Cancer genetics

癌症遗传学
  • 文章类型: Journal Article
    背景:髓系肿瘤,包括急性髓系白血病,传统上是研究较少的关于种系易感性的癌症类型之一。的确,有种系易感性的髓系肿瘤在诊断时通常表现出与散发性病例相似的临床和形态学特征,并且具有相似的年龄。然而,髓系肿瘤熟悉度的错误识别对携带者及其亲属的临床管理都有重要影响.
    目的:我们进行了家庭隔离研究,为了鉴定髓系肿瘤中新的癌症易感基因,并对新鉴定的变异进行分类。
    结果:我们使用大型定制基因面板(256个基因)进行了彻底的基因组分析,Myelo小组,针对癌症易感基因。特别是,我们评估了四个家族的种系和体细胞变异,每个人都有两个兄弟姐妹,发展为血液肿瘤:7例急性髓细胞性白血病和1例费城阳性慢性髓细胞性白血病。在每个家庭中,我们确定了至少一个新的潜在易感变异,还影响目前欧洲白血病网络AML管理指南中未包括的基因。此外,我们建议将两种种系变体重新分类为致病性:CEPBA中的可能致病性p.S21Tfs*139和DDX41中的VUSp.K392Afs*66。
    结论:我们认为对血液肿瘤的易感性仍被低估,尤其难以诊断。考虑到骨髓性肿瘤熟悉度的错误识别对携带者及其亲属的临床管理都有重要影响,我们的研究强调了修订的重要性,在这种临床背景下,应包括彻底重建家族史和深入的基因检测的临床实践。
    BACKGROUND: Myeloid neoplasms, including acute myeloid leukemia, have been traditionally among the less investigated cancer types concerning germline predisposition. Indeed, myeloid neoplasms with germline predisposition are challenging to identify because often display similar clinical and morphological characteristics of sporadic cases and have similar age at diagnosis. However, a misidentifications of familiarity in myeloid neoplasms have a critical impact on clinical management both for the carriers and their relatives.
    OBJECTIVE: We conducted a family segregation study, in order to identify novel cancer predisposing genes in myeloid neoplasms and classify novel identified variants.
    RESULTS: We performed a thorough genomic analysis using a large custom gene panel (256 genes), the Myelo-Panel, targeted on cancer predisposing genes. In particular, we assessed both germline and somatic variants in four families, each with two siblings, who developed hematological neoplasms: seven acute myeloid leukemia and one Philadelphia-positive chronic myeloid leukemia. In each family, we identified at least one novel potentially predisposing variant, affecting also genes not included in the current European LeukemiaNet guidelines for AML management. Moreover, we suggest reclassification of two germline variants as pathogenic: likely pathogenic p.S21Tfs*139 in CEPBA and VUS p.K392Afs*66 in DDX41.
    CONCLUSIONS: We believe that predisposition to hematological neoplasms is still underestimated and particularly difficult to diagnosed. Considering that misidentification of familiarity in myeloid neoplasms have a critical impact on the clinical management both for the carriers and their relatives, our study highlights the importance of revision, in this clinical context, of clinical practices that should include thorough reconstruction of family history and in-depth genetic testing.
