Carbapenemases

碳青霉烯酶
  • 文章类型: Journal Article
    耐碳青霉烯类肺炎克雷伯菌(CRKP)的出现因其显著的抗生素耐药性而引起国际关注。值得注意的是,与成人相比,儿童表现出不同的抗性机制,需要一种不同的抗生素选择方法。对CRKP的流行病学和耐药机制进行全面的分析对于建立临床抗感染策略和精确预防控制措施的坚实基础至关重要。
    这项研究涉及在中国一家三甲医院收集31个来自儿科和成人患者的非重复菌株,从2016年7月到2022年7月,测试抗性基因,抗菌敏感性,和同源性分析。
    婴儿(0-1岁)是最大的小儿CRKP组,61.3%的病例。新生儿重症监护病房(NICU)和儿科是受影响的主要科室。患有CRKP的成年人平均年龄为67岁,神经内科和急诊ICU患病率最高。药敏试验显示成人CRKP菌株对阿米卡星具有较高的耐药性,环丙沙星,复方新诺明,和氨曲南与儿科菌株相比。相反,儿科菌株对头孢他啶/阿维巴坦的耐药率较高。确定的主要抗性基因是儿童的blaNDM-5(58.1%)和成人的blaKPC-2(87.1%),两组中超过93%的超广谱β-内酰胺酶(ESBL)基因检测呈阳性。多位点序列分型(MLST)表明ST2735和ST11是儿童和成人的主要类型,分别。脉冲场凝胶电泳(PFGE)鉴定了两个年龄组的ST11blaKPC-2和ST15blaOXA-232的克隆传播模式。值得注意的是,这项研究报告了NICU中ST1114型CRKP共同产生blaNDM-5和blaOXA-181的首例。
    这项研究揭示了儿童和成人CRKP中不同的耐药机制和流行病学。确定的克隆传播模式强调需要改善感染控制以防止抗性菌株的传播。
    UNASSIGNED: The emergence of carbapenem-resistant Klebsiella pneumoniae (CRKP) has garnered international concern due to its significant antibiotic resistance. Notably, children exhibit distinct resistance mechanisms compared to adults, necessitating a differential approach to antibiotic selection. A thorough analysis of CRKP\'s epidemiology and drug resistance mechanisms is essential for establishing a robust foundation for clinical anti-infection strategies and precise prevention and control measures.
    UNASSIGNED: This study involved the collection of 31 non-repetitive strains from pediatric and adult patients at a tertiary hospital in China, spanning from July 2016 to July 2022, testing for resistance genes, antimicrobial susceptibility, and homology analysis.
    UNASSIGNED: Infants (0-1 year) were the largest pediatric CRKP group, with 61.3% of cases. The neonatal intensive care unit (NICU) and pediatrics were the main departments affected. Adults with CRKP had a mean age of 67 years, with the highest prevalence in neurology and emergency ICU. Antimicrobial susceptibility testing revealed that adult CRKP strains exhibited higher resistance to amikacin, ciprofloxacin, cotrimoxazole, and aztreonam compared to pediatric strains. Conversely, pediatric strains showed a higher rate of resistance to ceftazidime/avibactam. The predominant resistance genes identified were bla NDM-5 in children (58.1%) and bla KPC-2 in adults (87.1%), with over 93% of both groups testing positive for extended-spectrum beta-lactamase (ESBL) genes. Multilocus Sequence Typing (MLST) indicated ST2735 and ST11 as the predominant types in children and adults, respectively. Pulsed-field gel electrophoresis (PFGE) identified clonal transmission patterns of ST11 bla KPC-2 and ST15 bla OXA-232 across both age groups. Notably, this study reports the first instance of ST1114-type CRKP co-producing bla NDM-5 and bla OXA-181 in the NICU.
    UNASSIGNED: This study reveals distinct resistance mechanisms and epidemiology in CRKP from children and adults. The identified clonal transmission patterns emphasize the need for improved infection control to prevent the spread of resistant strains.
