Carps

鲤鱼
  • 文章类型: Journal Article
    银鲤鱼介导的生物控制技术通常被提倡用于控制富营养化水体中的蓝藻水华,通常富含砷(As)。然而,在富含砷的富营养化水中,鲤鱼对蓝藻水华的生物控制过程中砷的转移和命运仍不清楚。基于模拟生态系统实验,研究了由silp控制的铜绿微囊藻水华期间,silp中As的积累以及水藻-silver系统中As的转移和命运。铜绿微囊藻对As(V)表现出较高的耐受性。鲤鱼不同组织中As的积累量不同,如下:肠>肝>刺>皮肤>肌肉。鲤鱼摄入富含砷的铜绿微囊藻之后,作为在肠道中的积累,肝脏,吉尔,在消化和皮肤接触的作用下,鲤鱼的皮肤得到增强。与无藻系统相比,作为在肠道中的积累,肝脏,吉尔,银鲤鱼的皮肤增加了1.1、3.3、3.3和9.6倍,分别,在铜绿微囊藻系统中孵育30天后,而肌肉中As的积累仅略微增加0.56mg/kg。这项工作揭示了鲤鱼在藻类控制过程中As的转移和命运,阐明了砷在水-藻-银鲤鱼系统中的积累机理,丰富了我们对富含砷的富营养化水中生物累积和转化的理解,为评估和预测As在水-藻-鲤鱼系统中的迁移和富集提供了科学依据。
    Silver carp mediated biological control techniques are often advocated for controlling cyanobacteria blooms in eutrophic water, which are often enriched with arsenic (As). However, the transfer and fate of As during the biological control of cyanobacteria blooms by silver carp in As-rich eutrophic water remain unclear. Based on the simulated ecosystem experiment, the accumulation of As in silver carp and the transfer and fate of As in the water-algae-silver carp system during Microcystis aeruginosa blooms controlled by silver carp were investigated. Microcystis aeruginosa showed high tolerance to As(V). The accumulation of As in different tissues of silver carp was different, as follows: intestine > liver > gill > skin > muscle. After silver carp ingested As-rich Microcystis aeruginosa, As accumulation in the intestine, liver, gill, and skin of silver carp was enhanced under the action of digestion and skin contact. Compared with the system without algal, As accumulation in the intestine, liver, gill, and skin of silver carp increased by 1.1, 3.3, 3.3, and 9.6 times, respectively, after incubation for 30 days in the system with Microcystis aeruginosa, while the accumulation of As in the muscle was only slightly increased by 0.56 mg/kg. This work revealed the transfer and fate of As during algal control by silver carp, elucidated the accumulation mechanism of As in water-algae-silver carp system, enriched our understanding of As bioaccumulation and transformation in As-rich eutrophication water, and provided a scientific basis for assessing and predicting As migration and enrichment in water-algae-silver carp system.
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  • 文章类型: Journal Article
    诸如数字射线照相和超声检查之类的医学成像技术是非侵入性的,可以为检查鱼类的内部器官和结构提供精确的结果。通过使用诸如鳞片之类的身体部位作为其下方器官的标记,可以进一步提高其有效性。这项研究利用数字X线摄影和超声检查中的尺度数作为界标,对肌肉进行非侵入性评估,骨头,以及鲤鱼(Cyprinuscarpio)的内部和生殖器官的图像。在鱼的腹侧和侧面进行了数字X射线摄影,而超声检查是在纵向和横向视图上对具有亮度和彩色多普勒模式的序列刻度数字进行的。鲤鱼的数字射线照相显示了全身形态,包括头部的骨骼部分,胸鳍,背鳍,骨盆鳍,肛门鳍,尾部的椎骨似乎不透射线。还观察到内部器官,随着膀胱和心脏出现射线可透,而肠道,肝脏,睾丸,卵巢出现不透射线的现象.亮度模式下的超声检查显示消化器官,生殖器官,和肌肉厚度。此外,彩色多普勒模式显示心脏心室内的血流。
    Medical imaging techniques such as digital radiography and ultrasonography are non-invasive and provide precise results for examining internal organs and structures within fish. Their effectiveness can be further enhanced by using body parts like scales as markers for the organs beneath them. This study utilized the number of scales as landmarks in digital radiography and ultrasonography to non-invasively evaluate the muscles, bones, and images of internal and reproductive organs of common carp (Cyprinus carpio). Digital radiography was performed in the dorsoventral and lateral views of the fish, whereas ultrasonography was conducted in longitudinal and transverse views on sequence scale numbers with brightness and colour Doppler-modes. Digital radiography of the common carp revealed the whole-body morphology, including the bony parts from the head, pectoral fins, dorsal fins, pelvic fins, anal fins, and vertebrae to the tail that appeared radiopaque. Internal organs were also observed, with the swim bladder and heart appeared radiolucent, while the intestines, liver, testes, and ovaries appeared radiopaque. Ultrasonography in brightness mode displayed the digestive organs, reproductive organs, and muscle thickness. Additionally, colour Doppler mode demonstrated blood flow within the heart\'s ventricle.