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  • 文章类型: Journal Article
    背景:确定的个人和家族风险因素共同导致女性患乳腺癌或卵巢癌的风险。现有的临床服务提供高风险基因致病变异的基因检测,以调查这些风险,但有关常见基因组变异作用的最新信息,以多基因风险评分(PRS)的形式,提供了进一步个性化乳腺癌和卵巢癌风险评估的潜力。来自队列研究的数据支持综合风险评估的潜力,以改善有针对性的风险管理,但这种方法在临床实践中的经验是有限的。
    方法:多基因风险调整试验是一项澳大利亚多中心前瞻性随机对照试验,综合风险评估包括个人和家庭风险因素,包括乳腺和卵巢PRS与标准治疗。这项研究将招募女性,不受癌症的影响,在家族性癌症诊所进行预测测试,以确定已知乳腺癌(BC)或卵巢癌(OC)易感基因(BRCA1,BRCA2,PALB2,CHEK2,ATM,RAD51C,RAD51D)。基于阵列的基因分型将用于产生乳腺癌(313个SNP)和卵巢癌(36个SNP)PRS。已经为该试验开发了一套材料,包括用于患者同意和问卷调查的在线门户,和临床医生教育计划,以培训医疗保健提供者使用综合风险评估。长期跟进将评估风险和管理建议的差异,患者风险管理意图和依从性,患者报告的经验和结果,以及个性化风险评估对卫生服务的影响。
    背景:本研究已获得PeterMacCallum癌症中心人类研究伦理委员会和所有参与中心的批准。研究结果将通过同行评审的出版物和会议演示文稿传播,直接对参与者。
    背景:ACTRN12621000009819。
    BACKGROUND: Established personal and familial risk factors contribute collectively to a woman\'s risk of breast or ovarian cancer. Existing clinical services offer genetic testing for pathogenic variants in high-risk genes to investigate these risks but recent information on the role of common genomic variants, in the form of a Polygenic Risk Score (PRS), has provided the potential to further personalise breast and ovarian cancer risk assessment. Data from cohort studies support the potential of an integrated risk assessment to improve targeted risk management but experience of this approach in clinical practice is limited.
    METHODS: The polygenic risk modification trial is an Australian multicentre prospective randomised controlled trial of integrated risk assessment including personal and family risk factors with inclusion of breast and ovarian PRS vs standard care. The study will enrol women, unaffected by cancer, undergoing predictive testing at a familial cancer clinic for a pathogenic variant in a known breast cancer (BC) or ovarian cancer (OC) predisposition gene (BRCA1, BRCA2, PALB2, CHEK2, ATM, RAD51C, RAD51D). Array-based genotyping will be used to generate breast cancer (313 SNP) and ovarian cancer (36 SNP) PRS. A suite of materials has been developed for the trial including an online portal for patient consent and questionnaires, and a clinician education programme to train healthcare providers in the use of integrated risk assessment. Long-term follow-up will evaluate differences in the assessed risk and management advice, patient risk management intentions and adherence, patient-reported experience and outcomes, and the health service implications of personalised risk assessment.
    BACKGROUND: This study has been approved by the Human Research Ethics Committee of Peter MacCallum Cancer Centre and at all participating centres. Study findings will be disseminated via peer-reviewed publications and conference presentations, and directly to participants.
    BACKGROUND: ACTRN12621000009819.
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  • 文章类型: Editorial
    暂无摘要。
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  • 文章类型: Journal Article
    背景:与乳腺癌(BC)相关的高外显率基因的致病变异的管理,如BRCA1和BRCA2,是公认的。然而,中度外显率突变研究不足。我们旨在比较中度外显率BC相关基因突变患者的风险降低决策模式。没有先前的BC诊断。
    方法:年龄≥18岁、BRCA1/2、高外显率、我们从一个学术中心的数据库中回顾性鉴定了1996年至2023年间与BC相关的或中度外显突变,但没有同时或先前的BC诊断.组按突变类型分层:BRCA1/2突变(BRCA1,BRCA2),高外显率突变(HPM;CDH1,PALB2,PTEN,STK11,TP53),或中度外显率突变(MPM;ATM,BARD1,CHEK2,NF1,RAD51C,RAD51D)。比较人口统计学和临床结果。
    结果:共528例患者符合纳入标准,66%(n=350)有BRCA1/2突变,8%(n=44)有HPM,25%(n=134)患有MPM;中位随访时间为56.0个月。在我们的队列中,20.9%的BRCA突变患者,9.1%的HPM,7.5%的MPM患者选择接受降低风险的乳腺切除术(RRM)。在中等外显率队列中,选择接受RRM的患者在基因检测时更年轻(39.4vs.47.5年,p=0.03),并且BC的家庭成员数量较多(2vs.1,p=0.05)。
    结论:我们的研究结果为中度外显突变患者和进行降低风险手术患者的人口统计学特征和家族史提供了见解。
    BACKGROUND: Management of pathogenic variants in high penetrance genes related to breast cancer (BC), such as BRCA1 and BRCA2, are well established. However, moderate penetrance mutations are understudied. We aim to compare risk reduction decision-making patterns in patients with a moderate penetrance BC-related genetic mutations, without a prior BC diagnosis.
