BugBase

  • 文章类型: English Abstract
    近年来,鄱阳湖微塑料的环境污染日益受到重视。选取鄱阳湖白沙湖为研究区,收集了白沙湖的水和沉积物以及其中的微塑料样品,微塑料的聚合物类型被确定为聚乙烯(PE),聚酯(PET),聚丙烯(PP),和聚苯乙烯(PS)使用傅立叶红外光谱。我们还分析了水中细菌群落的结构组成,在沉积物中,并在微塑料表面使用16S高通量测序。微塑料表面细菌的物种丰富度和多样性低于周围水和沉积物中的细菌。NMDS分析结果表明,微塑料表面的细菌群落结构与周围沉积物和水中的细菌群落结构有很大差异。水和沉积物中的细菌群落组成与微塑料表面的细菌群落组成不同,微塑料表面上的优势细菌门是变形杆菌和拟杆菌属,它们在微塑料表面的相对丰度高于沉积物。变形杆菌的相对丰度高于水中的相对丰度。拟杆菌和放线菌的相对丰度明显低于水。Massilia和假单胞菌是微塑料表面的优势属,它们的相对丰度明显高于周围水和沉积物中的丰度。BugBase表型预测显示,含有移动元素的相对丰度,生物膜的形成,潜在致病性,微塑料细菌群落的胁迫耐受性表型明显高于周围水和沉积物。结果表明,微塑料可能导致了有害细菌的传播,包括致病菌,并增加了细菌群落的潜在致病性。此外,微塑料表面细菌群落具有较高的移动基因元素含量表型。从微观层面揭示微塑料污染对湿地生态的潜在危害,可为维持湿地生态稳定提供科学参考。
    In recent years, the environmental pollution of microplastics in Poyang Lake has received increasing attention. Baisha Lake of Poyang Lake was selected as the study area, and samples of water and sediments of Baisha Lake and the microplastics therein were collected, and the polymer types of microplastics were identified as polyethylene (PE), polyester (PET), polypropylene (PP), and polystyrene (PS) using Fourier infrared spectroscopy. We also analyzed the structural composition of bacterial communities in water, in sediments, and on microplastic surfaces using 16S high-throughput sequencing. The species richness and diversity of bacteria on the microplastic surfaces were lower than those in the surrounding water and sediments. The results of NMDS analysis showed that the bacterial community structures on the microplastic surfaces differed greatly from those in the surrounding sediments and water. The bacterial community composition in water and sediment differed from that on the microplastic surfaces, and the dominant bacterial phyla on the microplastic surfaces were Proteobacteria and Bacteroidota, and their relative abundance on the microplastic surfaces was higher than that in sediment. The relative abundance of Proteobacteria was higher than that in water. The relative abundances of Bacteroidota and Actinobacteriota were significantly lower than that of water. Massilia and Pseudomonas were the dominant genera on the microplastic surfaces, and their relative abundances were significantly higher than those in the surrounding water and sediments. BugBase phenotype prediction revealed that the relative abundance of contains mobile elements, biofilm formation, potential pathogenicity, and stress tolerance phenotypes of microplastic bacterial communities were significantly higher than those of the surrounding water and sediments. The results revealed that microplastics may have contributed to the spread of harmful bacteria, including pathogenic bacteria, and increased the potential pathogenicity of bacterial communities. Additionally, microplastic surface bacterial communities had higher phenotypes of mobile gene element content. Revealing the potential harm of microplastic pollution to wetland ecology at the micro level may provide a scientific reference for maintaining the ecological stability of wetlands.