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  • 文章类型: Journal Article
    背景:无论是TYRP1介导的高度保守的遗传网络,其皮肤颜色朝向最佳防御的基础,还是其突变的病理趋势都没有得到很好的理解。Ou江颜色鲤鱼(Cyprinuscarpiovar。颜色)作为模型生物,提供对遗传学有价值的见解,着色,水产养殖实践,和环境健康。这里,我们采用保守分类方法,考虑不同颜色表型,对TYRP1突变体和野生鱼类进行了皮肤转录组比较分析.
    结果:我们的结果表明,一种不寻常的颜色表型可能被TYRP1突变致敏,这是由于对皮肤中COMT介导的儿茶酚胺神经递质引起的与抗炎自身免疫系统相关的几个基因上调的结果。特别是,儿茶酚胺衍生的红色/棕色,红色与蓝色膜攻击复合体,和棕色/灰色还原的真黑素预期在再生细胞中聚集。
    结论:是,因此,结论是含有儿茶酚胺的再生细胞,膜攻击复合体,和真黑素一起可能有助于TYRP1突变体中异常(咖啡样)颜色表型的形成。
    BACKGROUND: Neither a TYRP1-mediated highly conserved genetic network underlying skin color towards optimum defense nor the pathological tendency of its mutation is well understood. The Oujiang Color Common Carp (Cyprinus carpio var. color) as a model organism, offering valuable insights into genetics, coloration, aquaculture practices, and environmental health. Here, we performed a comparative skin transcriptome analysis on TYRP1 mutant and wild fishes by applying a conservative categorical approach considering different color phenotypes.
    RESULTS: Our results reveal that an unusual color phenotype may be sensitized with TYRP1 mutation as a result of upregulating several genes related to an anti-inflammatory autoimmune system in response to the COMT-mediated catecholamine neurotransmitters in the skin. Particularly, catecholamines-derived red/brown, red with blue colored membrane attack complex, and brown/grey colored reduced eumelanin are expected to be aggregated in the regenerated cells.
    CONCLUSIONS: It is, thus, concluded that the regenerated cells with catecholamines, membrane attack complex, and eumelanin altogether may contribute to the formation of the unusual (coffee-like) color phenotype in TYRP1 mutant.
