得出 edn3b基因的缺失在一定程度上促成了玻璃鲶的透明表型。我们为玻璃猫鱼建立了高质量的染色体级基因组组装，并确定了几个带有透明表型分子线索的重要基因。该研究结果不仅提高了我们对玻璃鲶透明表型分子机制的理解，而且为深入研究各种动物的色素沉着提供了有价值的遗传资源。.

Type IV pili (T4P) are versatile proteinaceous protrusions that mediate diverse bacterial processes, including adhesion, motility, and biofilm formation. Aeromonas hydrophila, a Gram-negative facultative anaerobe, causes disease in a wide range of hosts. Previously, we reported the presence of a unique Type IV class C pilus, known as tight adherence (Tad), in virulent Aeromonas hydrophila (vAh). In the present study, we sought to functionalize the role of Tad pili in the pathogenicity of A. hydrophila ML09-119. Through a comprehensive comparative genomics analysis of 170 A. hydrophila genomes, the conserved presence of the Tad operon in vAh isolates was confirmed, suggesting its potential contribution to pathogenicity. Herein, the entire Tad operon was knocked out from A. hydrophila ML09-119 to elucidate its specific role in A. hydrophila virulence. The absence of the Tad operon did not affect growth kinetics but significantly reduced virulence in catfish fingerlings, highlighting the essential role of the Tad operon during infection. Biofilm formation of A. hydrophila ML09-119 was significantly decreased in the Tad operon deletant. Absence of the Tad operon had no effect on sensitivity to other environmental stressors, including hydrogen peroxide, osmolarity, alkalinity, and temperature; however, it was more sensitive to low pH conditions. Scanning electron microscopy revealed that the Tad mutant had a rougher surface structure during log phase growth than the wildtype strain, indicating the absence of Tad impacts the outer surface of vAh during cell division, of which the biological consequences are unknown. These findings highlight the role of Tad in vAh pathogenesis and biofilm formation, signifying the importance of T4P in bacterial infections.

Chlorpyrifos is widely used across the world as an organophosphate insecticide and frequently contaminates freshwater bodies through runoff from agricultural fields. In the laboratory, static bioassays were undertaken to examine differences in acute toxicity caused by exposure to the technical grade (94% a.i.) and an emulsifiable concentrate (20% EC) of chlorpyrifos to two species of freshwater fish, Labeo rohita and Mystus vittatus. The recovery of actual chlorpyrifos concentrations varied from 83% (technical grade, T) to 89% (emulsifiable concentrate, F) after two hours in water. The susceptibilities of the two fish species to the two types of chlorpyrifos varied. The 96-h LC50 values for T and F chlorpyrifos in L. rohita were 68 and 36 µg/L, respectively, and 120 and 62 µg/L in M. vittatus, respectively. As the exposure period was extended, the LC50 values gradually decreased. LC50 values between the technical grade and formulation were compared following the criteria of Mayer et al. (1986), Schmuck et al. (1994), APHA (1995), and Demetrio et al. (2014). It was concluded from the study that the emulsifiable concentrate (20% EC) of chlorpyrifos was more toxic than technical-grade chlorpyrifos.

BACKGROUND: Walking catfish, Clarias batrachus is one of the native and most popular freshwater catfish species in Indonesia. However, cultivation faces challenges, particularly due to the scarcity of larvae resulting from underdeveloped breeding technologies. Cryopreservation is a method of storing sperm to maintain viability for a long period and support the breeding technology of the fish. Cryoprotectant, in this context, plays an important role in determining the success of sperm cryopreservation.
OBJECTIVE: To determine the best type and concentration of cryoprotectant for cryopreservation of walking catfish sperm.
METHODS: A total of five different types of cryoprotectants, namely DMSO, glycerol, ethyl glycol, ethanol, and methanol, were tested at four concentration levels namely 0%, 5%, 10%, 15%, and 20%, each with four replications.
RESULTS: The type and concentration of cryoprotectant had a significant effect on sperm motility and viability (P < 0.05). The best outcomes were obtained with 5% DMSO and ethyl glycol, 10% glycerol and methanol, as well as 15% ethanol.
CONCLUSIONS: The highest motility and viability values were obtained with 5% DMSO, resulting in its recommendation for cryopreservation of walking catfish sperm. Doi.org/10.54680/fr24510110612.