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  • 文章类型: Journal Article
    不断增长的数据表明,肠道微生物组可能导致高脂血症发病率上升。枣醋降低血脂,保护肝脏,并降低氧化能力,然而,目前尚不清楚这是否是由于肠道菌群。为了进一步研究肠道菌群在大枣醋治疗高脂血症中的作用,我们研究了枣醋的作用是否与肠道微生物组的调节有关。
    使用30只雄性ICR小鼠。对照组(CON),高脂饮食(HFD)组,醋组(VIN)每组由10只雌性ICR小鼠连续喂食8周。对于每一种治疗,我们记录了身体质量,肝脏指数,血脂水平,和氧化应激状态。我们还使用高通量16srRNA测序分析了小鼠粪便,以研究大枣醋的降血脂作用与抗氧化活性之间的关系以及它如何影响肠道微生物组。
    枣醋使体重减少了19.92%,血清TC,TG,LDL-C下降25.09%,26.83%,和11.66%,HDL-C增加了1.44倍,血清AST和ALT分别下降26.36%和34.87%,血SOD和GSH-Px分别增加1.35倍和1.60倍,分别。血MDA下降33.21%,肝脏的SOD和GSH-Px增加了1.32倍和1.60倍,分别,HFD小鼠肝脏MDA降低48.96%。肠道微生物组分析表明,枣醋使肠道微生物ASV计数增加了13.46%,高脂饮食小鼠的F/B(Firmicutes/Bacteroidota)比率为2.08倍,该比例与TC呈显著负相关,TG,LDL-C与HDL-C呈正相关醋组中的生物标记细菌包括乳杆菌和乳杆菌,与HDL-C密切相关,SOD,GSH-Px和LDL-C呈阴性,TC,TG。枣醋增加了有氧运动的丰度,包含移动元素,兼性有氧运动的2.84倍,1.45倍,和2.40倍,而潜在病原体的丰度下降了44.72%,根据BugBase的研究。KEGG分析表明,大枣醋主要体现在基因功能的生物学过程中,包括胰高血糖素信号系统,HIF-1信号通路,脂肪细胞因子信号通路,氨基糖,和核苷酸糖代谢,等等。
    基于这些发现,红枣醋可能通过控制肠道微生物组和增强抗氧化能力来降低高脂血症。
    UNASSIGNED: Growing data indicate that the gut microbiome may contribute to the rising incidence of hyperlipoidemia. Jujube vinegar lowers lipids, protects the liver, and reduces oxidant capacity, however, it is unknown whether this is due to the gut flora. To further research the role of the gut microbiome in treating hyperlipidemia with jujube vinegar, we looked into whether the action of jujube vinegar is related to the regulation of the gut microbiome.
    UNASSIGNED: Thirty male ICR mice were used. The control group (CON), the high-fat diet (HFD) group, and the vinegar group (VIN) each consisted of ten female ICR mice fed consistently for eight weeks. For each treatment, we kept track of body mass, liver index, blood lipid levels, and oxidative stress state. We also analyzed mouse feces using high-throughput 16srRNA sequencing to examine the relationship between jujube vinegar\'s hypolipidemic effect and antioxidant activity and how it affects the gut microbiome.
    UNASSIGNED: Jujube vinegar reduced body weight by 19.92%, serum TC, TG, and LDL-C by 25.09%, 26.83%, and 11.66%, and increased HDL-C by 1.44 times, serum AST and ALT decreased by 26.36% and 34.87% respectively, the blood levels of SOD and GSH-Px increased 1.35-fold and 1.60-fold, respectively. While blood MDA decreased 33.21%, the liver\'s SOD and GSH-Px increased 1.32-fold and 1.60-fold, respectively, and the liver\'s MDA decreased 48.96% in HFD mice. The gut microbiome analysis revealed that jujube vinegar increased the intestinal microbial ASV count by 13.46%, and the F/B (Firmicutes/Bacteroidota) ratio by 2.08-fold in high-fat diet mice, and the proportion was significantly inversely correlated with TC, TG, and LDL-C and positively correlated with HDL-C. Biomarker bacteria in the vinegar group included Lactobacillaceae and Lactobacillus, which correlated favorably with HDL-C, SOD, and GSH-Px and negatively with LDL-C, TC, and TG. Jujube vinegar increased the abundance of the Aerobic, Contains Mobile Elements, and Facultative Aerobic by 2.84 times, 1.45 times, and 2.40 times, while decreased the abundance of Potential pathogens by 44.72%, according to the BugBase study. The KEGG analysis showed that jujube vinegar was predominantly reflected in the biological process of gene function and related to signal transduction pathways, including glucagon signaling system, HIF-1 signaling pathway, adipocytokine signaling pathway, amino sugar, and nucleotide sugar metabolism, and so forth.
    UNASSIGNED: Based on these findings, jujube vinegar may reduce hyperlipoidemia by controlling the gut microbiome and enhancing antioxidant capacity.
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  • 文章类型: Journal Article
    The response of soil bacterial communities from farmland ecosystems to cadmium (Cd) pollution, in which a steep concentration gradient of more than 100 mg/kg has naturally formed, has not previously been fully reported. In this study, a field investigation was conducted in a typical severe Cd-polluted farmland ecosystem, and the bacterial community response to the steep Cd gradient was analyzed. The results showed that Cd concentration sharply decreased from 159.2 mg/kg to 4.18 mg/kg among four sampling sites alongside an irrigation canal over a distance of 150 m. Bacterial diversity and richness were significantly lower in highly polluted sites, and random forest analysis indicated that Cd gradient played a decisive role in reducing alpha diversity. Redundancy analysis (RDA) and co-occurrence network indicated that the synergistic effects of pH, Cd, and phosphorus were the main drivers shaping community structure. The functional results predicted by BugBase suggested that the bacterial community may adapt to the harsh environment by recruiting Cd-resistant microbes and improving oxidative stress tolerance of the whole community. Cd-resistant microorganisms such as Burkholderia, Bradyrhizobium, and Sulfurifustis, which directly or indirectly participate in diminishing oxidative damage of Cd, may play essential roles in maintaining community stability and might be potential bacterial resources for the bioremediation of Cd pollution.
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