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  • 文章类型: Journal Article
    这项研究考察了混养鱼(Labeorohita,鲤鱼鱼,和CatlaCatla),水,坦达水坝的沉积物,Kohat,巴基斯坦,旨在了解环境和健康风险。鱼的样本,水,从3个养鱼场收集沉积物,使用火焰原子吸收分光光度计(AAS)测量重金属浓度。结果表明,与其他鱼类相比,Catla表现出明显更高的Zn水平(p<0.05)。相反,C.carpio显示出显著较高(p<0.05)的铅浓度,Cd,Cr,Mn,Cu,As,和镍比其他物种。C.carpio中的重金属层次结构为Zn>Cu>Pb>Cr>Cd>Mn>As>Ni。虽然罗希塔乳杆菌和卡特拉C.中的重金属含量通常在参考范围内,锌有例外,Pb,还有Cd。相反,在C.Carpio,除Cu和Ni外,所有金属均超出参考范围。主成分分析(PCA)表明水与沉积物之间存在密切的关系。此外,聚类分析表明,C.catla与L.rohita和C.carpio形成了一个不同的簇,暗示对环境的不同反应。尽管地质累积指数(Igeo)和污染因子(CF)提出了担忧,特别是对于Cd,表现出高CF。此外,所有三种鱼类的危害指数(HI)值均低于1,表明健康风险较低。然而,Cd的Igeo和CF值升高表明来自人为来源的严重污染。这项研究强调了监测水中重金属对环境保护和人类健康保护的重要性。未来的研究工作应优先考虑污染控制措施,以确保生态系统和公共卫生安全。
    This study examines the levels of heavy metals in polyculture fish (Labeo rohita, Cyprinus carpio, and Catla catla), water, and sediment in Tanda Dam, Kohat, Pakistan, aiming to understand environmental and health risks. Samples of fish, water, and sediment were collected from 3 fish farms, and heavy metal concentrations were measured using a Flame Atomic Absorption Spectrophotometer (AAS). Results reveal that C. catla exhibited significantly higher (p < 0.05) levels of Zn than other fish species. Conversely, C. carpio showed significantly higher (p < 0.05) concentrations of Pb, Cd, Cr, Mn, Cu, As, and Ni than other species. The heavy metal hierarchy in C. carpio was found to be Zn > Cu > Pb > Cr > Cd > Mn > As > Ni. While heavy metal levels in L. rohita and C. catla generally fell within reference ranges, exceptions were noted for Zn, Pb, and Cd. Conversely, in C. carpio, all metals exceeded reference ranges except for Cu and Ni. Principal Component Analysis (PCA) indicated a close relationship between water and sediment. Additionally, cluster analysis suggested that C. catla formed a distinct cluster from L. rohita and C. carpio, implying different responses to the environment. Despite concerns raised by the Geoaccumulation Index (Igeo) and Contamination Factor (CF), particularly for Cd, which exhibited a high CF. Furthermore, Hazard Index (HI) values for all three fish species were below 1, suggesting low health risks. However, elevated Igeo and CF values for Cd suggest significant pollution originating from anthropogenic sources. This study underscores the importance of monitoring heavy metals in water for both environmental preservation and human health protection. Future research efforts should prioritize pollution control measures to ensure ecosystem and public health safety.
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  • 文章类型: Journal Article
    红细胞(RBC),也被称为红细胞,在免疫系统中的作用被低估了.在哺乳动物中,红细胞经历成熟,涉及细胞核的丧失,导致有限的转录和蛋白质合成能力。然而,非哺乳动物红细胞的成核性质正在挑战这种对红细胞的常规理解。值得注意的是,在骨鱼中,研究表明,红细胞不仅容易受到病原体的攻击,而且表达免疫受体和效应分子。然而,考虑到红细胞的丰富及其与每个生理系统的相互作用,我们假设他们作为哨兵进行监视,快速反应者,和信使。
    我们对暴露于嗜水气单胞菌的鲤鱼红细胞进行了一系列体外实验,以及在体内实验室感染使用不同浓度的细菌。
    qPCR显示红细胞表达几种炎性细胞因子的基因。使用鲤科动物特异性抗体,我们证实红细胞分泌肿瘤坏死因子α(TNFα)和干扰素γ(IFNγ)。与这些间接免疫机制相反,我们观察到红细胞产生活性氧,通过透射电子和共聚焦显微镜,红细胞可以吞噬颗粒。最后,红细胞表达和上调几种推定的toll样受体,包括tlr4和tlr9,以响应体内嗜水菌感染。
    总的来说,模式识别受体的红细胞库,它们分泌效应分子,它们的快速反应使它们具有免疫前哨,能够快速检测并发出外来病原体的信号。通过研究细菌和红细胞之间的相互作用,我们提供了新的见解,后者可能有助于整体先天和适应性免疫反应的硬骨鱼。
    UNASSIGNED: Red blood cells (RBCs), also known as erythrocytes, are underestimated in their role in the immune system. In mammals, erythrocytes undergo maturation that involves the loss of nuclei, resulting in limited transcription and protein synthesis capabilities. However, the nucleated nature of non-mammalian RBCs is challenging this conventional understanding of RBCs. Notably, in bony fishes, research indicates that RBCs are not only susceptible to pathogen attacks but express immune receptors and effector molecules. However, given the abundance of RBCs and their interaction with every physiological system, we postulate that they act in surveillance as sentinels, rapid responders, and messengers.