    METHODS: Female patients aged ≥ 18 years who tested positive for a BRCA1/2, high penetrance, or moderate penetrance mutation related to BC between 1996 and 2023 without a concurrent or prior BC diagnosis were retrospectively identified from a single academic center\'s database. Groups were stratified by mutation type: BRCA1/2 mutations (BRCA1, BRCA2), high penetrance mutations (HPM; CDH1, PALB2, PTEN, STK11, TP53), or moderate penetrance mutations (MPM; ATM, BARD1, CHEK2, NF1, RAD51C, RAD51D). Demographics and clinical outcomes were compared.
    RESULTS: A total of 528 patients met the inclusion criteria, with 66% (n = 350) having a BRCA1/2 mutation, 8% (n = 44) having HPM, and 25% (n = 134) having MPM; the median follow-up was 56.0 months. In our cohort, 20.9% of patients with BRCA mutations, 9.1% with HPM, and 7.5% with MPM chose to undergo risk-reducing mastectomies (RRM). Within the moderate penetrance cohort, patients who chose to undergo RRM were younger at the time of genetic testing (39.4 vs. 47.5 years, p = 0.03) and had a higher number of family members with BC (2 vs. 1, p = 0.05).
    CONCLUSIONS: Our findings provide insights into the demographic characteristics and family history of patients with moderate penetrance mutations and those who pursue risk-reducing surgery.
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  • 文章类型: Journal Article
    癌症治疗有丰富的历史,为当前和未来的癌症治疗提供了许多重要的经验。我们回顾过去,勾勒出这段历史,回顾癌症治疗的现状,通过浏览潜在的未来癌症疗法。
    There is a rich history of cancer treatments which provides a number of important lessons for present and future cancer therapies. We outline this history by looking in the past, reviewing the current landscape of cancer treatments, and by glancing at the potential future cancer therapies.
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  • 文章类型: Journal Article
    在过去的二十年里,嗜铬细胞瘤和副神经节瘤(PPGL)背后的遗传易感性研究激增,将它们列为最遗传性肿瘤之一。到目前为止,大规模测序结合仔细的患者选择已经确定了20多个易感基因,导致过度检测未知意义的变体(VUS),需要精确的分子标记来确定其致病作用。此外,一些PPGL患者仍未确诊,可能是由于已知基因的调节区的突变或未被发现的基因的突变。VUS的准确分类和新基因的鉴定需要明确的临床和分子标记,这些标记可以对大多数PPGL进行有效的遗传诊断。
    Over the past two decades, research into the genetic susceptibility behind pheochromocytoma and paraganglioma (PPGL) has surged, ranking them among the most heritable tumors. Massive sequencing combined with careful patient selection has so far identified more than twenty susceptibility genes, leading to an over-detection of variants of unknown significance (VUS) that require precise molecular markers to determine their pathogenic role. Moreover, some PPGL patients remain undiagnosed, possibly due to mutations in regulatory regions of already known genes or mutations in undiscovered genes. Accurate classification of VUS and identification of new genes require well-defined clinical and molecular markers that allow effective genetic diagnosis of most PPGLs.
