Biological Sciences

生物科学
  • 文章类型: Journal Article
    肠道微生物群失调与包括阿尔茨海默病(AD)在内的许多神经系统疾病有关。AD的主要危险因素是载脂蛋白E(APOE)基因的多态性,影响肠道微生物组组成。为了探索AD的肠-脑轴,需要自然发展的AD样病变的长寿命动物模型。Octodondegus(degu)表现出自发性AD样症状和ApoE突变,使它们适合研究AD遗传决定子和肠道微生物组之间的相互作用。我们使用16SrRNA基因扩增子测序分析了50人和32人的APOE基因型与肠道微生物组之间的关联。发现deguApoE突变与degu的肠道微生物变化之间存在显着关联,特别是Ruminoccaceae和Akkermansiaceae的消耗和Prevotellaceae的富集,在AD患者中看到的镜像模式。以前建议改变的分类单元与AD有关,验证Degu作为研究AD/微生物组串扰的非常规模型。
    Gut microbiome dysbiosis is linked to many neurological disorders including Alzheimer\'s disease (AD). A major risk factor for AD is polymorphism in the apolipoprotein E (APOE) gene, which affects gut microbiome composition. To explore the gut-brain axis in AD, long-lived animal models of naturally developing AD-like pathologies are needed. Octodon degus (degu) exhibit spontaneous AD-like symptoms and ApoE mutations, making them suitable for studying the interplay between AD genetic determinants and gut microbiome. We analyzed the association between APOE genotype and gut microbiome in 50 humans and 32 degu using16S rRNA gene amplicon sequencing. Significant associations were found between the degu ApoE mutation and gut microbial changes in degu, notably a depletion of Ruminococcaceae and Akkermansiaceae and an enrichment of Prevotellaceae, mirroring patterns seen in people with AD. The altered taxa were previously suggested to be involved in AD, validating the degu as an unconventional model for studying the AD/microbiome crosstalk.
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  • 文章类型: Journal Article
    皮层结构和功能紧密相连,塑造人类行为的神经基础。本研究探讨了皮质表面积(SA)一个结构特征,影响人类视觉感知中的计算特性。结合心理物理学,神经影像学,和计算建模方法,我们发现,顶叶和额叶皮层中SA的变化与运动知觉任务中不同的行为模式有关。这些行为差异对应于分裂归一化模型中的特定参数,表明SA对皮层电路的空间组织有独特的贡献。这项工作强调了皮层架构在修改感知基础的计算过程中的重要性,增强我们对结构差异如何影响神经功能和行为的理解。
    Cortical structure and function are closely linked, shaping the neural basis of human behavior. This study explores how cortical surface area (SA), a structural feature, influences computational properties in human visual perception. Using a combination of psychophysical, neuroimaging, and computational modeling approaches, we find that variations in SA across the parietal and frontal cortices are linked to distinct behavioral patterns in a motion perception task. These differences in behavior correspond to specific parameters within a divisive normalization model, indicating a unique contribution of SA to the spatial organization of cortical circuitry. This work highlights the importance of cortical architecture in modifying computational processes that underlie perception, enhancing our understanding of how structural differences can influence neural function and behavior.
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  • 文章类型: Journal Article
    肿瘤浸润性T细胞中的组织驻留样表型可限制全身性抗肿瘤免疫。在新辅助PD-L1免疫检查点阻断(ICB)和转化生长因子β(TGF-β)中和后,在头颈癌患者中观察到增强的全身抗肿瘤免疫力。在口腔癌的同基因模型中使用T细胞受体(TCR)测序和功能免疫测定,我们剖析了这些治疗对增强全身免疫的相对贡献.向ICB中添加TGF-β中和剂导致扩增和耗尽的CD8+肿瘤浸润淋巴细胞(TIL)流入循环和更大的全身抗肿瘤免疫力。这种增强的出口与Itgae(CD103)及其上游调节剂Znf683的表达降低有关。治疗后循环CD8+T细胞表达较高的Cxcr3,在用双重TGF-β中和和ICB治疗的患者的样品中也进行了观察。这些发现为在明确治疗局部疾病之前在新诊断的癌症患者中使用PD-L1ICB和TGF-β中和作用提供了科学依据。
    A tissue resident-like phenotype in tumor infiltrating T cells can limit systemic anti-tumor immunity. Enhanced systemic anti-tumor immunity is observed in head and neck cancer patients after neoadjuvant PD-L1 immune checkpoint blockade (ICB) and transforming growth factor β (TGF-β) neutralization. Using T cell receptor (TCR) sequencing and functional immunity assays in a syngeneic model of oral cancer, we dissect the relative contribution of these treatments to enhanced systemic immunity. The addition of TGF-β neutralization to ICB resulted in the egress of expanded and exhausted CD8+ tumor infiltrating lymphocytes (TILs) into circulation and greater systemic anti-tumor immunity. This enhanced egress associated with reduced expression of Itgae (CD103) and its upstream regulator Znf683. Circulating CD8+ T cells expressed higher Cxcr3 after treatment, an observation also made in samples from patients treated with dual TGF-β neutralization and ICB. These findings provide the scientific rationale for the use of PD-L1 ICB and TGF-β neutralization in newly diagnosed patients with carcinomas prior to definitive treatment of locoregional disease.