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  • 文章类型: Journal Article
    背景:产生碳青霉烯酶的肺炎克雷伯菌(CRKP)对抗菌治疗提出了重大挑战,尤其是对粘菌素的抗性复合时。这项研究的目的是探索对产生碳青霉烯酶并表现出对粘菌素抗性的临床肺炎克雷伯菌菌株的分子流行病学见解。从德黑兰的Milad医院获得了80种CRKP临床分离株,伊朗。确定了抗菌药物敏感性和粘菌素肉汤圆盘洗脱。进行PCR检测以检查耐药相关基因的流行情况,包括BlaKPC,blaIMP,BlaVIM,blaOXA-48、blaNDM和mcr-1至-10。分子分型(PFGE)用于评估其传播。
    结果:使用肉汤盘洗脱方法在27个分离株(33.7%)中观察到粘菌素抗性。在碳青霉烯酶基因阳性分离株中,最常见的基因是blaOXA-48,在36株(45%)中鉴定。3.7%的分离株检测到mcr-1基因,在研究的分离株中没有检测到其他mcr基因。
    结论:为了阻止耐药肺炎克雷伯菌的传播和防止mcr基因的进化,必须加强监视,严格遵守感染预防协议,并实施抗生素管理实践。
    BACKGROUND: Carbapenemase-producing Klebsiella pneumoniae (CRKP) presents a significant challenge to antimicrobial therapy, especially when compounded by resistance to colistin. The objective of this study was to explore molecular epidemiological insights into strains of clinical K. pneumoniae that produce carbapenemases and exhibit resistance to colistin. Eighty clinical isolates of CRKP were obtained from Milad Hospital in Tehran, Iran. Antimicrobial susceptibility and colistin broth disk elution were determined. PCR assays were conducted to examine the prevalence of resistance-associated genes, including blaKPC, blaIMP, blaVIM, blaOXA-48, blaNDM and mcr-1 to -10. Molecular typing (PFGE) was used to assess their spread.
    RESULTS: Colistin resistance was observed in 27 isolates (33.7%) using the Broth Disk Elution method. Among positive isolates for carbapenemase genes, the most frequent gene was blaOXA-48, identified in 36 strains (45%). The mcr-1 gene was detected in 3.7% of the obtained isolates, with none of the other of the other mcr genes detected in the studied isolates.
    CONCLUSIONS: To stop the spread of resistant K. pneumoniae and prevent the evolution of mcr genes, it is imperative to enhance surveillance, adhere rigorously to infection prevention protocols, and implement antibiotic stewardship practices.
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  • 文章类型: Journal Article
    新的β-内酰胺/β-内酰胺酶抑制剂(BIBLI)组合是市售的,并且它们已经用于治疗耐碳青霉烯的肺炎克雷伯菌(CRKP)感染。在使用这些药物时,必须连续监测易感性和抗性机制鉴定,以监测耐药性的演变。这项研究的目的是评估对头孢他啶/阿维巴坦的敏感率,亚胺培南/雷巴坦和美罗培南/伐巴坦在巴西一项随机临床试验筛选的血流感染患者中的CRKP分离株。采用梯度扩散条法测定美罗培南的最低抑菌浓度(MIC),头孢他啶/阿维巴坦,亚胺培南/雷巴坦和美罗培南/伐巴坦。通过多重qPCR检测碳青霉烯酶基因。对任何BLBLI显示抗性的产生KPC的分离株和对任何BLBLI显示易感性的产生NDM的分离株进一步进行全基因组测序。从总共69个CRKP分离物中,39对blaKPC呈阳性,19用于blaNDM,11用于blaKPC和blaNDM。产生KPC的分离株对所有BLBLI的敏感性均超过94%。对美罗培南/vaborbactam具有抗性的两个分离株在OmpK36蛋白和截短的ompK35基因上显示Gly和Asp重复。所有产生NDM的分离株,包括KPC和NDM联合生产商,显示头孢他啶/阿维巴坦的敏感率,亚胺培南/莱巴坦和美罗培南/伐巴坦为0%,9.1至21.1%和9.1至26.3%,分别。对BLBLI具有易感性的五个产生NDM的分离株也证明了孔蛋白的改变。这项研究表明,尽管发现了对BLBLI的高敏感性,KPC-2分离株还可以证明由于孔蛋白突变而产生的抗性。此外,NDM-1分离株可在体外表现出对BLBLI的易感性。
    Novel beta-lactams/beta-lactamase inhibitors (BIBLI) combinations are commercially available and they have been used for treating carbapenem-resistant Klebsiella pneumoniae (CRKP) infections. Continuous surveillance of susceptibility profile and resistance mechanisms identification are necessary to monitor the evolution of resistance as these agents are used. The purpose of this study was to evaluate susceptibility rates to ceftazidime/avibactam, imipenem/relebactam and meropenem/vaborbactam in CRKP isolates from patients with bloodstream infection screened for a randomized clinical trial in Brazil. Minimum inhibitory concentration (MIC) was determined by gradient diffusion strip method for meropenem, ceftazidime/avibactam, imipenem/relebactam and meropenem/vaborbactam. Carbapenemase genes were detected by