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  • 文章类型: Journal Article
    目的:本研究的目的是评估可能导致成人颗粒细胞瘤(AGCT)发展风险的潜在种系致病变异的频率,因为这些患者缺乏种系检测指南。
    方法:这是一项回顾性的横断面研究,分析了2012年至2022年提交给FoundationMedicine的具有FOXL2p.C134W突变的AGCT的综合基因组分析(CGP)结果。通过根据变异等位基因频率(VAF)和ClinVar中的存在过滤单核苷酸变异和短插入缺失来鉴定具有潜在种系致病性变异的病例,以选择癌症易感基因。与健康人群相比,计算了AGCT风险的几率。
    结果:在分析之前,筛选了595例患者,其中包括516例体细胞FOXL2p.C134W突变。DNA修复相关基因(ATM,BRCA1,BRCA2,CHEK2,PALB2,PMS2,RAD51C,或RAD51D)在6.6%的FOXL2突变的AGCT中发现。在3.5%(18/516)的AGCT患者中发现了潜在的种系致病性CHEK2变异,该比率比基因组聚集数据库非癌症受试者高2.8倍(95%CI1.8-4.6,p<0.001)。创始人变体p.I157T(38.9%,7/18)和p.T367fs*15(c.1100delC;27.8%,5/18)是最常见的观察到的。CHEK2VAF表明该基因的野生型拷贝频繁丢失。
    结论:这些结果支持正在进行的基因组肿瘤分析和验证性种系检测,用于潜在的种系致病变异。有必要对该人群中种系变异的生物学进行进一步的前瞻性研究。
    OBJECTIVE: The objective of this study was to assess the frequency of potential germline pathogenic variants that may contribute to risk of development of adult granulosa cell tumors (AGCT) given the paucity of germline testing guidelines for these patients.
    METHODS: This was a retrospective cross-sectional study analyzing comprehensive genomic profiling (CGP) results of AGCT with the FOXL2 p.C134W mutation submitted to Foundation Medicine between 2012 and 2022. Cases with a potential germline pathogenic variant were identified by filtering single nucleotide variants and short indels by variant allele frequency (VAF) and presence in ClinVar for select cancer susceptibility genes. Odds ratios for AGCT risk were calculated compared to a healthy population.
    RESULTS: Prior to analysis, 595 patients were screened and 516 with a somatic FOXL2 p.C134W mutation were included. Potential germline pathogenic variants in a DNA repair-related gene (ATM, BRCA1, BRCA2, CHEK2, PALB2, PMS2, RAD51C, or RAD51D) were found in 6.6% of FOXL2-mutated AGCT. Potential germline pathogenic CHEK2 variants were found in 3.5% (18/516) of AGCT patients, a rate that was 2.8-fold higher than Genome Aggregation Database non-cancer subjects (95% CI 1.8-4.6, p < 0.001). The founder variants p.I157T (38.9%, 7/18) and p.T367fs*15 (c.1100delC; 27.8%, 5/18) were most commonly observed. CHEK2 VAF indicated frequent loss of the wildtype copy of the gene.
    CONCLUSIONS: These results support ongoing utilization of genomic tumor profiling and confirmatory germline testing for potential germline pathogenic variants. Further prospective investigation into the biology of germline variants in this population is warranted.