    UNASSIGNED: We performed a series of in vitro experiments with Cyprinus carpio RBCs exposed to Aeromonas hydrophila, as well as in vivo laboratory infections using different concentrations of bacteria.
    UNASSIGNED: qPCR revealed that RBCs express genes of several inflammatory cytokines. Using cyprinid-specific antibodies, we confirmed that RBCs secreted tumor necrosis factor alpha (TNFα) and interferon gamma (IFNγ). In contrast to these indirect immune mechanisms, we observed that RBCs produce reactive oxygen species and, through transmission electron and confocal microscopy, that RBCs can engulf particles. Finally, RBCs expressed and upregulated several putative toll-like receptors, including tlr4 and tlr9, in response to A. hydrophila infection in vivo.
    UNASSIGNED: Overall, the RBC repertoire of pattern recognition receptors, their secretion of effector molecules, and their swift response make them immune sentinels capable of rapidly detecting and signaling the presence of foreign pathogens. By studying the interaction between a bacterium and erythrocytes, we provide novel insights into how the latter may contribute to overall innate and adaptive immune responses of teleost fishes.
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  • 文章类型: Journal Article
    缺铁在全世界都很普遍,补充充足的铁或提高铁的生物利用度是解决缺铁问题的根本策略。在这里,我们探索了一种新的铁补充剂,以鲤鱼鱼鳞胶原蛋白肽(SCSCP)和FeCl2·4H2O为原料制备了鲤鱼鱼鳞铁螯合物(SCSCP-Fe),研究了外界环境和模拟胃肠消化环境对SCSCP-Fe稳定性的影响以及肽铁螯合物在消化过程中的结构变化。体外促进铁吸收的结果表明,SCSCP-Fe的铁生物有效性高于FeSO4。通过分子动力学和LC-MS/MS技术从SCSCP序列中筛选并合成了两种潜在的高铁螯合肽DTSGGYDEY(DY)和LQGSNEIEIR(LR)。FTIR结果表明,DY和LR对Fe2+的结合位点为羧基,氨基,和肽上酰胺基团上的氮原子。ITC结果表明,DY和LR与Fe2+的螯合反应主要以静电相互作用为主。分别以1:2和1:1的化学计量比形成螯合物。DY和LR均具有一定的促进铁吸收的能力。DY-Fe螯合物的转运可能是三个途径的组合:PepT1载体途径,细胞旁路,和内吞作用,而LR-Fe螯合物以二价金属离子转运蛋白为主。本研究有望为鲤鱼鳞片的高值化利用和新型铁补充剂的开发提供理论参考和技术支持。
    Iron deficiency is widespread throughout the world, supplementing sufficient iron or improving the bioavailability of iron is the fundamental strategy to solve the problem of iron scarcity. Herein, we explored a new form of iron supplement, iron chelates of silver carp scales (SCSCP-Fe) were prepared from collagen peptide of silver carp scales (SCSCP) and FeCl2·4H2O, the effects of external environment and simulated gastrointestinal digestive environment on the stability of SCSCP-Fe and the structural changes of peptide iron chelates during digestion were investigated. The results of in vitro iron absorption promotion showed that the iron bioavailability of SCSCP-Fe was higher than that of FeSO4. Two potential high iron chelating peptides DTSGGYDEY (DY) and LQGSNEIEIR (LR) were screened and synthesized from the SCSCP sequence by molecular dynamics and LC-MS/MS techniques. The FTIR results displayed that the binding sites of DY and LR for Fe2+ were the carboxyl group, the amino group, and the nitrogen atom on the amide group on the peptide. ITC results indicated that the chelation reactions of DY and LR with Fe2+ were mainly dominated by electrostatic interactions, forming chelates in stoichiometric ratios of 1:2 and 1:1, respectively. Both DY and LR had a certain ability to promote iron absorption. The transport of DY-Fe chelate may be a combination of the three pathways: PepT1 vector pathway, cell bypass, and endocytosis, while LR-Fe chelate was dominated by bivalent metal ion transporters. This study is expected to provide theoretical reference and technical support for the high-value utilization of silver carp scales and the development of novel iron supplements.