multiplex qPCR. KPC-producing isolates showing resistance to any BLBLI and NDM-producing isolates showing susceptibility to any BLBLI were further submitted to whole genome sequencing. From a total of 69 CRKP isolates, 39 were positive for blaKPC, 19 for blaNDM and 11 for blaKPC and blaNDM. KPC-producing isolates demonstrated susceptibility rates above 94% for all BLBLI. Two isolates with resistance to meropenem/vaborbactam showed a Gly and Asp duplication at OmpK36 protein and truncated ompK35 genes. All NDM-producing isolates, including KPC and NDM coproducers, demonstrated susceptibility rates for ceftazidime/avibactam, imipenem/relebactam and meropenem/vaborbactam of 0%, 9.1 to 21.1% and 9.1 to 26.3%, respectively. Five NDM-producing isolates that presented susceptibility to BLBLI also demonstrated alterations in porins. This study demonstrated that, although high susceptibility rates to the BLBLI were found, KPC-2 isolates can also demonstrate resistance due to porin mutations. Additionally, NDM-1 isolates can demonstrate susceptibility in vitro to the BLBLI.
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  • 文章类型: Journal Article
    碳青霉烯酶,一类专门水解碳青霉烯类的酶,对全球公共卫生构成重大威胁。这些酶根据其活性位点分为不同的Ambler类,分类为A类,D,最常见的类型是IMI/NMC-A,KPC,VIM,IMP,和OXA-48,通常与致病性物种如鲍曼不动杆菌有关,肺炎克雷伯菌,还有铜绿假单胞菌.产生碳青霉烯酶的细菌的出现和传播由于它们感染人类和动物(伴侣和食物产生)的能力以及它们在环境储库中的存在而引起了大量关注。采用一个整体的健康方法,一致努力旨在制定综合战略,以减轻抗菌素耐药性传播的影响。这需要合作干预,强调世界卫生组织等全球组织的积极措施,疾病预防控制中心,以及粮食和农业组织。通过综合葡萄牙不断发展的碳青霉烯酶流行病学景观,并追踪从最初的孤立病例到当代报告的轨迹,这篇综述强调了驱动抗生素耐药性的关键因素,如抗菌药物的使用和医疗保健实践,并强调了持续保持警惕的必要性,跨学科合作,和创新的干预措施,以遏制抗生素耐药性病原体带来的不断升级的威胁。最后,它讨论了旨在解决碳青霉烯酶介导的抗生素耐药性的潜在替代方案和创新,包括新疗法,加强监视,和公众意识运动。
    Carbapenemases, a class of enzymes specialized in the hydrolysis of carbapenems, represent a significant threat to global public health. These enzymes are classified into different Ambler\'s classes based on their active sites, categorized into classes A, D, and B. Among the most prevalent types are IMI/NMC-A, KPC, VIM, IMP, and OXA-48, commonly associated with pathogenic species such as Acinetobacter baumannii, Klebsiella pneumoniae, and Pseudomonas aeruginosa. The emergence and dissemination of carbapenemase-producing bacteria have raised substantial concerns due to their ability to infect humans and animals (both companion and food-producing) and their presence in environmental reservoirs. Adopting a holistic One Health approach, concerted efforts have been directed toward devising comprehensive strategies to mitigate the impact of antimicrobial resistance dissemination. This entails collaborative interventions, highlighting proactive measures by global organizations like the World Health Organization, the Center for Disease Control and Prevention, and the Food and Agriculture Organization. By synthesizing the evolving landscape of carbapenemase epidemiology in Portugal and tracing the trajectory from initial isolated cases to contemporary reports, this review highlights key factors driving antibiotic resistance, such as antimicrobial use and healthcare practices, and underscores the imperative for sustained vigilance, interdisciplinary collaboration, and innovative interventions to curb the escalating threat posed by antibiotic-resistant pathogens. Finally, it discusses potential alternatives and innovations aimed at tackling carbapenemase-mediated antibiotic resistance, including new therapies, enhanced surveillance, and public awareness campaigns.