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  • 文章类型: Journal Article
    探索认知能力的性别差异可以为人类大脑功能提供重要的见解。
    我们的研究利用了磁共振测温等先进技术,标准工作记忆n-back任务,和功能磁共振成像,以研究大脑温度的性别变化是否与不同的神经元反应和工作记忆能力相关。
    我们观察到男性在工作记忆任务期间平均大脑温度显著下降,女性身上没有的现象。尽管女性大脑温度的变化明显低于男性,我们发现绝对温度变化(ATC)与认知表现之间存在反比关系,与神经活动引起的血氧水平依赖性(BOLD)信号变化有关。这表明在女性中,ATC是认知表现和BOLD反应之间联系的关键决定因素,在男性中没有明显的联系。然而,我们还观察到其他女性特异性BOLD反应与男性的任务表现相当。
    我们的结果表明,女性通过激活额外的神经元网络来支持工作记忆,从而补偿大脑对温度的敏感性。这项研究不仅强调了认知过程中性别差异的复杂性,而且为理解温度波动如何影响大脑功能开辟了新途径。
    UNASSIGNED: Exploring gender differences in cognitive abilities offers vital insights into human brain functioning.
    UNASSIGNED: Our study utilized advanced techniques like magnetic resonance thermometry, standard working memory n-back tasks, and functional MRI to investigate if gender-based variations in brain temperature correlate with distinct neuronal responses and working memory capabilities.
    UNASSIGNED: We observed a significant decrease in average brain temperature in males during working memory tasks, a phenomenon not seen in females. Although changes in female brain temperature were significantly lower than in males, we found an inverse relationship between the absolute temperature change (ATC) and cognitive performance, alongside a correlation with blood oxygen level dependent (BOLD) signal change induced by neural activity. This suggests that in females, ATC is a crucial determinant for the link between cognitive performance and BOLD responses, a linkage not evident in males. However, we also observed additional female specific BOLD responses aligned with comparable task performance to that of males.
    UNASSIGNED: Our results suggest that females compensate for their brain\'s heightened temperature sensitivity by activating additional neuronal networks to support working memory. This study not only underscores the complexity of gender differences in cognitive processing but also opens new avenues for understanding how temperature fluctuations influence brain functionality.
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  • 文章类型: Journal Article
    大脑功能依赖于协调的突触小泡动力学和受控的神经递质释放。多个生物分子缩合物在突触前和突触后共存,它们由结合结合的缩合驱动,相分离,和渗滤。在突触前,突触蛋白的内在无序区域(IDR)是凝聚的驱动因素,能够使突触囊泡(SV)聚集。尽管IDR的序列在进化过程中保守性差,我们的计算分析揭示了突触前蛋白的IDR中存在非随机组成偏差和序列模式(分子语法).例如,突触素-1,它对SV的缩合至关重要,含有精氨酸残基的保守化合价和沿着线性序列彼此分离的极性和脯氨酸残基的区块。我们表明,这些保守的特征对于在体外和细胞中驱动突触素1缩合至关重要。我们的结果强调了保守的分子语法如何驱动突触前关键蛋白的凝聚。
    Brain functioning relies on orchestrated synaptic vesicle dynamics and controlled neurotransmitter release. Multiple biomolecular condensates coexist at the pre- and post-synapse and they are driven by condensation that combines binding, phase separation, and percolation. In pre-synapses, intrinsically disordered regions (IDRs) of synaptic proteins are drivers of condensation that enable clustering of synaptic vesicles (SVs). Although sequences of IDRs are poorly conserved across evolution, our computational analysis reveals the existence of non-random compositional biases and sequence patterns (molecular grammars) in IDRs of pre-synaptic proteins. For example, synapsin-1, which is essential for condensation of SVs, contains a conserved valence of arginine residues and blocks of polar and proline residues that are segregated from one another along the linear sequence. We show that these conserved features are crucial for driving synapsin-1 condensation in vitro and in cells. Our results highlight how conserved molecular grammars drive the condensation of key proteins at the pre-synapse.
