CDM

CDM
  • 文章类型: Journal Article
    背景:建立队列研究之间的合作对于健康研究的进展至关重要。然而,这种协作受到跨队列的异构数据表示和数据共享的法律约束的阻碍。首先是由于在队列研究的数据收集和表示标准方面缺乏共识,通常通过应用数据协调过程来解决。由于提高了对隐私保护的意识和更严格的法规,第二个问题变得越来越重要。比如GDPR。联合学习已经成为一种保护隐私的替代方案,通过以分散的方式分析数据,在机构之间传输数据。
    方法:在本研究中,我们为一个由9个荷兰同伙组成的联盟建立了一个联邦学习基础设施,并提供了有关痴呆症病因的适当数据,包括摘录,变换,和用于数据协调的加载(ETL)管道。此外,我们使用观察性医学结果伙伴关系(OMOP)通用数据模型(CDM)评估了转换和标准化队列数据的挑战,并在其中一个使用联合算法的队列中评估了我们的工具.
    结果:我们成功地应用了我们的ETL工具,并观察到OMOPCDM对队列数据的完全覆盖。OMOP清洁发展机制促进了数据表示和标准化,但我们确定了队列特定数据字段和可用词汇表范围的局限性.由于本地环境中的技术限制,在多队列联合协作中出现了具体挑战,数据异质性,缺乏对数据的直接访问。
    结论:在本文中,我们描述了我们研究中遇到的这些挑战和局限性的解决方案.我们的研究显示了联合学习作为多队列研究的隐私保护解决方案的潜力,可增强数据和分析的可重复性和重用性。
    BACKGROUND: Establishing collaborations between cohort studies has been fundamental for progress in health research. However, such collaborations are hampered by heterogeneous data representations across cohorts and legal constraints to data sharing. The first arises from a lack of consensus in standards of data collection and representation across cohort studies and is usually tackled by applying data harmonization processes. The second is increasingly important due to raised awareness for privacy protection and stricter regulations, such as the GDPR. Federated learning has emerged as a privacy-preserving alternative to transferring data between institutions through analyzing data in a decentralized manner.
    METHODS: In this study, we set up a federated learning infrastructure for a consortium of nine Dutch cohorts with appropriate data available to the etiology of dementia, including an extract, transform, and load (ETL) pipeline for data harmonization. Additionally, we assessed the challenges of transforming and standardizing cohort data using the Observational Medical Outcomes Partnership (OMOP) common data model (CDM) and evaluated our tool in one of the cohorts employing federated algorithms.
    RESULTS: We successfully applied our ETL tool and observed a complete coverage of the cohorts\' data by the OMOP CDM. The OMOP CDM facilitated the data representation and standardization, but we identified limitations for cohort-specific data fields and in the scope of the vocabularies available. Specific challenges arise in a multi-cohort federated collaboration due to technical constraints in local environments, data heterogeneity, and lack of direct access to the data.
    CONCLUSIONS: In this article, we describe the solutions to these challenges and limitations encountered in our study. Our study shows the potential of federated learning as a privacy-preserving solution for multi-cohort studies that enhance reproducibility and reuse of both data and analyses.
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  • 文章类型: Journal Article
    在本文中,研究了具有张力的开孔碳纤维增强热塑性复合材料和热固性复合材料的损伤起始/扩展机理和破坏模式,压缩,并研究了轴承载荷,分别,通过实验和有限元模拟。使用组合载荷压缩(CLC)测试方法对样品进行实验评估,拉伸试验方法,和单剪切试验方法。宏观损伤起始的差异,进化模式,获得并分析了热塑性复合材料和热固性复合材料开孔结构在压缩载荷下的损伤特性。基于扫描电子显微镜的SEM图像,对纤维的微破坏模式进行了比较分析,矩阵,在压缩载荷下,热塑性和热固性复合材料的开孔结构中的纤维/基体界面。从微观破坏机理分析了热塑性和热固性复合材料的差异。最后,基于连续损伤力学(CDM),还建立了损伤模型,用于预测热塑性复合材料中损伤的开始和扩展。模型,可以捕获纤维断裂和基体裂纹,以及非线性响应,用于进行虚拟压缩测试,拉伸试验,和单剪切试验,分别。将数值模拟结果与提取的实验结果进行比较。位移-载荷曲线和破坏模式与实验结果吻合,表明有限元模型具有良好的可靠性。
    In this paper, the damage initiation/propagation mechanisms and failure modes of open-hole carbon fiber-reinforced thermoplastic composites and thermosetting composites with tension, compression, and bearing loads are investigated, respectively, by experiments and finite element simulations. The experimental evaluations are performed on the specimens using the Combined Loading Compression (CLC) test method, the tensile test method, and the single-shear test method. The differences in macroscopic damage initiation, evolution mode, and damage characteristics between thermoplastic composite materials and thermosetting composite material open-hole structures are obtained and analyzed under compressive load. Based on scanning electron microscope SEM images, a comparative analysis is conducted on the micro-failure modes of fibers, matrices, and fiber/matrix interfaces in the open-hole structures of thermoplastic and thermosetting composites under compressive load. The differences between thermoplastic and thermosetting composites were analyzed from the micro-failure mechanism. Finally, based on continuum damage mechanics (CDM), a damage model is also developed for predicting the initiation and propagation of damage in thermoplastic composites. The model, which can capture fiber breakage and matrix crack, as well as the nonlinear response, is used to conduct virtual compression tests, tensile test, and single-shear test, respectively. Numerical simulation results are compared with the extracted experimental results. The displacement-load curve and failure modes match the experimental result, which indicates that the finite element model has good reliability.
