Carbapenemase-producing gram-negative bacteria

  • 文章类型: Journal Article
    本研究旨在调查碳青霉烯酶产生的流行病学特征和随时间的趋势(例如,KPC,NDM,VIM,IMP,和OXA-48)革兰氏阴性菌(CPGNB)。收集2019年4月至2023年2月郑州大学第一附属医院非重复多重耐药革兰阴性菌(MDRGNB)。使用Vitek2系统进行每种分离物的物种鉴定,并根据制造商的说明通过基质辅助激光解吸电离-飞行时间质谱进行确认。PCR检测到菌株中的碳青霉烯类耐药基因,通过碳青霉烯类失活试验验证后,将携带碳青霉烯类耐药基因的菌株归类为CPGNB菌株.在研究期间共收集了属于78个不同物种的5705个非重复MDRGNB分离株,其中1918年CPGNB进行了验证,呼吸道是标本的主要来源。流行病学统计显示,与其他部门相比,ICU来源的菌株占主导地位。肺炎克雷伯菌,大肠杆菌,鲍曼不动杆菌,铜绿假单胞菌是河南地区最显著的CPGNB,KPC和NDM是主要的碳青霉烯酶。河南省耐碳青霉烯类抗生素感染总体呈上升趋势,碳青霉烯酶基因的携带已变得越来越普遍和复杂。在大流行后时代,CPGNB的流行率越来越高,对公共安全构成了重大挑战。
    This study aimed to investigate the epidemiological characteristics and trends over time of carbapenemase-producing (e.g., KPC, NDM, VIM, IMP, and OXA-48) Gram-negative bacteria (CPGNB). Non-duplicated multi-drug resistant Gram-negative bacteria (MDRGNB) were collected from the First Affiliated Hospital of Zhengzhou University from April 2019 to February 2023. Species identification of each isolate was performed using the Vitek2 system and confirmed by matrix-assisted laser desorption ionization-time of flight mass spectrometry according to the manufacturer\'s instructions. PCR detected carbapenem resistance genes in the strains, strains carrying carbapenem resistance genes were categorized as CPGNB strains after validation by carbapenem inactivation assay. A total of 5705 non-repetitive MDRGNB isolates belonging to 78 different species were collected during the study period, of which 1918 CPGNB were validated, with the respiratory tract being the primary source of specimens. Epidemiologic statistics showed a significant predominance of ICU-sourced strains compared to other departments. Klebsiella pneumoniae, Escherichia coli, Acinetobacter baumannii, and Pseudomonas aeruginosa were the significant CPGNB in Henan, and KPC and NDM were the predominant carbapenemases. Carbapenem-resistant infections in Henan Province showed an overall increasing trend, and the carriage of carbapenemase genes by CPGNB has become increasingly prevalent and complicated. The growing prevalence of CPGNB in the post-pandemic era poses a significant challenge to public safety.
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  • 文章类型: Journal Article
    背景:抗菌素耐药性(AMR)是对人类健康的严重威胁。大肠杆菌和肺炎克雷伯菌是临床上与AMR相关的最重要的物种,并且是芬兰人体标本中检测到的最常见的碳青霉烯酶(CP)肠杆菌。废水监测已成为人口水平监测AMR的潜在方法,因为废水可以通过一个样本和最少的公认伦理问题提供更大人群的反映。在这项研究中,我们调查了废水监测检测CP大肠杆菌和肺炎克雷伯菌菌株的潜力,这些菌株与人体标本中检测到的菌株相似.
    方法:总之,在2021年至2022年期间,从芬兰的10个污水处理厂收集了89个未经处理的社区废水的复合样品。使用选择性培养基分离CP大肠杆菌和肺炎克雷伯菌,并使用MALDI-TOFMS进行鉴定。使用圆盘扩散试验和肉汤微量稀释法进行抗菌药物敏感性试验,并且使用全基因组测序对分离株的子集进行了表征。
    结果:在26个(29.2%)样品中检测到CP大肠杆菌,在25个(28.1%)样品中检测到肺炎克雷伯菌。在大肠杆菌中,最常见的序列类型(ST)是ST410(n=7/26,26.9%),而ST359(n=4/25,16.0%)在肺炎克雷伯菌中占主导地位。在大肠杆菌(ST410、ST1284、ST167和ST405)和肺炎克雷伯菌(ST512、ST101和ST307)中检测到总体上成功的ST。肺炎克雷伯菌碳青霉烯酶(KPC)是大肠杆菌(n=11/26,42.3%)和肺炎克雷伯菌(n=13/25,52.0%)中最常见的碳青霉烯酶,还有其他碳青霉烯酶,检测到例如blaNDM-5、blaOXA-48和blaOXA-181。我们在芬兰检测到具有相似ST和酶类型组合的分离株,例如具有blaKPC-2的大肠杆菌ST410和具有blaKPC-3的肺炎克雷伯菌ST512。
    结论:我们的研究强调了社区废水中存在CP大肠杆菌和肺炎克雷伯菌的临床相关菌株。结果表明,废水监测可以作为CP肠杆菌的监测工具。然而,应提高方法的特异性和灵敏度,和技术,像先进的测序方法,应该用来区分与公共卫生相关的数据,充分利用废水监测的潜力,并在公共卫生监测中实施数据。
    Antimicrobial resistance (AMR) is a critical threat to human health. Escherichia coli and Klebsiella pneumoniae are clinically the most important species associated with AMR and are the most common carbapenemase-producing (CP) Enterobacterales detected in human specimens in Finland. Wastewater surveillance has emerged as a potential approach for population-level surveillance of AMR, as wastewater could offer a reflection from a larger population with one sample and minimal recognized ethical issues. In this study, we investigated the potential of wastewater surveillance to detect CP E. coli and K. pneumoniae strains similar to those detected in human specimens.