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  • 文章类型: Journal Article
    缺氧已成为限制水产养殖发展的最关键因素之一。鲤鱼(Carassiusauratus)是中国广泛食用的鱼类,对低氧环境具有优异的耐受性。然而,cru鱼缺氧适应和耐受的分子机制尚不清楚。与对照相比,T-SOD增加,CAT,GSH-Px,T-AOC,ALT,AST活性和MDA,TCHO,和TG含量,低氧胁迫后,TP和ATP含量降低。基于RNA-seq,2479个差异表达(DE)mRNA和60个DEmiRNA,和许多参与HIF信号通路的DEmRNA(HIF-1α,epo,vegfa,andho),厌氧代谢(hk1/hk2,pfk,gapdh,pk,和ldh)和免疫应答(nlrp12,cxcr1,cxcr4,ccr9和cxcl12)在缺氧暴露后显著上调。综合分析发现,预测igfbp1、hsp70和hk2受novel_867、dre-miR-125c-3p/novel_173、dre-miR-181b-5p、和dre-miR-338-5p/dre-miR-17a-3p,分别,MAPK信号通路显著富集DEmiRNAs,FoxO信号通路,和糖酵解/糖异生。表达分析表明,vegfa的mRNA水平,epo,ho,hsp70,hsp90aa.1,igfbp1,ldh,hk1,pfk,pk,gapdh表现出显著的增长,而sdh和mdh在H3h下调,H12h,H24h组与对照组比较。此外,研究发现,hk2是dre-miR-17a-3p的靶标,过表达dre-miR-17a-3p显著降低了hk2的表达水平,而在dre-miR-17a-3p沉默后获得相反的结果。这些结果有助于我们了解cru鱼耐缺氧的分子机制。
    Hypoxia has become one of the most critical factors limiting the development of aquaculture. Crucian carp (Carassius auratus) is widely consumed fish in China, with excellent tolerance to hypoxic environment. However, the molecular mechanisms underlying hypoxia adaptation and tolerance in crucian carp remain unclear. Compared with the control, increased T-SOD, CAT, GSH-Px, T-AOC, ALT, and AST activities and MDA, TCHO, and TG contents, and decreased TP and ATP contents were observed after hypoxia stress. Based on RNA-seq, 2479 differentially expressed (DE) mRNAs and 60 DE miRNAs were identified, and numerous DE mRNAs involved in HIF signaling pathway (hif-1α, epo, vegfa, and ho), anaerobic metabolism (hk1/hk2, pfk, gapdh, pk, and ldh) and immune response (nlrp12, cxcr1, cxcr4, ccr9, and cxcl12) were significantly upregulated after hypoxia exposure. Integrated analysis found that ho, igfbp1, hsp70, and hk2 were predicted to be regulated by novel_867, dre-miR-125c-3p/novel_173, dre-miR-181b-5p, and dre-miR-338-5p/dre-miR-17a-3p, respectively, and targets of DE miRNAs were significantly enriched in MAPK signaling pathway, FoxO signaling pathway, and glycolysis/gluconeogenesis. Expression analysis showed that the mRNA levels of vegfa, epo, ho, hsp70, hsp90aa.1, igfbp1, ldh, hk1, pfk, pk, and gapdh exhibited a remarkable increase, whereas sdh and mdh were downregulated in the H3h, H12h, and H24h groups compared with the control. Furthermore, research found that hk2 is a target of dre-miR-17a-3p, overexpression of dre-miR-17a-3p significantly decreased the expression level of hk2, while the opposite results were obtained after dre-miR-17a-3p silencing. These results contribute to our understanding of the molecular mechanisms of hypoxia tolerance in crucian carp.