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  • 文章类型: Journal Article
    背景:这项研究旨在评估三个商业面板的性能,ERIC耐碳青霉烯类肠杆菌科试验(ERICCRE试验),NG测试CARBA5(NGCARBA5),和BDPhoenixCPO检测面板(CPO面板),用于检测耐碳青霉烯类肠杆菌(CRE)中主要类型的碳青霉烯酶。
    方法:我们收集了502株碳青霉烯类耐药肠杆菌(CRE),证明了对至少一种碳青霉烯抗生素(厄他培南,亚胺培南,美罗培南,或多尼培南)。通过多重PCR和测序方法鉴定了碳青霉烯酶基因及其特定类型。随后,ERICCRE测试,CPO面板,并对这些分离株进行了NGCARBA5测定,并将结果与多重PCR结果进行比较。
    结果:结果表明,ERICCRE测试的总体敏感性和特异性分别为98.1%和93.6%,分别,与NGCARBA5的99.1%和90.6%相当。然而,CPO小组在识别Ambler类方面的敏感度仅为56.2%,对A类表现出最差的敏感性。此外,虽然ERICCRE测试在鉴定具有多个碳青霉烯酶编码基因的多基因分离株方面优于NGCARBA5,CPO小组未能对这些分离株进行准确分类.
    结论:我们的发现支持将ERICCRE试验作为临床实验室检测碳青霉烯酶的方法之一。尽管如此,CPO小组必须进一步优化,以提高其确定碳青霉烯酶分类的准确性,并解决检测多基因分离株的局限性。
    BACKGROUND: This study aimed to assess the performance of three commercial panels, the ERIC Carbapenem-Resistant Enterobacteriaceae Test (ERIC CRE test), the NG-Test CARBA 5 (NG CARBA 5), and the BD Phoenix CPO Detect Panel (CPO panel), for the detection of main types of carbapenemases among carbapenem-resistant Enterobacterales (CRE).
    METHODS: We collected 502 isolates of carbapenem-resistant Enterobacterales (CRE) demonstrating intermediate or resistant profiles to at least one carbapenem antibiotic (ertapenem, imipenem, meropenem, or doripenem). Carbapenemase genes and their specific types were identified through multiplex PCR and sequencing methods. Subsequently, the ERIC CRE test, CPO panel, and NG CARBA 5 assay were conducted on these isolates, and the results were compared with those obtained from multiplex PCR.
    RESULTS: The results indicated that the ERIC CRE test exhibited an overall sensitivity and specificity of 98.1% and 93.6%, respectively, which were comparable to 99.1% and 90.6% for the NG CARBA 5. However, the CPO panel demonstrated a sensitivity of only 56.2% in identifying Ambler classes, exhibiting the poorest sensitivity for class A. Moreover, while the ERIC CRE test outperformed the NG CARBA 5 in identifying multi-gene isolates with multiple carbapenemase-encoding genes, the CPO panel failed to accurately classify these isolates.
    CONCLUSIONS: Our findings support the utilization of the ERIC CRE test as one of the methods for detecting carbapenemases in clinical laboratories. Nonetheless, further optimization is imperative for the CPO panel to enhance its accuracy in determining carbapenemase classification and address limitations in detecting multi-gene isolates.
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  • 文章类型: Journal Article
    美罗培南-vaborbactam是治疗产生KPC的肺炎克雷伯菌(KPC-Kp)感染的最新且有希望的选择,包括那些对头孢他啶-阿维巴坦有抗药性的.