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  • 文章类型: Journal Article
    随着下一代测序(NGS)的应用越来越广泛,种系和罕见的遗传变异负责遗传性疾病,包括癌症易感性综合征(CPS),占儿童恶性肿瘤的10%,已经找到了。CPS是一组种系遗传疾病,已被确定为儿科癌症发展的危险因素。不包括一些“经典”CPS,由于NGS技术知识的不断发展,对于何时以及如何在癌症儿童中进行种系基因诊断研究尚无一致意见.已经提出了各种临床筛查工具来帮助识别风险更大的个体。使用不同的策略和不同的结果。我们在这里概述了各种CPS的主要临床和分子特征,并总结了有关儿科癌症患者CPS患病率的现有临床基因组学数据。此外,我们讨论了几个道德问题,挑战,局限性,成本效益,并将CPS的基因组新生儿筛查整合到医疗保健系统中。此外,我们评估了常用的决策支持工具在识别可能从遗传咨询和/或直接基因检测中获益的患者方面的有效性.这项调查强调了一种量身定制的系统方法,利用医疗新生儿筛查工具,如高风险新生儿的基因组测序,这可能是儿科癌症护理中一种实用且具有成本效益的策略。
    As next-generation sequencing (NGS) has become more widely used, germline and rare genetic variations responsible for inherited illnesses, including cancer predisposition syndromes (CPSs) that account for up to 10% of childhood malignancies, have been found. The CPSs are a group of germline genetic disorders that have been identified as risk factors for pediatric cancer development. Excluding a few \"classic\" CPSs, there is no agreement regarding when and how to conduct germline genetic diagnostic studies in children with cancer due to the constant evolution of knowledge in NGS technologies. Various clinical screening tools have been suggested to aid in the identification of individuals who are at greater risk, using diverse strategies and with varied outcomes. We present here an overview of the primary clinical and molecular characteristics of various CPSs and summarize the existing clinical genomics data on the prevalence of CPSs in pediatric cancer patients. Additionally, we discuss several ethical issues, challenges, limitations, cost-effectiveness, and integration of genomic newborn screening for CPSs into a healthcare system. Furthermore, we assess the effectiveness of commonly utilized decision-support tools in identifying patients who may benefit from genetic counseling and/or direct genetic testing. This investigation highlights a tailored and systematic approach utilizing medical newborn screening tools such as the genome sequencing of high-risk newborns for CPSs, which could be a practical and cost-effective strategy in pediatric cancer care.
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  • 文章类型: Journal Article
    目的:评估社会经济人口统计学与BRCA1和BRCA2(BRCA1/2)突变患者建议和接受降低风险的双侧输卵管卵巢切除术(rrBSO)的相关性。
    方法:回顾性队列,半结构化定性访谈。
    方法:城市地区的BRCA1/2突变携带者,公立医院,种族和社会经济多样化的人口。
    方法:无。
    方法:主要结果是rrBSO推荐率和完成率。次要结果是与rrBSO完成相关的社会人口统计学变量。
    结果:该队列包括167例BRCA1/2突变患者,其中39%被鉴定为黑色(n=65),35%的白人(n=59)和19%的西班牙裔(n=32)。超过95%(n=159)接受了适合年龄的rrBSO的建议,52%(n=87)接受rrBSO。在单变量分析中,完成rrBSO的女性年龄较大(p=0.05),但不是在多变量分析中。rrBSO的完成与邮政编码中的居住相关,失业率较低,并且有记录的rrBSO建议(p<0.05)。所有仍在卫生系统接受护理的受试者(n=79)被邀请完成关于rrBSO决策的访谈,但只有四项调查完成,回应率为5.1%。出现的主题包括更年期,情感影响和家庭支持。
    结论:在这个研究不足的人群中,遗传咨询和财务健康替代与rrBSO摄取有关,强调遗传转介和解决健康的社会决定因素,将其作为改善癌症预防和减少健康不平等的机会。我们的研究表明,需要在边缘化社区中进行更多的以文化为中心的招募方法进行定性研究,以确保在有关rrBSO的文献中具有足够的代表性。
    OBJECTIVE: To assess the association of socioeconomic demographics with recommendation for and uptake of risk-reducing bilateral salpingo-oophorectomy (rrBSO) in patients with BRCA1 and BRCA2 (BRCA1/2) mutations.
    METHODS: Retrospective cohort, semistructured qualitative interviews.
    METHODS: BRCA1/2 mutation carriers at an urban, public hospital with a racially and socioeconomically diverse population.
    METHODS: None.
    METHODS: The primary outcomes were rate of rrBSO recommendation and completion. Secondary outcomes were sociodemographic variables associated with rrBSO completion.
    RESULTS: The cohort included 167 patients with BRCA1/2 mutations of whom 39% identified as black (n=65), 35% white (n=59) and 19% Hispanic (n=32). Over 95% (n=159) received the recommendation for age-appropriate rrBSO, and 52% (n=87) underwent rrBSO. Women who completed rrBSO were older in univariable analysis (p=0.05), but not in multivariable analysis. Completion of rrBSO was associated with residence in zip codes with lower unemployment and documented recommendation for rrBSO (p<0.05). All subjects who still received care in the health system (n=79) were invited to complete interviews regarding rrBSO decision-making, but only four completed surveys for a response rate of 5.1%. Themes that emerged included menopause, emotional impact and familial support.