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  • 文章类型: Journal Article
    鱼-病毒相互作用的模式和结果受许多非生物因素的影响,其中水温在变热鱼类中尤为重要。稀有的min鱼Gobiocyprisrarus是一种高温小鲤鱼,对II型草鱼呼肠孤病毒(GCRV)的感染敏感。HSP70是热休克反应的保守和关键参与者,先前在体外GCRV感染期间被鉴定为诱导的前病毒因子。这里,对稀有的min鱼进行了热休克处理(HST),在32°C下处理1小时,然后恢复到24°C的正常温度,随后用剂量为1×LD50的GCRV-II攻击。通过计算死鱼和存活鱼的病毒相关死亡率和病毒载量来评估HST对体内GCRV毒力的影响。结果表明,HST提高了感染GCRV的稀有min鱼的死亡率;在p.i.6、8d时,HST处理的鱼的组织样本中的病毒载量显着高于对照组样本中的病毒载量。反映了由于HST而导致的更快的感染过程。进一步采用定量基因表达分析来显示HST组的肠和肝组织中Hsp70的表达水平在HST后比肌肉组织下降得更快。HSTW/OGCRV攻击上调促炎细胞因子,如MyD88和NF-κB,这与组织病理学分析中观察到的炎症一致。这项研究揭示了鱼类非生物和生物胁迫反应之间相互作用的复杂性,这表明HST,非生物胁迫,可以增强GCRV在Gobiocyprus中的毒力,涉及调节宿主热休克的基因表达,以及促炎反应。
    The mode and outcome of fish-virus interactions are influenced by many abiotic factors, among which water temperature is especially important in poikilothermic fish. Rare minnow Gobiocypris rarus is a eurythermal small cyprinid fish that is sensitive to infection with genotype II grass carp reovirus (GCRV). HSP70, a conservative and key player in heat shock response, is previously identified as an induced pro-viral factor during GCRV infection in vitro. Here, rare minnow was subjected to heat shock treatment (HST), 1 h treatment at 32 °C followed by reverting to a normal temperature of 24 °C, and subsequently challenged with GCRV-II at a dosage of 1 × LD50. The effect of HST on GCRV virulence in vivo was evaluated by calculating virus-associated mortality and viral load in both dead and survival fish. The results revealed that HST enhanced the mortality of rare minnow infected with GCRV; the fact that viral loads in the tissue samples of HST-treated fish were significantly higher than those in samples of the control group at 6, 8 d p.i. reflected a faster infection process due to HST. Quantitative gene expression analysis was further employed to show that the expression levels of Hsp70 in intestine and liver tissues from the HST group declined faster than muscle tissue after HST. HST W/O GCRV challenge upregulated proinflammatory cytokines such as MyD88 and Nf-κB, which was in consistence with the inflammation observed in histopathological analysis. This study shed light on the complexity of the interaction between fish abiotic and biotic stress response, which suggested that HST, an abiotic stress, could enhance the virulence of GCRV in Gobiocypris rarus that involved modulating the gene expression of host heat shock, as well as a pro-inflammatory response.