Edwardsiella ictaluri is a Gram-negative, facultative intracellular bacterium that causes enteric septicemia in catfish (ESC). The RNA chaperone Hfq (host factor for phage Qβ replication) facilitates gene regulation via small RNAs (sRNAs) in various pathogenic bacteria. Despite its significance in other bacterial species, the role of hfq in E. ictaluri remains unexplored. This study aimed to elucidate the role of hfq in E. ictaluri by creating an hfq mutant (EiΔhfq) through in-frame gene deletion and characterization. Our findings revealed that the Hfq protein is highly conserved within the genus Edwardsiella. The deletion of hfq resulted in a significantly reduced growth rate during the late exponential phase. Additionally, EiΔhfq displayed a diminished capacity for biofilm formation and exhibited increased motility. Under acidic and oxidative stress conditions, EiΔhfq demonstrated impaired growth, and we observed elevated hfq expression when subjected to in vitro and in vivo stress conditions. EiΔhfq exhibited reduced survival within catfish peritoneal macrophages, although it had no discernible effect on the adherence and invasion of epithelial cells. The infection model revealed that hfq is needed for bacterial persistence in catfish, and its absence caused significant virulence attenuation in catfish. Finally, the EiΔhfq vaccination completely protected catfish against subsequent EiWT infection. In summary, these results underscore the pivotal role of hfq in E. ictaluri, affecting its growth, motility, biofilm formation, stress response, and virulence in macrophages and within catfish host.

A major challenge in agriculture, horticulture and aquaponics practices is the reduction of mineral fertilisers and peat to reduce CO2 emissions and increase sustainability. This study used a three-phase-natural fertiliser, the Humicacid Fiber-Substrate (HFS), made from natural regenerative organic and mineral-fractions (Humus-Mineral-Complex), to reduce the peat content in plant pots for aquaponics farming. Basil (Ocimum basilicum) growth was compared with i) 100% standard media substrate (\"Einheitserde\", white peat 80%, clay 20%), and ii) 85% \"Einheitserde\" and 15% of HFS under irrigation with aquaculture process waters from an extensive and intensive production of African catfish (Clarias gariepinus) under coupled aquaponic conditions. The substitution with 15% HFS and use of intensive fish water resulted in comparable plant growth to a fertiliser solution as control, and in higher leaf width and leaf green weight and lower root dry weight compared with the standard media substrate \"Einheitserde\". Basil leaf chlorophyll content from the aquaponics was higher compared with local market plants. This suggests the possible substitution of the peat substrate \"Einheitserde\" with at least 15% HFS to reduce the natural peat fraction. Further studies on crop-specific substrates are needed to reduce peat in aquaponics farming plant cultivation.

Bacterial intestinal inflammation is a common disease of yellow catfish (Pelteobagrus fulvidraco) in high-density aquaculture. Understanding the interactions between host and intestinal bacteria is helpful to intestinal inflammatory disease control. Here, we constructed a model of intestinal inflammation after Aeromonas hydrophila infection in yellow catfish, and characterized variations in gene expression and microbiome in the gut through high-throughput sequencing. Furthermore, host gene-microbiome interactions were identified. Histology observation showed disordered distribution of columnar epithelial cells and decrease of goblet cells in intestine. A total of 4741 genes showed differentially expression, mostly in comparisons between 12 hpi group with each other groups respectively, including control, 24 hpi and 48 hpi groups. These genes were enriched in immune-related pathways including the IL-17 signaling pathway, triggering strong inflammatory response at the invading stage within 12 h. Subsequently, the host strengthened energy consumption by activating carbohydrate and lipid metabolism pathways to repair the intestinal mucosal immune defense line. In addition, fish with A. hydrophila infection show decreased richness of gut microbial, reduced relative abundance of probiotics including Akkermansia, and elevated pathogenic bacteria such as Plesimonas. An integrative analysis identified A. hydrophila-related genes, such as il22 and stat3, for which expression level is close associated with the shift of A. hydrophila-related bacteria relative abundance, such as Akkermansia and Cetobacterium. Aside from picturing the variations of intestine gene expression and mucosal microbiome of yellow catfish coping with A. hydrophila infection, our study probed the underlying host-microbe interactions in A. hydrophila infection induced intestinal inflammatory, providing new insights for disease control in aquaculture.