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  • 文章类型: Journal Article
    在疟疾感染期间,疟原虫子孢子,寄生虫快速移动的阶段,被蚊子注射到哺乳动物宿主的皮肤中。在皮肤上,子孢子需要通过真皮组织迁移进入血管。子孢子运动性对感染至关重要,但尚未得到很好的理解。这里,我们使用了具有可调纤维结构的胶原水凝胶,作为皮肤的体外模型。将子孢子注入水凝胶后,我们在三维(3D)中分析了它们的运动性。我们发现子孢子表现出手性运动,因为它们大多遵循右手螺旋轨迹。在高浓度胶原蛋白凝胶中,子孢子具有较低的瞬时速度,但与低浓度胶原蛋白凝胶相比,表现出更直的轨迹,这导致更长的净流离失所和更快的传播。一起来看,我们的研究表明子孢子适应环境的内在机制,这可以帮助他们成功离开皮肤组织。
    During malaria infection, Plasmodium sporozoites, the fast-moving stage of the parasite, are injected by a mosquito into the skin of the mammalian host. In the skin, sporozoites need to migrate through the dermal tissue to enter the blood vessel. Sporozoite motility is critical for infection but not well understood. Here, we used collagen hydrogels with tunable fiber structures, as an in vitro model for the skin. After injecting sporozoites into the hydrogel, we analyzed their motility in three-dimension (3D). We found that sporozoites demonstrated chiral motility, in that they mostly follow right-handed helical trajectories. In high-concentration collagen gel, sporozoites have lower instantaneous speed, but exhibit straighter tracks compared to low-concentration collagen gel, which leads to longer net displacement and faster dissemination. Taken together, our study indicates an inner mechanism for sporozoites to adapt to the environment, which could help with their successful exit from the skin tissue.
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  • 文章类型: Journal Article
    胆囊癌(GBC)的特征是恶性程度高,预后差。这项研究表明,GBC组织中circEZH2经常上调,并与GBC患者的晚期肿瘤淋巴结转移(TNM)分期相关。体外和体内实验证实,circEZH2促进了GBC的增殖并抑制了GBC的铁凋亡。此外,这项研究发现circEZH2调节GBC细胞的脂质代谢重编程。机械上,circEZH2通过在GBC细胞中形成miR-556-5p促进SCD1表达。此外,IGF2BP2以依赖m6A的方式增强了circEZH2的稳定性,而circEZH2通过与IGF2BP2结合抑制IGF2BP2的泛素化和降解。一起来看,我们的研究结果表明,circEZH2通过circEZH2和IGF2BP2之间的正反馈回路上调,通过GBC中的miR-556-5p/SCD1轴促进GBC进展和脂质代谢重编程.circEZH2可以作为GBC的潜在治疗靶点。
    Gallbladder cancer (GBC) is characterized by a high degree of malignancy and a poor prognosis. This study revealed that circEZH2 was frequently upregulated in GBC tissues and correlated with advanced tumor-node-metastasis (TNM) stage in GBC patients. In vitro and in vivo experiments confirmed that circEZH2 promoted the proliferation and inhibited the ferroptosis of GBC. Besides, this study discovered that circEZH2 regulated lipid metabolism reprogramming in GBC cells. Mechanistically, circEZH2 promotes SCD1 expression by sponging miR-556-5p in GBC cells. In addition, IGF2BP2 enhances the stability of circEZH2 in an m6A-dependent manner, while circEZH2 suppresses the ubiquitination and degradation of IGF2BP2 by binding to IGF2BP2. Taken together, our findings indicated that circEZH2, upregulated via a positive feedback loop between circEZH2 and IGF2BP2, promotes GBC progression and lipid metabolism reprogramming through the miR-556-5p/SCD1 axis in GBC. circEZH2 may serve as a potential therapeutic target for GBC.
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  • 文章类型: Journal Article
    了解癌症免疫监视的机制对于精准医学和有效的免疫治疗至关重要。我们在这里报道ZNF408,由与家族性渗出性玻璃体视网膜病变(FEVR)和常染色体隐性遗传性色素性视网膜炎(RP)相关的基因编码,与SETD1A/COMPASS复合物介导乳腺癌细胞中组蛋白H3赖氨酸4(H3K4)甲基化相关。整合的表观基因组和转录组分析显示,ZNF408和SETD1A共享重叠的染色质景观,并协调激活一组基因,其中STING1在先天免疫反应中至关重要。ZNF408-SETD1A复合物在体外和体内增强STING1表达并促进STING介导的抗肿瘤免疫应答。重要的是,ZNF408的表达与STING1的表达呈正相关,与乳腺癌的组织学分级呈负相关。我们的研究揭示了ZNF408在癌症免疫监视中的作用,支持ZNF408-SETD1A-STING1轴在乳腺癌发生和其他ZNF408相关疾病(包括FEVR和RP)中的治疗靶向性研究。
    Understanding the mechanism of cancer immune surveillance is crucial for precision medicine and effective immunotherapy. We report here that ZNF408, encoded by a gene linked to familial exudative vitreoretinopathy (FEVR) and autosomal recessive retinitis pigmentosa (RP), is physically associated with the SETD1A/COMPASS complex mediating histone H3 lysine 4 (H3K4) methylation in breast cancer cells. Integrative epigenomic and transcriptomic analyses reveal that ZNF408 and SETD1A share overlapped chromatin landscape and coordinately activate a cohort of genes, among which STING1 is critical in innate immune responses. ZNF408-SETD1A complex enhances STING1 expression and promotes STING-mediated anti-tumor immune responses both in vitro and in vivo. Importantly, ZNF408 expression is positively correlated with that of STING1 and negatively correlated with the histological grade of breast cancer. Our study uncovers a role for ZNF408 in cancer immune surveillance, supporting further investigations for therapeutic targeting of ZNF408-SETD1A-STING1 axis in breast carcinogenesis and other ZNF408-associated diseases including FEVR and RP.