    Altogether, 89 composite samples of untreated community wastewater were collected from 10 wastewater treatment plants across Finland in 2021-2022. CP E. coli and K. pneumoniae were isolated using selective culture media and identified using MALDI-TOF MS. Antimicrobial susceptibility testing was performed using disk diffusion test and broth microdilution method, and a subset of isolates was characterized using whole-genome sequencing.
    CP E. coli was detected in 26 (29.2%) and K. pneumoniae in 25 (28.1%) samples. Among E. coli, the most common sequence type (ST) was ST410 (n = 7/26, 26.9%), while ST359 (n = 4/25, 16.0%) predominated among K. pneumoniae. Globally successful STs were detected in both E. coli (ST410, ST1284, ST167, and ST405) and K. pneumoniae (ST512, ST101, and ST307). K. pneumoniae carbapenemases (KPC) were the most common carbapenemases in both E. coli (n = 11/26, 42.3%) and K. pneumoniae (n = 13/25, 52.0%), yet also other carbapenemases, such as blaNDM-5, blaOXA-48, and blaOXA-181, were detected. We detected isolates harboring similar ST and enzyme type combinations previously linked to clusters in Finland, such as E. coli ST410 with blaKPC-2 and K. pneumoniae ST512 with blaKPC-3.
    Our study highlights the presence of clinically relevant strains of CP E. coli and K. pneumoniae in community wastewater. The results indicate that wastewater surveillance could serve as a monitoring tool for CP Enterobacterales. However, the specificity and sensitivity of the methods should be improved, and technologies, like advanced sequencing methods, should be utilized to distinguish data with public health relevance, harness the full potential of wastewater surveillance, and implement the data in public health surveillance.
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  • 文章类型: Journal Article
    背景:这里,我们描述了一种检测患者环境中表面/fomites上产生碳青霉烯酶的革兰氏阴性菌(gn-Cp)的综合方法。我们检查了来自28个病房的环境样本,这些患者被直肠筛查证实被gn-Cp定植。
    方法:我们在24小时后取样,72小时和一周。对于采样,我们将患者环境分为四个部分,并从邻近和延伸的患者区域采集样本。为了从更大的表面获得代表性的细菌拭子,比如病人柜,我们用了Polywipes.分离细菌DNA。用特异性qPCR引物检测碳青霉烯酶。
    结果:通过这种基于文化和分子的方法,我们可以在日常临床实践中控制清洁和消毒的有效性。因此,我们可以追踪gn-Cp在病房内的传播。阳性检测的数量在30.5%(72小时后的平均值阳性结果)和35.2%(24小时和一周后)之间波动。
    结论:使用PolywipesTM检测患者环境中多药耐药菌的方法是可靠的,因此可以作为一种有效的,卫生和感染控制的新工具。
    BACKGROUND: Here, we describe an integrative method to detect carbapenemase-producing Gram-negative bacteria (gn-Cp) on surfaces/fomites in the patient environment. We examined environmental samples from 28 patient rooms occupied with patients who were proven to be colonised with gn-Cp by rectal screening.
    METHODS: We took samples after 24 h, 72 h and one week. For sampling, we divided the patient environment into four parts and took samples from near- and extended patient areas. To obtain a representative bacterial swab from a larger surface, such as the patient cabinet, we used Polywipes. Bacterial DNA was isolated. Carbapenemase was detected with specific qPCR primers.
    RESULTS: With this culture- and molecular-based approach, we could control the effectiveness of cleaning and disinfection in everyday clinical practice. Therefore, we could track the spread of gn-Cp within the patient room. The number of positive detections fluctuated between 30.5% (mean value positive results after 72 h) and 35.2% (after 24 h and one week).
    CONCLUSIONS: The method used to detect multidrug-resistant bacteria in the environment of patients by using PolywipesTM is reliable and can therefore be used as an effective, new tool in hygiene and infection control.