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  • 文章类型: Observational Study
    背景:老年人术后发病风险增加。存在许多风险分层工具,但是需要努力和人力。
    目的:本研究旨在利用开源技术建立老年患者普外科术后不良结局的预测模型,来自观察性健康数据科学和信息学的患者水平预测,用于内部和外部验证。
    方法:我们使用了观察性医疗结果伙伴关系通用数据模型和机器学习算法。主要结局是术后90天全因死亡率和急诊就诊的复合结果。次要结果是术后谵妄,术后住院时间延长(≥第75百分位数),住院时间延长(≥21天)。来自首尔国立大学Bundang医院(SNUBH)和首尔国立大学医院(SNUH)通用数据模型的数据的80%对20%的拆分用于模型训练和测试与外部验证。使用接收器工作特征曲线下面积(AUC)以95%CI评价模型性能。
    结果:分析了来自27,197(SNUBH)和32,857(SNUH)患者的数据。与随机森林相比,Adaboost,和决策树模型,最小绝对收缩率和选择算子逻辑回归模型对主要结局显示出良好的内部判别准确性(内部AUC0.723,95%CI0.701-0.744)和可运输性(外部AUC0.703,95%CI0.692-0.714).该模型还具有良好的术后谵妄的内部和外部AUC(内部AUC0.754,95%CI0.713-0.794;外部AUC0.750,95%CI0.727-0.772),术后住院时间延长(内部AUC0.813,95%CI0.800-0.825;外部AUC0.747,95%CI0.741-0.753),和住院时间延长(内部AUC0.770,95%CI0.749-0.792;外部AUC0.707,95%CI0.696-0.718)。与年龄或Charlson合并症指数相比,模型具有较好的预测性能。
    结论:衍生的模型将有助于临床医生和患者了解手术的个性化风险和收益。
    Older adults are at an increased risk of postoperative morbidity. Numerous risk stratification tools exist, but effort and manpower are required.
    This study aimed to develop a predictive model of postoperative adverse outcomes in older patients following general surgery with an open-source, patient-level prediction from the Observational Health Data Sciences and Informatics for internal and external validation.
    We used the Observational Medical Outcomes Partnership common data model and machine learning algorithms. The primary outcome was a composite of 90-day postoperative all-cause mortality and emergency department visits. Secondary outcomes were postoperative delirium, prolonged postoperative stay (≥75th percentile), and prolonged hospital stay (≥21 days). An 80% versus 20% split of the data from the Seoul National University Bundang Hospital (SNUBH) and Seoul National University Hospital (SNUH) common data model was used for model training and testing versus external validation. Model performance was evaluated using the area under the receiver operating characteristic curve (AUC) with a 95% CI.
    Data from 27,197 (SNUBH) and 32,857 (SNUH) patients were analyzed. Compared to the random forest, Adaboost, and decision tree models, the least absolute shrinkage and selection operator logistic regression model showed good internal discriminative accuracy (internal AUC 0.723, 95% CI 0.701-0.744) and transportability (external AUC 0.703, 95% CI 0.692-0.714) for the primary outcome. The model also possessed good internal and external AUCs for postoperative delirium (internal AUC 0.754, 95% CI 0.713-0.794; external AUC 0.750, 95% CI 0.727-0.772), prolonged postoperative stay (internal AUC 0.813, 95% CI 0.800-0.825; external AUC 0.747, 95% CI 0.741-0.753), and prolonged hospital stay (internal AUC 0.770, 95% CI 0.749-0.792; external AUC 0.707, 95% CI 0.696-0.718). Compared with age or the Charlson comorbidity index, the model showed better prediction performance.