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  • 文章类型: Journal Article
    PU.1(SPI1)在造血中至关重要,然而,其在人内皮-造血细胞转化(EHT)中的作用尚不清楚.比较人体内和体外EHT转录组揭示了SPI1的调节作用。在体外EHT过程中敲除SPI1导致造血祖细胞(HPCs)的生成及其分化潜力降低。通过多元分析,我们鉴定了KLF1和LYL1-红细胞/骨髓和淋巴样细胞特异性转录因子,分别作为SPI1的下游目标。过表达KLF1或LYL1部分挽救了SPI1敲低诱导的HPC形成减少。具体来说,KLF1过表达可恢复髓系潜能,而LYL1过表达重新建立淋巴谱系潜能。我们还在体内EHT的调节网络中观察到SPI1-LYL1轴。一起来看,我们的发现为SPI1在EHT期间调节谱系承诺的作用提供了新的思路,可能导致造血干细胞(HSC)的异质性。
    PU.1 (SPI1) is pivotal in hematopoiesis, yet its role in human endothelial-to-hematopoietic transition (EHT) remains unclear. Comparing human in vivo and in vitro EHT transcriptomes revealed SPI1\'s regulatory role. Knocking down SPI1 during in vitro EHT led to a decrease in the generation of hematopoietic progenitor cells (HPCs) and their differentiation potential. Through multi-omic analysis, we identified KLF1 and LYL1 - transcription factors specific to erythroid/myeloid and lymphoid cells, respectively - as downstream targets of SPI1. Overexpressing KLF1 or LYL1 partially rescues the SPI1 knockdown-induced reduction in HPC formation. Specifically, KLF1 overexpression restores myeloid lineage potential, while LYL1 overexpression re-establishes lymphoid lineage potential. We also observed a SPI1-LYL1 axis in the regulatory network in in vivo EHT. Taken together, our findings shed new light on the role of SPI1 in regulating lineage commitment during EHT, potentially contributing to the heterogeneity of hematopoietic stem cells (HSCs).
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  • 文章类型: Journal Article
    细胞功能基于肌动蛋白丝的完整性。肌动蛋白细胞骨架通常是靶标,也是信号的来源。拟南芥PRL1(多效调节基因座1),调节多种细胞过程和生理反应。然而,PRL1多种功能的确切机制尚不清楚.这里,我们显示PRL1维持肌动蛋白完整性和伴随的细胞稳态。prl1突变体中皮质肌动蛋白细胞骨架解聚,导致发育根缺陷。肌动蛋白解聚,而不是活性氧(ROS)失衡,构成了prl1根系生长迟缓的根本原因。ANAC085上调,和合作,肌动蛋白解聚引发prl1根中的石碑细胞死亡。由肌动蛋白解聚导致的差异基因表达和可变剪接缺陷独立发生在prl1中。我们的工作建立了肌动蛋白解聚和下游应激相关信号之间的因果关系,揭示了PRL1的新功能,增强了对PRL功能机制的理解。
    Cell functions are based on the integrity of actin filaments. The actin cytoskeleton is typically the target but also the source of signals. Arabidopsis PRL1 (Pleiotropic Regulatory Locus 1), regulates multiple cellular processes and physiological responses. However, the precise mechanisms underlying PRL1`s multiple functions are unclear. Here, we show that PRL1 maintains actin integrity and concomitant cellular homeostasis. The cortical actin cytoskeleton was de-polymerized in the prl1 mutant, causing the developmental root defect. Actin depolymerization, rather than reactive oxygen species (ROS) imbalance, constituted the fundamental cause of retarded root growth in prl1. ANAC085 upregulation by, and cooperation with, actin depolymerization triggered stele cell death in prl1 roots. Differential gene expression and alternative splicing defects resulting from actin depolymerization occurred independently in prl1. Our work establishes the cause-effect relationships between actin depolymerization and downstream stress-related signals, revealing a novel function of PRL1 and enhancing the understanding of PRL`s functional mechanisms.
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