    我们对来自19家意大利医院的观察数据进行了回顾性分析,这些数据涉及使用美罗培南-伐巴坦治疗KPC-Kp感染至少≥24小时的患者的使用情况和结果。进行了粗和倾向加权多重Cox回归模型,以确定与30天死亡率独立相关的危险因素。
    该队列包括342名患有血流感染(n=172)和非细菌感染(n=170)的成年人,其中107例为下呼吸道感染,30人是复杂的尿路感染,33例感染涉及其他部位。大多数感染(62.3%)采用美罗培南-伐巴坦单药治疗,或与至少一种其他活性药物(通常是磷霉素,替加环素,或庆大霉素)(37.7%)。30天死亡率为31.6%(108/342)。在多元Cox回归模型中,30天死亡率与感染性休克独立相关,Charlson合并症指数≥3,透析,合并COVID-19,INCREMENT评分≥8。在感染发作后48小时内施用美罗培南-伐巴坦是死亡率的阴性预测因子。所有预测因子,除了在48小时内服用美罗培南-伐巴坦,当校正接受联合治疗的倾向评分后重复多重Cox回归模型时,该模型仍然具有显著性.
    尽管有回顾性研究的局限性,此多中心队列数据为美罗培南-伐巴坦治疗严重KPC-Kp感染的疗效提供了更多证据,即使用作单一疗法。
    UNASSIGNED: Meropenem-vaborbactam is a recent and promising option for the treatment of KPC-producing Klebsiella pneumoniae (KPC-Kp) infections, including those resistant to ceftazidime-avibactam.
    UNASSIGNED: We conducted a retrospective analysis of observational data from 19 Italian hospitals on use and outcomes of patients treated with meropenem-vaborbactam for at least ≥24 hours for KPC-Kp infections. Crude and propensity-weighted multiple Cox regression models were performed to ascertain risk factors independently associated with 30-day mortality.
    UNASSIGNED: The cohort included 342 adults with bloodstream infections (n = 172) and nonbacteremic infections (n = 170), of which 107 were lower respiratory tract infections, 30 were complicated urinary tract infections, and 33 were infections involving other sites. Most infections (62.3%) were managed with meropenem-vaborbactam monotherapy, or in combination with at least 1 other active drug (usually fosfomycin, tigecycline, or gentamicin) (37.7%). The 30-day mortality rate was 31.6% (108/342). In multiple Cox regression model, 30-day mortality was independently associated with septic shock at infection onset, Charlson comorbidity index ≥ 3, dialysis, concomitant COVID-19, and INCREMENT score ≥ 8. Administration of meropenem-vaborbactam within 48 hours from infection onset was a negative predictor of mortality. All predictors, except administration of meropenem-vaborbactam within 48 hours, remained significant when the multiple Cox regression model was repeated after adjustment for the propensity score for receipt of combination therapy.
    UNASSIGNED: Despite the limits of a retrospective study, the data derived from this multicenter cohort provide additional evidence on the efficacy of meropenem-vaborbactam in treating severe KPC-Kp infections, even when used as monotherapy.
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  • 文章类型: Journal Article
    β-内酰胺酶是使β-内酰胺抗生素失活的细菌酶,因此,是革兰氏阴性细菌中抗生素耐药性的最普遍原因。产生碳青霉烯酶的细菌菌株的不断增加的产量和全球传播目前是全球健康关注的问题。这些酶催化碳青霉烯类的水解,碳青霉烯类是具有最广泛活性的β-内酰胺抗生素,通常被认为是万不得已的药物。耐碳青霉烯类病原菌如铜绿假单胞菌,鲍曼不动杆菌和碳青霉烯酶或产超广谱β-内酰胺酶(ESBL)的肠杆菌,这在临床环境中很常见,令人担忧,因为,在某些情况下,没有可用的治疗方法。这些包括所有金属-β-内酰胺酶(VIM,IMP,NDM,SMP,和L1),和A类丝氨酸-碳青霉烯酶(KPC,中小企业,IMI,和GES),以及D类(OXA-23、OXA-24/40、OXA-48和OXA-58)。因此,早期诊断携带碳青霉烯酶的细菌菌株是临床微生物学的一项关键任务,以追踪抗生素细菌的耐药性并改善全球感染性疾病的管理。本文总结了有关开发显色和荧光化学传感器的最新研究工作,这些传感器用于特异性和灵敏地检测和定量多药耐药病原体中的β-内酰胺酶的产生。讨论了规避表型和分子方法主要局限性的研究。最近报道的显色和荧光头孢菌素和碳青霉烯类的β-内酰胺酶底物将作为目前可用的硝基红霉素和相关化合物的替代选择进行审查,一种基于头孢菌素的显色试剂,广泛用于临床微生物学实验室。这些新型化学传感器的范围,以及合成它们的合成方法,也进行了总结。