    The derived model shall assist clinicians and patients in understanding the individualized risks and benefits of surgery.
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  • 文章类型: Journal Article
    目的:本研究旨在为精准医疗医院信息系统(P-HIS)开发基于云的数字医疗保健系统。方法:2020年开展P-HIS临床术语和代码国际标准化工作。2021年,韩国首个三级医院云建立并成功实施。结果:P-HIS在韩国第一家三级综合医院得到应用。为医疗支持开发了通用数据模型兼容的精准医疗/医疗服务解决方案。利用大数据获取并构建精准医疗的超优质医疗数据。使用P-HIS联盟和基于全球通用数据模型的观察医学结果合作伙伴网络实现了全球联合商业化和传播/传播。结论:为今后提供个性化精准医疗服务,建立和使用大医疗数据至关重要。
    Aim: This study aims to develop a cloud-based digital healthcare system for precision medical hospital information systems (P-HIS). Methods: In 2020, international standardization of P-HIS clinical terms and codes was performed. In 2021, South Korea\'s first tertiary hospital cloud was established and implemented successfully. Results: P-HIS was applied at Korea\'s first tertiary general hospital. Common data model-compatible precision medicine/medical service solutions were developed for medical support. Ultrahigh-quality medical data for precision medicine were acquired and built using big data. Joint global commercialization and dissemination/spreading were achieved using the P-HIS consortium and global common data model-based observational medical outcome partnership network. Conclusion: To provide personalized precision medical services in the future, establishing and using big medical data is essential.
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  • 文章类型: Journal Article
    所有集成电路(IC)都需要片上静电放电(ESD)保护。常规的片上ESD保护依赖于用于ESD的基于Si内PN结的器件结构。然而,这种基于SiPN的ESD保护解决方案带来了与ESD保护设计开销相关的重大挑战,包括寄生电容,漏电流,和噪音,以及芯片面积消耗大、IC布局层规划难度大。随着IC技术的不断进步,ESD保护器件的设计开销效应对现代IC变得不可接受,这是先进IC的一个新兴的可靠性设计挑战。在本文中,我们回顾了基于石墨烯的破坏性芯片ESD保护的概念发展,包括新型石墨烯纳米机电系统(gNEMS)ESD开关和石墨烯ESD互连。这篇评论讨论了模拟,设计,和测量gNEMSESD保护结构和石墨烯ESD保护互连。该评论旨在激发对未来片上ESD保护的非传统思考。
    On-chip electrostatic discharge (ESD) protection is required for all integrated circuits (ICs). Conventional on-chip ESD protection relies on in-Si PN junction-based device structures for ESD. However, such in-Si PN-based ESD protection solutions pose significant challenges related to ESD protection design overhead, including parasitic capacitance, leakage current, and noises, as well as large chip area consumption and difficulty in IC layout floor planning. The design overhead effects of ESD protection devices are becoming unacceptable to modern ICs as IC technologies continuously advance, which is an emerging design-for-reliability challenge for advanced ICs. In this paper, we review the concept development of disruptive graphene-based on-chip ESD protection comprising a novel graphene nanoelectromechanical system (gNEMS) ESD switch and graphene ESD interconnects. This review discusses the simulation, design, and measurements of the gNEMS ESD protection structures and graphene ESD protection interconnects. The review aims to inspire non-traditional thinking for future on-chip ESD protection.
