Binding

绑定
  • 文章类型: Journal Article
    钩端螺旋体病是世界范围内一种重要的人畜共患病,疾病严重程度从轻度非特异性疾病到多器官功能障碍和出血。该病是由钩端螺旋体属的病原菌引起的,分为致病性和腐生进化枝。细菌与宿主分子和细胞结合,由粘附素蛋白协调,是发病机制的重要步骤。虽然已经发现了许多钩端螺旋体粘附素,绝大多数尚未在体内进行表征。在这里,我们概述了当前在钩端螺旋体中识别粘附素的方法和成功,包括体内已知的生物学作用。我们还将确定和讨论未来研究的潜在领域。
    Leptospirosis is a significant zoonosis worldwide, with disease severity ranging from a mild non-specific illness to multi-organ dysfunction and hemorrhage. The disease is caused by pathogenic bacteria of the genus Leptospira, which are classified into pathogenic and saprophytic clades. Bacterial binding to host molecules and cells, coordinated by adhesin proteins, is an important step in pathogenesis. While many leptospiral adhesins have been identified, the vast majority have not been characterized in vivo. Herein, we present an overview of the current methodologies and successes in identifying adhesins in Leptospira, including known biological roles in vivo. We will also identify and discuss potential areas for future research.
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  • 文章类型: Journal Article
    模块化纳米转运蛋白(MNT)是用于靶向癌症治疗的药物递送系统。由于MNT由几个模块组成,它们在将药物递送到癌细胞的靶区室方面提供了高特异性和生物相容性的优势。大型载体模块将起作用的MNT模块聚集在一起,并用作药物附着的平台。通过载体模块的截断来开发较小尺寸的MNT似乎有利于促进组织穿透。在这项研究中,通过基因工程开发了两个新的MNT,它们具有包含N末端(MNTN)或C末端(MNTC)部分的截短载体模块。两种新的MNT都表现出对靶受体的高亲和力,如通过荧光标记的配体竞争结合所揭示的。脂质体渗漏试验证明了MNTs的胞内溶解活性。通过热电泳测定法揭示了与每个截短的MNT的输入蛋白异二聚体的结合,而只有MNTN具有与Keap1的结合。最后,与MNTN连接的光敏剂的光动力功效显着高于与MNTC或原始MNT连接的光敏剂。因此,这项工作揭示了MNT的载波模块可以被截断而不会丢失MNT功能,由于其结合Keap1的能力,有利于载体模块的N端部分。
    Modular nanotransporters (MNTs) are drug delivery systems for targeted cancer treatment. As MNTs are composed of several modules, they offer the advantage of high specificity and biocompatibility in delivering drugs to the target compartment of cancer cells. The large carrier module brings together functioning MNT modules and serves as a platform for drug attachment. The development of smaller-sized MNTs via truncation of the carrier module appears advantageous in facilitating tissue penetration. In this study, two new MNTs with a truncated carrier module containing either an N-terminal (MNTN) or a C-terminal (MNTC) part were developed by genetic engineering. Both new MNTs demonstrated a high affinity for target receptors, as revealed by fluorescent-labeled ligand-competitive binding. The liposome leakage assay proved the endosomolytic activity of MNTs. Binding to the importin heterodimer of each truncated MNT was revealed by a thermophoresis assay, while only MNTN possessed binding to Keap1. Finally, the photodynamic efficacy of the photosensitizer attached to MNTN was significantly higher than when attached to either MNTC or the original MNTs. Thus, this work reveals that MNT\'s carrier module can be truncated without losing MNT functionality, favoring the N-terminal part of the carrier module due to its ability to bind Keap1.