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  • 文章类型: Journal Article
    A rapid and accurate detection of carbapenemase-producing Gram-negative bacteria (CPGNB) has an immediate demand in the clinic. Here, we developed and validated a method for rapid detection of CPGNB using Blue-Carba combined with deep learning (designated as AI-Blue-Carba). The optimum bacterial suspension concentration and detection wavelength were determined using a Multimode Plate Reader and integrated with deep learning modeling. We examined 160 carbapenemase-producing and non-carbapenemase-producing bacteria using the Blue-Carba test and a series of time and optical density values were obtained to build and validate the machine models. Subsequently, a simplified model was re-evaluated by descending the dataset from 13 time points to 2 time points. The best suitable bacterial concentration was determined to be 1.5 optical density (OD) and the optimum detection wavelength for AI-Blue-Carba was set as 615 nm. Among the 2 models (LRM and LSTM), the LSTM model generated the higher ROC-AUC value. Moreover, the simplified LSTM model trained by short time points (0-15 min) did not impair the accuracy of LSTM model. Compared with the traditional Blue-Carba, the AI-Blue-Carba method has a sensitivity of 95.3% and a specificity of 95.7% at 15 min, which is a rapid and accurate method to detect CPGNB.
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  • 文章类型: Journal Article
    背景:2015年5月,英国公共卫生部推出了一种电子报告系统(ERS),用于加强对产生碳青霉烯酶的革兰氏阴性菌(CPGNB)的监测。
    目的:这项评估旨在评估摄取,提供的数据的及时性和完整性,并探索采用该系统的潜在障碍和促进者。
    方法:评估包括对监测数据的回顾性分析和对ERS用户的半结构化访谈。
    结果:在实施后的前12个月中,通过ERS进行碳青霉烯耐药性调查的生物体比例从35%增加到73%;英格兰各地区的摄取差异很大。在78%的提交的分离株中,增强数据字段的完整性较差。通过ERS报告验证性测试结果的平均天数为区域服务1天,国家参考实验室9天,另外进行表型测试以确认碳青霉烯酶的阴性。阻碍ERS公用事业的因素包括:缺乏指定的,用于系统维护的持续资源,技术支持和开发;不确定如何以及何时使用ERS和工作负载。不完整的数据无法更好地了解英国CPGNB的重要风险因素和传播途径。
    结论:ERS是英格兰唯一有可能收集有关CPGNB重要危险因素的情报的监测系统,以告知公共卫生措施以控制其传播。尽管ERS比其他监视系统捕获更多关于CPGNB的信息,增强数据的及时性和完整性需要进行重大改进,以实现预期的健康益处。
    BACKGROUND: An electronic reporting system (ERS) for the enhanced surveillance of carbapenemase-producing Gram-negative bacteria (CPGNB) was launched by Public Health England in May 2015.
    OBJECTIVE: This evaluation aimed to assess uptake, timeliness and completeness of data provided and explore potential barriers and facilitators to adopting the system.
    METHODS: The evaluation comprised a retrospective analysis of surveillance data and semi-structured interviews with ERS users.
    RESULTS: The proportion of organisms referred for investigation of carbapenem resistance via ERS increased over the first 12 months post-implementation from 35% to 73%; uptake varied widely across regions of England. Completeness of enhanced data fields was poor in 78% of submitted isolates. The median number of days to report confirmatory test results via ERS was 1 day for the regional service and nine days for the national reference laboratory, which additionally conducts phenotypic testing to confirm carbapenemase negativity. Hindrances to ERS utility included: a lack of designated, ongoing resource for system maintenance, technical support and development; uncertainty about how and when to use ERS and workload. Incomplete data prevented gaining a better understanding of important risk factors and transmission routes of CPGNB in England.
    CONCLUSIONS: The ERS is the only surveillance system in England with the potential to gather intelligence on important risk factors for CPGNB to inform public health measures to control their spread. Although the ERS captures more information on CPGNB than other surveillance systems, timeliness and completeness of the enhanced data require substantial improvements in order to deliver the desired health benefits.
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  • 文章类型: Journal Article
    We evaluated a rapid biochemical screening test β-CARBA™ for detection of Gram-negative carbapenemase producers. The sensitivity of the test after 30min incubation was 98.2%, but increased to 100% after 1h. β-CARBA™ proved reliable for carbapenemase screening in Acinetobacter spp. for which currently no commercial phenotypic assays are available.
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  • 文章类型: Journal Article
    We evaluated RAPIDEC® CARBA NP, Neo-Rapid CARB, chromID® CARBA SMART (CARB/OXA), Brilliance™ CRE/ESBL, ChromArt CRE and BBL™ CHROMagar™ CPE for the detection of carbapenemase-producing bacteria. The analytical sensitivity of RAPIDEC® CARBA NP was better than that of Neo-Rapid CARB. A combination of carbapenemase and ESBL screening plates could be advantageous.
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