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  • 文章类型: Journal Article
    半胱氨酸被认为是中国仓鼠卵巢(CHO)细胞培养中的必需氨基酸。补料分批培养过程中优化的半胱氨酸供应支持重组CHO细胞系的蛋白质生产能力。然而,我们观察到CHO生产细胞系在低细胞密度下接种在富含半胱氨酸大于2.5mm的化学成分确定的培养基中导致传代期间细胞生长显著降低,阻碍种子训练性能和规模扩大。为了研究潜在的机制,改变接种细胞密度和从低到高半胱氨酸浓度的初始半胱氨酸浓度,然后分析细胞培养性能。此外,细胞周期分析,进行了活性氧(ROS)的细胞内定量以及通过下一代测序进行的转录组学分析。我们的结果表明,在高初始半胱氨酸浓度下以低细胞密度接种的CHO细胞遇到了增加的氧化应激,导致p21介导的细胞周期停滞在G1/S期。由此产生的氧化应激导致内质网中的氧化还原失衡和未折叠蛋白反应的激活以及主要的抗氧化核因子样2反应途径。研究中鉴定了与氧化应激和戊糖磷酸途径抑制相关的潜在特征基因。最后,该研究表明,在富含半胱氨酸的细胞培养基中,以更高的浓度接种细胞可以抵消氧化应激。
    Cysteine is considered an essential amino acid in the cultivation of Chinese hamster ovary (CHO) cells. An optimized cysteine supply during fed-batch cultivation supports the protein production capacity of recombinant CHO cell lines. However, we observed that CHO production cell lines seeded at low cell densities in chemically defined media enriched with cysteine greater than 2.5 mm resulted in markedly reduced cell growth during passaging, hampering seed train performance and scale-up. To investigate the underlying mechanism, seeding cell densities and initial cysteine concentrations ranging from low to high cysteine concentrations were varied followed by an analysis of cell culture performance. Additionally, cell cycle analysis, intracellular quantification of reactive oxygen species (ROS) as well as transcriptomic analyses by next-generation sequencing were carried out. Our results demonstrate that CHO cells seeded at low cell densities at high initial cysteine concentrations encountered increased oxidative stress leading to a p21-mediated cell cycle arrest in the G1/S phase. The resulting oxidative stress caused redox imbalance in the endoplasmic reticulum and activation of the unfolded protein response as well as the major antioxidant nuclear factor-like 2 response pathways. Potential signature genes related to oxidative stress and the inhibition of the pentose phosphate pathway were identified in the study. Finally, the study presents that seeding cells at a higher concentration counteract oxidative stress in cysteine-enriched cell culture media.
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  • 文章类型: Journal Article
    虽然全球北方历史上负责大气中大部分温室气体的排放,新兴工业化国家(NIC)的排放量预计将在未来几年超过发达国家。同时,NIC正在攀登全球经济的阶梯,提高他们在全球舞台上的竞争力,赶上发达经济体的技术能力。在这种背景下,本文探讨了NIC中气候变化减缓技术(CCCMT)的创新与合作。研究的问题是,创新和扩散CCMT的倾向是否受到与两个高度发达国家的技术合作的影响,德国和美国。NIC的样本包括金砖国家(巴西,俄罗斯,印度,中国,南非)加上以色列,墨西哥,土耳其,在1995年至2015年的一个小组中。实证结果表明,与德国和美国的合作对于NIC中的国内CCMT创新非常重要。这些发现很重要,因为,超越有关清洁发展机制(CDM)和相关的《气候公约》进程等全球气候治理工具的优缺点的文献,他们表明,气候和环境技术的合作可能成为一个关键工具,显着提高机会,以保持符合巴黎气候协定。最后,对NIC和发展中国家的政策建议是,最重要的是,着力培育强大的技术创新体系,包括加强国内知识产权(IPR),以及加强与发达国家的技术合作。
    While the Global North is historically responsible for the majority of greenhouse gas emissions in the atmosphere, Newly Industrializing Countries (NICs) are expected to overtake developed country emissions in the coming years. At the same time, NICs are climbing the ladder of the global economy, increasing their competitiveness on the global stage and catching up with technological competencies of developed economies. Against this background, this paper explores innovation and collaboration in Climate Change Mitigation Technologies (CCMTs) in NICs. The research question is whether the propensity to innovate and diffuse CCMTs is impacted by technological collaboration with two highly developed countries, Germany and The United States. The sample of NICs includes the BRICS (Brazil, Russia, India, China, South Africa) plus Israel, Mexico, and Turkey, in a panel from 1995 to 2015. The empirical results suggest that collaboration with both Germany and the U.S. is highly significant for domestic CCMT innovation in NICs. These findings are important because, stepping beyond the literature on the merits and drawbacks of global climate governance tools such as the Clean Development Mechanism (CDM) and related UNFCCC processes, they show that collaboration for climate and environmental technologies could become a key tool to significantly improve the chances to stay in line with the Paris Climate Agreement. Finally, the policy advice for NICs and developing countries is to, above all else, focus on incubating strong technological innovation systems, including strengthening domestic Intellectual Property Rights (IPR), as well as to enhance technological collaboration with developed countries.