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  • 文章类型: Journal Article
    草鱼呼肠孤病毒(GCRV)和嗜水气单胞菌(Ah)是草鱼出血性疾病的病原体。本研究旨在探讨miRNA的分子机制和免疫应答,mRNA和草鱼呼肠孤病毒感染的草鱼肾细胞(CIK)中的蛋白质水平(GCRV,NV)和嗜水气单胞菌(细菌,NB)以深入了解其发病机理。在感染草鱼呼肠孤病毒(GCRV)的48小时内,99个差异表达的microRNA(DEM),2132个差异表达基因(DEGs),通过测序鉴定出627种差异表达蛋白(DEP);共92种DEM,3162DEG,在嗜水气单胞菌感染后48小时内鉴定出712个DEP。值得注意的是,NV组中的大多数DEGs主要参与细胞过程,而基于KEGG富集分析,NB组中的大部分DEGs与代谢途径相关。这项研究表明,由GCRV感染引起的草鱼出血的机制与由嗜水气单胞菌感染引起的机制不同。基于全面的转录组和蛋白质组分析,建立了重要的miRNA-mRNA-蛋白质调控网络。此外,随机选择14个DEGs和6个DEM用于通过RT-qPCR验证RNA/小RNA-seq数据。我们的研究不仅有助于了解GCRV和嗜水气单胞菌感染的草carpCIK细胞的发病机理,而且对其他水生动物出血性疾病也具有重要的参考价值。
    Grass Carp Reovirus (GCRV) and Aeromonas hydrophila (Ah) are the causative agents of haemorrhagic disease in grass carp. This study aimed to investigate the molecular mechanisms and immune responses at the miRNA, mRNA, and protein levels in grass carp kidney cells (CIK) infected by Grass Carp Reovirus (GCRV, NV) and Aeromonas hydrophilus (Bacteria, NB) to gain insight into their pathogenesis. Within 48 h of infection with Grass Carp Reovirus (GCRV), 99 differentially expressed microRNA (DEMs), 2132 differentially expressed genes (DEGs), and 627 differentially expressed proteins (DEPs) were identified by sequencing; a total of 92 DEMs, 3162 DEGs, and 712 DEPs were identified within 48 h of infection with Aeromonas hydrophila. It is worth noting that most of the DEGs in the NV group were primarily involved in cellular processes, while most of the DEGs in the NB group were associated with metabolic pathways based on KEGG enrichment analysis. This study revealed that the mechanism of a grass carp haemorrhage caused by GCRV infection differs from that caused by the Aeromonas hydrophila infection. An important miRNA-mRNA-protein regulatory network was established based on comprehensive transcriptome and proteome analysis. Furthermore, 14 DEGs and 6 DEMs were randomly selected for the verification of RNA/small RNA-seq data by RT-qPCR. Our study not only contributes to the understanding of the pathogenesis of grass carp CIK cells infected with GCRV and Aeromonas hydrophila, but also serves as a significant reference value for other aquatic animal haemorrhagic diseases.
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  • 文章类型: Journal Article
    鲤鱼(Carassiusauratus)在世界范围内分布广泛,已成为一种经济淡水鱼。大理努尔湖种群可耐受极端碱性环境,碱度超过50mmol/L(pH9.6),从而为在极端碱性环境中探索耐碱分子标记提供了一个特殊的模型。在这项研究中,我们基于由152个后代组成的基因分型测序(GBS),构建了具有16,224个SNP标记的高密度和高分辨率连锁图,并进行了耐碱性状的QTL研究。连锁图谱总长度为3918.893cM,平均距离为0.241cM。在LG27和LG45上检测到两个耐氨氮性状的QTL。在LG27上检测到尿素-N耐受性性状的QTL。有趣的是,将两个QTL定位在LG27上显示,定位的基因都位于CDC42的内含子中。GO功能注释和KEGG富集分析结果表明其生物学功能可能参与细胞周期,细胞衰老,MAPK,和Ras信号通路。这些发现表明,CDC42可能在处理极端碱性环境的过程中发挥重要作用。
    Crucian carp (Carassius auratus) is widely distributed in the world and has become an economically freshwater fish. The population in Lake Dali Nur can tolerate the extreme alkaline environment with alkalinity over 50 mmol/L (pH 9.6), thus providing a special model for exploring alkali-tolerant molecular markers in an extremely alkaline environment. In this study, we constructed a high-density and high-resolution linkage map with 16,224 SNP markers based on genotyping-by-sequencing (GBS) consisting of 152 progenies and conducted QTL studies for alkali-tolerant traits. The total length of the linkage map was 3918.893 cM, with an average distance of 0.241 cM. Two QTLs for the ammonia-N-tolerant trait were detected on LG27 and LG45. A QTL for the urea-N-tolerant trait was detected on LG27. Interestingly, mapping the two QTLs on LG27 revealed that the mapped genes were both located in the intron of CDC42. GO functional annotation and KEGG enrichment analysis results indicated that the biological functions might be involved in the cell cycle, cellular senescence, MAPK, and Ras signaling pathways. These findings suggest that CDC42 may play an important role in the process of dealing with extremely alkaline environments.
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