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  • 文章类型: Journal Article
    有选择地记住更有价值的信息可以提高记忆效率。这种价值效应已经在项目颜色结合的长期记忆中观察到,但可能的促成因素尚不清楚。本研究探讨了注意力(实验1)和口头排练(实验2)的贡献。在两个实验中,对于与编码时的高(相对于低)点值相关的项目颜色绑定,在立即测试和延迟重新测试中。当编码期间注意力资源的可用性降低时,值仅影响即时记忆,而不影响延迟记忆(实验1)。这表明,用很少的注意力资源就可以获得瞬态值效应,但是注意力资源参与创造更持久的效果。当在编码期间实施关节抑制时(实验2),价值效应在即时测试中有所降低,在延迟重新测试中有所取消,建议口头排练对项目颜色结合记忆的价值影响。这些价值效应模式不与编码表示格式(即,顺序与同时呈现对象)。一起,这些结果表明,注意资源和口头排练都有助于对项目颜色结合记忆的价值效应,对这些效果的耐久性有不同的影响。
    Selectively remembering more valuable information can improve memory efficiency. Such value effects have been observed on long-term memory for item-colour binding, but the possible contributory factors are unclear. The current study explored contributions from attention (Experiment 1) and verbal rehearsal (Experiment 2). Across two experiments, memory was superior for item-colour bindings that were associated with high (relative to low) point values at encoding, both in an immediate test and a delayed re-test. When availability of attentional resources was reduced during encoding, value only influenced immediate and not delayed memory (Experiment 1). This indicates that a transient value effect can be obtained with little attentional resources, but attentional resources are involved in creating a longer lasting effect. When articulatory suppression was implemented during encoding (Experiment 2), value effects were somewhat reduced in the immediate test and abolished in the delayed re-test, suggesting a role for verbal rehearsal in value effects on item-colour binding memory. These patterns of value effects did not interact with encoding presentation format (i.e., sequential vs. simultaneous presentation of objects). Together, these results suggest that attentional resources and verbal rehearsal both contribute to value effects on item-colour binding memory, with varying impacts on the durability of these effects.
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  • 文章类型: Journal Article
    特征绑定是整合特征的过程,如颜色和形状,转换为对象表示形式。文献中关于特征绑定是自动还是资源需求过程的持续问题可能取决于单元化,也就是说,要绑定的信息是内在的(属于的)还是外在的(上下文的)。鉴于大量证据表明,东方人可能比西方人更全面地处理信息,这种文化差异可能有助于理解视觉工作记忆(WM)中特征绑定的基本过程。因此,我们招募了英国和中国的参与者来完成一项视觉WM任务,其中整合了要记住的颜色(即,内在结合)或作为背景(即,外部结合)要记住的形状(实验1和2)。实验2进一步研究了先验知识在长期记忆中的作用,以促进WM中的特征绑定。在检索过程中,参与者在三个探测器中决定:一个目标,诱饵(即,所呈现特征的重组),和新的颜色/形状。将分层贝叶斯多项处理树模型拟合到数据,以估计表示绑定和项目记忆的参数。目前的结果表明,内在和外在结合记忆在两个文化群体之间是相似的,对于任何一个文化群体的内在或外在结合都没有先验知识的好处。此结果与分析和整体框架相冲突,并表明在功能绑定方面没有文化差异或先验知识优势。
    Feature binding is the process of integrating features, such as colour and shape, into object representations. A persistent question in the literature concerning whether feature binding is an automatic or resource-demanding process may depend on unitisation, that is, whether the to-be-bound information is intrinsic (belonging to) or extrinsic (contextual). Given extensive evidence showing that Easterners may process information more holistically than Westerners, such cultural differences may be useful to understand the fundamental processes of feature binding in visual working memory (WM). Accordingly, we recruited British and Chinese participants to complete a visual WM task wherein to-be-remembered colours were integrated within (i.e., intrinsic binding) or as backgrounds (i.e., extrinsic binding) of to-be-remembered shapes (Experiments 1 and 2). Experiment 2 further investigated the role of prior knowledge in long-term memory to facilitate feature binding in WM. During retrieval, participants decided among three probes: a target, a lure (i.e., recombination of the presented features), and a new colour/shape. Hierarchical Bayesian multinomial processing tree models were fit to the data to estimate parameters representing binding and item memory. The current results suggest that intrinsic and extrinsic binding memory are similar between the two cultural groups, with no prior knowledge benefits for either intrinsic or extrinsic binding for either cultural group. This result conflicts with the Analytic and Holistic framework and suggests that there are no cultural differences or prior knowledge benefits in feature binding.