    β-Lactamases are bacterial enzymes that inactivate β-lactam antibiotics and, as such, are the most prevalent cause of antibiotic resistance in Gram-negative bacteria. The ever-increasing production and worldwide dissemination of bacterial strains producing carbapenemases is currently a global health concern. These enzymes catalyze the hydrolysis of carbapenems - the β-lactam antibiotics with the broadest spectrum of activity that are often considered as drugs of last resort. The incidence of carbapenem-resistant pathogens such as Pseudomonas aeruginosa, Acinetobacter baumannii and carbapenemase or extended spectrum beta-lactamase (ESBL)-producing Enterobacterales, which are frequent in clinical settings, is worrisome since, in some cases, no therapies are available. These include all metallo-β-lactamases (VIM, IMP, NDM, SMP, and L1), and serine-carbapenemases of classes A (KPC, SME, IMI, and GES), and of classes D (OXA-23, OXA-24/40, OXA-48 and OXA-58). Consequently, the early diagnosis of bacterial strains harboring carbapenemases is a pivotal task in clinical microbiology in order to track antibiotic bacterial resistance and to improve the worldwide management of infectious diseases. Recent research efforts on the development of chromogenic and fluorescent chemical sensors for the specific and sensitive detection and quantification of β-lactamase production in multidrug-resistant pathogens are summarized herein. Studies to circumvent the main limitations of the phenotypic and molecular methods are discussed. Recently reported chromogenic and fluorogenic cephalosporin- and carbapenem-based β-lactamase substrates will be reviewed as alternative options to the currently available nitrocefin and related compounds, a chromogenic cephalosporin-based reagent widely used in clinical microbiology laboratories. The scope of these new chemical sensors, along with the synthetic approaches to synthesize them, is also summarized.
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  • 文章类型: Journal Article
    背景:耐碳青霉烯类铜绿假单胞菌(CRPA)是对公众健康的严重威胁。全球范围内,产生碳青霉烯酶的CRPA分离株主要属于“高风险”克隆;然而,在智利传播的CRPA分离株的分子流行病学很少,这种病原体是呼吸机相关性肺炎的主要病原体。
    目的:表征2016-2022年在智利收集的ST654CRPA分离株的系统基因组学和分子特征。
    方法:对智利不同医院2005-2022年临床标本中收集的89株CRPA分离株进行分析。对CRPAST654分离株进行了抗生素敏感性试验和碳青霉烯酶生产。此外,对他们进行了全基因组测序(WGS),从中进行了计算机模拟分析.
    结果:34株(38.2%)属于ST654“高风险”克隆,是收藏中最主要的血统。这些分离株中的大多数属于一个子分支,包括KPC生产者,这些生产者也聚集了来自阿根廷和美国的菌株,而很少有VIM和NDM共同生产者聚集在两个不同的较小的子分支中。分离株表现出广泛的耐药组,包括介导对几种其他临床相关药物的抗性的基因。此外,所有34个ST654个分离株均为ExoS作为毒力因子,并与O4血清型相关。
    结论:我们的报告代表了迄今为止对CRPA“高风险”克隆ST654的最全面的系统基因组学研究。我们的分析表明,这个谱系在智利正在经历一条不同的进化路径,由于大多数分离株是KPC生产者,并且是O4血清型,与以前的描述不同,这强调了对这种病原体进行分子监测的相关性。
    BACKGROUND: Carbapenem-resistant Pseudomonas aeruginosa (CRPA) is a serious threat to public health. Globally, carbapenemases-producing CRPA isolates mainly belong to \'high-risk\' clones; however, the molecular epidemiology of CRPA isolates circulating in Chile are scarce, where this pathogen is the main aetiological agent of ventilator-associated pneumonia.