    CONCLUSIONS: In this understudied population, genetic counselling and surrogates of financial health were associated with rrBSO uptake, highlighting genetics referrals and addressing social determinants of health as opportunities to improve cancer prevention and reduce health inequities. Our study demonstrates a need for more culturally centred recruiting methods for qualitative research in marginalised communities to ensure adequate representation in the literature regarding rrBSO.
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  • 文章类型: Journal Article
    目的:遗传了致病性BRCA1或BRCA2突变的女性患乳腺癌和卵巢癌的风险明显高于平均水平。存在几种癌症风险管理策略来解决这种增加的风险。关于选择哪些策略的决定很复杂,这些女性的个人和多因素。决策辅助工具(DAs)是帮助患者做出与健康相关的决策的工具。这项范围审查的目的是绘制与患者DA的开发和测试有关的证据,以寻找未受影响的BRCA突变携带者。
    方法:根据JoannaBriggsInstitute(JBI)的范围审查方法框架进行范围审查。
    方法:MEDLINE,EMBASE,CINAHL,Web的科学。语言或发布日期没有限制。还进行了手动搜索。
    方法:针对癌症风险管理的DA研究,设计用于或适用于未受乳腺癌或卵巢癌影响的具有致病性BRCA1或BRCA2突变的女性。
    方法:使用基于JBI仪器的表格提取数据,以提取研究特征和结果的细节。数据提取由两名审阅者独立进行。提取的数据制成表格。
    结果:包括了与21个DA的开发或测试相关的32个证据来源。四个DA是专门为癌症未受影响的BRCA突变携带者开发的。其中,两项指南涵盖了针对该人群的所有指南推荐的风险管理策略,尽管其中只有一项是公开的完整版本.所有调查DA有效性的研究都报告了DA对至少一项评估结果的积极影响,然而,在随机对照试验中,仅测试了6个DA。
    结论:本范围综述绘制了与开发和测试相关的文献的概况,适用于癌症未受影响的BRCA突变携带者的DA。
    OBJECTIVE: Women who inherit a pathogenic BRCA1 or BRCA2 mutation are at substantially higher risk of developing breast and ovarian cancer than average. Several cancer risk management strategies exist to address this increased risk. Decisions about which strategies to choose are complex, personal and multifactorial for these women. Decision aids (DAs) are tools that assist patients in making health-related decisions. The aim of this scoping review was to map evidence relating to the development and testing of patient DAs for cancer unaffected BRCA mutation carriers.
    METHODS: Scoping review conducted according to the Joanna Briggs Institute\'s (JBI\'s) scoping review methodological framework.
    METHODS: MEDLINE, EMBASE, CINAHL, Web of Science. No restrictions applied for language or publication date. A manual search was also performed.
    METHODS: Studies on DAs for cancer risk management designed for or applicable to women with a pathogenic BRCA1 or BRCA2 mutation who are unaffected by breast or ovarian cancer.
    METHODS: Data were extracted using a form based on the JBI instrument for extracting details of studies\' characteristics and results. Data extraction was performed independently by two reviewers. Extracted data were tabulated.
    RESULTS: 32 evidence sources relating to development or testing of 21 DAs were included. Four DAs were developed exclusively for cancer unaffected BRCA mutation carriers. Of these, two covered all guideline recommended risk management strategies for this population though only one of these was readily available publicly in its full version. All studies investigating DA effectiveness reported a positive effect of the DA under investigation on at least one of the outcomes evaluated, however only six DAs were tested in randomised controlled trials.
    CONCLUSIONS: This scoping review has mapped the landscape of the literature relating to developing and testing, DAs applicable to cancer unaffected BRCA mutation carriers.
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