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  • 文章类型: Journal Article
    表皮生长因子受体(EGFR)是一种跨膜酪氨酸激酶,通常通过翻译后糖基化进行修饰。在癌症中,在很大一部分非小细胞肺癌和乳腺腺癌中检测到EGFR扩增和促进增殖的热点突变如L858R。分子动力学模拟表明,天冬酰胺残基361(N361)处的糖基化促进二聚化和配体结合。我们稳定表达糖基化缺陷突变EGFRN361A,有或没有致癌突变L858R。免疫荧光和流式细胞术证明突变体各自在细胞膜上良好表达。相对于野生型EGFR,N361A降低增殖以及对配体的敏感性降低。测量EGFR与其结合配偶体HER2在细胞中的共定位的邻近连接测定揭示N361A突变增加共定位。N361A,位于EGFR抑制剂necitumumab的结合界面附近,表达致癌EGFRL858R的脱敏细胞对基于抗体的抑制。这些发现强调了翻译后修饰对癌基因功能的关键相关性。
    结论:EGFR将生长因子的信号传导到细胞增殖中,并且在肿瘤中经常被过度激活。N361的EGFR糖基化调节EGFR二聚化,增殖信号的生长因子刺激,和对靶向抑制的敏感性。对EGFR糖基化的见解可能会扩大治疗机会,使癌症患者受益。
    Epidermal growth factor receptor (EGFR) is a transmembrane tyrosine kinase that is frequently modified by glycosylation post-translationally. In cancer, EGFR amplifications and hotspot mutations such as L858R that promote proliferation have been detected in a significant fraction of non-small cell lung carcinomas and breast adenocarcinomas. Molecular dynamic simulations suggested that glycosylation at asparagine residue 361 (N361) promotes dimerization and ligand binding. We stably expressed glycosylation-deficient mutant EGFR N361A, with or without the oncogenic mutation L858R. Immunofluorescence and flow cytometry demonstrated that the mutants were each well expressed at the cell membrane. N361A decreased proliferation relative to wild-type EGFR as well as decreased sensitivity to ligands. Proximity ligation assays measuring co-localization of EGFR with its binding partner HER2 in cells revealed that N361A mutations increased co-localization. N361A, located near the binding interface for the EGFR inhibitor necitumumab, desensitized cells expressing the oncogenic EGFR L858R to antibody-based inhibition. These findings underline the critical relevance of post-translational modifications on oncogene function.
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  • 文章类型: Journal Article
    中东呼吸综合征冠状病毒(MERS-CoV)于2012年首次出现,并在流行地区引起人类感染。针对MERS-CoV开发的疫苗和治疗剂集中于刺突(S)糖蛋白以防止病毒进入靶细胞。这些努力受限于对感染引起的抗体应答的理解不足。这里,我们分析了MERS-CoV感染者血浆中的S-导向抗体反应.我们观察到,结合和中和抗体在症状发作/住院后1-6周达到峰值,坚持至少6个月,并中和人类和骆驼MERS-CoV菌株。我们表明MERS-CoVS1亚基是免疫显性的,并且靶向S1的抗体,特别是受体结合域(RBD),占大多数血浆中和活性。抗原位点定位显示血浆抗体经常靶向RBD表位,而S2亚基表位的靶向是罕见的。我们的数据揭示了MERS-CoV感染引起的体液免疫反应,这将指导疫苗和治疗设计。
    Middle East respiratory syndrome coronavirus (MERS-CoV) first emerged in 2012 and causes human infections in endemic regions. Vaccines and therapeutics in development against MERS-CoV focus on the spike (S) glycoprotein to prevent viral entry into target cells. These efforts are limited by a poor understanding of antibody responses elicited by infection. Here, we analyze S-directed antibody responses in plasma collected from MERS-CoV-infected individuals. We observe that binding and neutralizing antibodies peak 1-6 weeks after symptom onset/hospitalization, persist for at least 6 months, and neutralize human and camel MERS-CoV strains. We show that the MERS-CoV S1 subunit is immunodominant and that antibodies targeting S1, particularly the receptor-binding domain (RBD), account for most plasma neutralizing activity. Antigenic site mapping reveals that plasma antibodies frequently target RBD epitopes, whereas targeting of S2 subunit epitopes is rare. Our data reveal the humoral immune responses elicited by MERS-CoV infection, which will guide vaccine and therapeutic design.