    OBJECTIVE: To characterize the phylogenomics and molecular features of ST654 CRPA isolates collected in Chile between 2016 - 2022.
    METHODS: 89 CRPA isolates collected in different Chilean hospitals from clinical specimens between 2005 and 2022 were analyzed. Antibiotic susceptibility tests and carbapenemases production were carried out on the CRPA ST654 isolates. Also, they were subjected to whole-genome sequencing (WGS) from which in silico analyses were performed.
    RESULTS: Thirty-four strains (38.2%) belonged to the ST654 \'high risk\' clone, being the most predominant lineage of the collection. Most of these isolates belonged to a sub-clade including KPC-producers that also clustered with strains from Argentina and the USA, whereas few VIM and NDM co-producers clustered in two different smaller sub-clades. The isolates exhibited a broad resistome encompassing genes mediating resistance to several other clinically relevant drugs. Additionally, all the 34 ST654 isolates were ExoS+ as a virulence factor and associated to the O4-serotype.
    CONCLUSIONS: Our report represents the most comprehensive phylogenomic study of CRPA \'high risk\' clone ST654 to date. Our analyses suggest that this lineage is undergoing a divergent evolutionary path in Chile, since most of the isolates were KPC-producers and were O4-serotype, differing from previous descriptions, which underline the relevance of performing molecular surveillance on this pathogen.
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  • 文章类型: Journal Article
    背景:鲍曼不动杆菌是全球范围内严重的健康问题,导致高死亡率和有限的药物治疗选择。碳青霉烯类耐药是鲍曼不动杆菌分离株中的一个重要问题。获得性碳青霉烯酶的合成,如恶草酰胺酶,IMP,NDM,VIM,和KPC酶,导致碳青霉烯类耐药。
    方法:总共106个非重复性,从巴林的四家主要医院收集鲍曼不动杆菌分离株,包括78例耐碳青霉烯鲍曼不动杆菌(CRAB),和28个碳青霉烯类敏感鲍曼不动杆菌(CSAB)分离株。本研究调查了三种表型测试:包括CARBANP,改良碳青霉烯灭活法(mCIM)/EDTA-CIM(eCIM),和改进的霍奇测试(MHT)。
    结果:CARBANP在50个测试的CRAB分离株(100%)中呈阳性,灵敏度是100%。MHT在73/106株(68.8%)中呈阳性,MHT的敏感性和特异性分别为77.6%和100%。此外,只有38/106(35.8%)株mCIM/eCIM阳性。mCIM的敏感性和特异性分别为40.4%和100%。
    结论:CARBANP是碳青霉烯酶生产表型检测的理想选择,其次是MHT。m/eCIM在CRAB中显示出较低的检出率。因此,结合测试会更准确。mCIM/eCIM可以容易地区分MBL和丝氨酸-碳青霉烯酶,因为这些酶在鲍曼不动杆菌中频繁地共同产生。在没有分子表征测试的医院设置中,CARBANP似乎是与MHT或mCIM/eCIM组合的替代测试。
    BACKGROUND: Acinetobacter baumannii is a serious health concern worldwide, causing high mortality rates and limited medical therapy options. Carbapenem resistance is a significant problem in Acinetobacter baumannii isolates. The synthesis of acquired carbapenemases, such as oxacillinases, IMP, NDM, VIM, and KPC enzymes, causes carbapenem resistance.
    METHODS: A total of 106 non-repetitive, Acinetobacter baumannii isolates were collected from four major hospitals in Bahrain including 78 carbapenem-resistant Acinetobacter baumannii (CRAB), and 28 carbapenem-susceptible Acinetobacter baumannii (CSAB) isolates. Three phenotypic tests were investigated in this study: including CARBA NP, modified carbapenem inactivation method (mCIM)/EDTA-CIM (eCIM), and modified Hodge test (MHT).
    RESULTS: CARBA NP was positive in 50 tested CRAB isolates (100%), and the sensitivity was 100%. The MHT was positive in 73/106 isolates (68.8%), while the sensitivity and specificity of the MHT were 77.6% and 100%. Moreover, only 38/106 (35.8%) isolates were positive for mCIM/eCIM. The sensitivity and specificity of mCIM were 40.4% and 100%.