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  • 文章类型: Journal Article
    在研究应用中,诸如酒精相关问题和抑郁之类的心理健康问题通常使用从因子分析或项目反应理论模型中得出的量表评分或潜在特征评分进行评估和评价.本教程论文演示了使用认知诊断模型(CDM)作为一种替代方法来表征项目级数据可用时的年轻人的心理健康问题。现有的测量方法侧重于在尺度水平上作为一维结构来估计给定心理健康问题的一般严重程度,而不考虑相关心理健康问题的其他症状。流行的方法可能会忽略项目级别相关症状的临床上有意义的表现。当前的研究使用来自大学生的项目级数据说明CDM(719名受访者中有40个项目;男性占34.6%,83.9%白色,和16.3%的一年级学生)。具体来说,我们评估了四个假定域的星座(即,与酒精有关的问题,焦虑,敌意,anddepression)asasetofattributeprofilesusingCDM.Afteraccountingfortheimpactofeachattribute(i.e.假定域)对属性配置文件的估计,结果表明,当项目或属性信息有限时,CDM可以利用相关属性中的项目级别信息来生成潜在有意义的估计和配置文件,与独立分析每个属性相比。我们介绍了一种新颖的视觉检查辅助工具,镜头图,用于量化这一增益。CDM可能是一种有用的分析工具,可以捕获受访者的风险和弹性,以进行预防研究。
    In research applications, mental health problems such as alcohol-related problems and depression are commonly assessed and evaluated using scale scores or latent trait scores derived from factor analysis or item response theory models. This tutorial paper demonstrates the use of cognitive diagnosis models (CDMs) as an alternative approach to characterizing mental health problems of young adults when item-level data are available. Existing measurement approaches focus on estimating the general severity of a given mental health problem at the scale level as a unidimensional construct without accounting for other symptoms of related mental health problems. The prevailing approaches may ignore clinically meaningful presentations of related symptoms at the item level. The current study illustrates CDMs using item-level data from college students (40 items from 719 respondents; 34.6% men, 83.9% White, and 16.3% first-year students). Specifically, we evaluated the constellation of four postulated domains (i.e., alcohol-related problems, anxiety, hostility, and depression) as a set of attribute profiles using CDMs. After accounting for the impact of each attribute (i.e., postulated domain) on the estimates of attribute profiles, the results demonstrated that when items or attributes have limited information, CDMs can utilize item-level information in the associated attributes to generate potentially meaningful estimates and profiles, compared to analyzing each attribute independently. We introduce a novel visual inspection aid, the lens plot, for quantifying this gain. CDMs may be a useful analytical tool to capture respondents\' risk and resilience for prevention research.
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  • 文章类型: Journal Article
    UNASSIGNED: To evaluate the real-world incidence of endophthalmitis after intravitreal anti-vascular endothelial growth factor (VEGF) injection through the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM).
    UNASSIGNED: Patients with endophthalmitis developing within 6 weeks after intravitreal anti-VEGF injections were identified in three large OMOP CDM databases.
    UNASSIGNED: We identified 23,490 patients who received 128,123 intravitreal anti-VEGF injections. The incidence rates of endophthalmitis were 15.75 per 10,000 patients and 2.97 per 10,000 injections. The incidence rates of endophthalmitis for bevacizumab, ranibizumab, and aflibercept (per 10,000 injections) were 3.65, 1.39, and 0.76, respectively. The annual incidences have been below 5.00 per 10,000 injections since 2011 although the number of intravitreal anti-VEGF injections have been increasing. Bevacizumab presented a higher incidence rate for endophthalmitis than ranibizumab and aflibercept (incidence rate ratio = 3.17; P value = 0.021).
    UNASSIGNED: The incidence of endophthalmitis after intravitreal anti-VEGF injections have been stabilized since 2011 despite the explosive increase of anti-VEGF injections. The off-label use of bevacizumab raised more endophthalmitis significantly. The OMOP CDM, which includes off-label uses, laboratory data, and scalable standardized database, could provide a novel strategy to reveal real-world evidence especially in ophthalmic fields.
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  • 文章类型: Journal Article
    Cell-derived matrices (CDM) are the decellularised extracellular matrices (ECM) of tissues obtained by the laboratory culture process. CDM is developed to mimic, to a certain extent, the properties of the needed natural tissue and thus to obviate the use of animals. The composition of CDM can be tailored for intended applications by carefully optimising the cell sources, culturing conditions and decellularising methods. This unique advantage has inspired the increasing use of CDM for biomedical research, ranging from stem cell niches to disease modelling and regenerative medicine. However, while much effort is spent on extracting different types of CDM and exploring their utilisation, little is spent on the scale-up aspect of CDM production. The ability to scale up CDM production is essential, as the materials are due for clinical trials and regulatory approval, and in fact, this ability to scale up should be an important factor from the early stages. In this review, we first introduce the current CDM production and characterisation methods. We then describe the existing scale-up technologies for cell culture and highlight the key considerations in scaling-up CDM manufacturing. Finally, we discuss the considerations and challenges faced while converting a laboratory protocol into a full industrial process. Scaling-up CDM manufacturing is a challenging task since it may be hindered by technologies that are not yet available. The early identification of these gaps will not only quicken CDM based product development but also help drive the advancement in scale-up cell culture and ECM extraction.
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