OBJECTIVE: Over the past decade, catfish farming has increased in Southeast Asia. However, there has been no existing for pharmacokinetic data in the hybrid catfish (Clarias macrocephalus x C. gariepinus).
OBJECTIVE: This study was designed to evaluate the pharmacokinetic characteristics of oxytetracycline (OTC) in the hybrid catfish, following single intravascular (IV) or oral (PO) administration at a single dosage of 50 mg/kg body weight (BW).
METHODS: In total, 140 catfish (each about 100-120 g BW) were divided into two groups (n = 70). Blood samples (0.6-0.8 mL) were collected from ventral caudal vein at pre-assigned times up to 144 h (sparse samples design). OTC plasma concentrations were analyzed using high-performance liquid chromatography-photodiode array detector.
RESULTS: The pharmacokinetic parameter of OTC was evaluated using a non-compartment model. OTC plasma concentrations were detectable for up to 144 and 120 h after IV and PO, respectively. The elimination half-life value of OTC was long with slow clearance after IV administration in hybrid catfish. The average maximum concentration value of OTC was 2.72 µg/mL with a time at the maximum concentration of 8 h. The absolute PO bioavailability was low (2.47%).
CONCLUSIONS: These results showed that PO administration of OTC at a dosage of 50 mg/kg BW was unlikely to be effective for clinical use in catfish. The pharmacodynamic properties and clinical efficacy of OTC after multiple medicated feed are warranted.

Parasites can change the behaviour of their hosts, but little attention has been given to the relationship between parasite effects on host behaviour and colouration. The correlation between disrupted melanin production and alterations in various physiological and behavioural traits, e.g., aggression, shoaling behaviour, stress responsiveness and sensitivity to brood parasitism, has been reported in albino fish. We hypothesized that parasitism would affect the behaviour of albino and pigmented conspecifics differently. In laboratory conditions, we infested a group of pigmented and a group of albino individuals of European catfish Silurus glanis with glochidia of two Uninoidea species, namely, the native species Anodonta anatina and the invasive species Sinanodonta woodiana, and investigated the effect of parasitization on the boldness and sheltering behaviour of the hosts. The behaviour of albino individuals differed from that of pigmented conspecifics both before and after parasitization. Parasitization with glochidia did not affect sheltering behaviour, but it increased boldness in pigmented individuals, whereas albino individuals did not exhibit any changes in behaviour. Sheltering results were consistent in both binomial and continuous variable analyses, whereas boldness was significant only in the binomial analyses. Our results demonstrate the reduced susceptibility of the albino phenotype to glochidia infestation, together with questions of the choice of analyses.

Soil salinity and freshwater scarcity are among the major global threats to sustainable development owing to their adverse impacts on agricultural productivity especially in arid and semi-arid regions. There is a need to find sustainable alternatives such as salt-tolerant crops and fish to improve people\'s livelihoods in marginal areas. This study aimed to maximize the growth and yield of striped catfish (Pangasianodon hypophthalmus) and quinoa (Chenopodium quinoa) cultivated under a biosaline integrated aquaculture-agriculture system. The study was laid in a randomized completely block design of three saline effluent treatments under three replicates: 5000 ppm (T1), 10,000 ppm (T2), 15,000 ppm (T3), and control (T0). Agro-morphological and physiological attributes of quinoa were measured. The crop yield in biomass and mineral element composition was also studied. Additionally, fish growth performance parameters such as feed intake and efficiency, growth, and survival rate were also calculated. Our results indicated that irrigating quinoa with saline aquaculture effluents above 10,000 ppm enhanced the plant growth, yield, and nutrient content of seeds. Furthermore, rearing striped catfish in saline water reaching up to 15,000 ppm did not have adverse impacts on the growth and survival of fish. Overall, integrating catfish and quinoa production under a salinity regime of 10,000 ppm could be a potential solution to ensuring alternative food sources in marginal areas.