    CONCLUSIONS: CARBA NP was ideal for phenotypic detection of carbapenemase production, followed by MHT. The m/eCIM demonstrated a lower detection rate in CRAB. Consequently, combining tests would be more accurate. The mCIM/eCIM can easily distinguish between MBLs and serine-carbapenemases due to the frequent co-production of these enzymes in A. baumannii. In hospital setups where molecular characterization tests are not available, CARBA NP seems to be an alternative test in combination with MHT or mCIM/eCIM.
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  • 文章类型: Journal Article
    产生碳青霉烯酶的大肠杆菌(CP-Eco)分离株,虽然不如其他CP-肠杆菌流行,有能力迅速传播抗生素抗性基因(ARGs)并导致严重的难以治疗的感染。这项研究的目的是在表型和基因型上表征从西班牙收集的CP-Eco分离株,以更好地了解其抗性机制和种群结构。
    包括2015年至2020年来自25个省和59家西班牙医院的90个代表性分离株。根据EUCAST指南确定抗生素敏感性并进行全基因组测序。抗生素耐药性和毒力相关基因,系统发育和种群结构,并分析了携带碳青霉烯酶基因的质粒。
    90个CP-Eco分离株是高度多克隆的,其中最普遍的是ST131,在14个(15.6%)的分离株中检测到。检测到的碳青霉烯酶基因为blaOXA-48(45.6%),BLAVIM-1(23.3%),BLANDM-1(7.8%),blaKPC-3(6.7%),和blaNDM-5(6.7%)。40例(44.4%)对6个或更多抗生素组耐药,活性最强的抗生素是粘菌素(98.9%),plazomicin(92.2%)和头孢地洛(92.2%)。七个耐头孢地洛的分离株中有四个属于ST167,六个带有blaNDM。5株对普拉佐米星耐药的分离株含有rmt。IncL质粒是最常见的(45.7%),其中有8个带有blaVIM-1。在八个分离株的IncF质粒中发现了blaOXA-48。金属-β-内酰胺酶在对六个或更多抗生素组具有抗性的分离株中更常见,它们的基因通常存在于相同的质粒/整合子上。ST131分离株与sat和pap毒力基因相关。这项研究强调了CP-Eco的遗传多功能性及其传播ARGs并引起社区和医院感染的潜力。
    UNASSIGNED: Carbapenemase-Producing Escherichia coli (CP-Eco) isolates, though less prevalent than other CP-Enterobacterales, have the capacity to rapidly disseminate antibiotic resistance genes (ARGs) and cause serious difficult-to-treat infections. The aim of this study is phenotypically and genotypically characterizing CP-Eco isolates collected from Spain to better understand their resistance mechanisms and population structure.
    UNASSIGNED: Ninety representative isolates received from 2015 to 2020 from 25 provinces and 59 hospitals Spanish hospitals were included. Antibiotic susceptibility was determined according to EUCAST guidelines and whole-genome sequencing was performed. Antibiotic resistance and virulence-associated genes, phylogeny and population structure, and carbapenemase genes-carrying plasmids were analyzed.
    UNASSIGNED: The 90 CP-Eco isolates were highly polyclonal, where the most prevalent was ST131, detected in 14 (15.6%) of the isolates. The carbapenemase genes detected were bla OXA-48 (45.6%), bla VIM-1 (23.3%), bla NDM-1 (7.8%), bla KPC-3 (6.7%), and bla NDM-5 (6.7%). Forty (44.4%) were resistant to 6 or more antibiotic groups and the most active antibiotics were colistin (98.9%), plazomicin (92.2%) and cefiderocol (92.2%). Four of the seven cefiderocol-resistant isolates belonged to ST167 and six harbored bla NDM. Five of the plazomicin-resistant isolates harbored rmt. IncL plasmids were the most frequent (45.7%) and eight of these harbored bla VIM-1. bla OXA-48 was found in IncF plasmids in eight isolates. Metallo-β-lactamases were more frequent in isolates with resistance to six or more antibiotic groups, with their genes often present on the same plasmid/integron. ST131 isolates were associated with sat and pap virulence genes. This study highlights the genetic versatility of CP-Eco and its potential to disseminate ARGs and cause community and nosocomial infections.
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