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  • 文章类型: Journal Article
    目的:目前可用于在胞浆内单精子注射(ICSI)之前利用透明质酸(HA)结合进行精子选择的商业产品被广泛使用,但具有一些缺点。为了潜在地规避这些限制,我们将使用自制透明质酸(smHA)试剂的ICSI与使用SpermSlow的ICSI进行了比较。
    方法:使用密度梯度离心和向上游动程序(N=10/组)分离的精子,对试剂与塑料或玻璃底盘上精子的结合进行定量。此外,我们调查了ICSI前使用的HA试剂与HA-ICSI辅助生殖后的临床结局之间的关系(N=81).
    结果:smHA试剂表现出与人精子极其稳定的结合。在塑料和玻璃皿上,smHA试剂中精子的结合时间明显长于SpermSlow(塑料:60.0±0.0minvs.2.7±5.9min,P<0.001;玻璃:60.0±0.0minvs.2.5±1.8min,P<0.001)。用smHA试剂的HA-ICSI(128/160,80.0%)和用SpermSlow的HA-ICSI(171/231,74.0%,P=0.184)。使用smHA试剂(74/101,73.3%)的HA-ICSI衍生的受精卵的胚泡发育频率明显高于SpermSlow(76/131,58.0%,P=0.019)。生化妊娠率,临床妊娠,胎心运动,活产,使用smHA试剂的HA-ICSI和使用SpermSlow的HA-ICSI之间的流产没有显着差异。
    结论:与SpermSlow相比,使用smHA试剂的HA-ICSI的囊胚形成率更高。临床结果,不包括囊胚形成,HA-ICSI后使用smHA试剂和使用SpermSlow相同。精子与smHA试剂的结合在60分钟的时间过程中没有减弱。总之,该试剂可以缩短和简化HA-ICSI程序,因为smHA可以与任何培养皿材料一起使用,更容易观察纺锤体或评估胞浆内形态。
    OBJECTIVE: Commercial products currently available for sperm selection utilizing hyaluronic acid (HA) binding prior to intracytoplasmic sperm injection (ICSI) are widely used but have some disadvantages. To potentially circumvent these limitations, we compared ICSI using a self-made hyaluronic acid (smHA) reagent with ICSI using SpermSlow.
    METHODS: The binding of the reagents to spermatozoa on plastic- or glass-bottom dishes was quantitated using spermatozoa that were isolated by density-gradient centrifugation and swim-up procedures (N = 10/group). Additionally, we investigated the relationship between the HA reagent used prior to ICSI and clinical outcomes after assisted reproduction with HA-ICSI (N = 81).
    RESULTS: The smHA reagent exhibited extremely stable binding to human spermatozoa. The binding time of spermatozoa was significantly longer in the smHA reagent than in SpermSlow on both plastic and glass dishes (plastic: 60.0 ± 0.0 min vs. 2.7 ± 5.9 min, P < 0.001; glass: 60.0 ± 0.0 min vs. 2.5 ± 1.8 min, P < 0.001). There were no significant differences in the normal fertilization rate between HA-ICSI with the smHA reagent (128/160, 80.0%) and HA-ICSI with SpermSlow (171/231, 74.0%, P = 0.184). The frequency of the blastocyst development from the HA-ICSI-derived zygote was significantly higher with the smHA reagent (74/101, 73.3%) than with SpermSlow (76/131, 58.0%, P = 0.019). The rates of biochemical pregnancy, clinical pregnancy, fetal heart movement, live birth, and miscarriage were not significantly different between HA-ICSI with the smHA reagent and HA-ICSI with SpermSlow.
    CONCLUSIONS: The blastulation rate was higher for HA-ICSI with the smHA reagent as compared with SpermSlow. Clinical outcomes, excluding blastulation, after HA-ICSI were the same using smHA reagent and using SpermSlow. Spermatozoa binding to the smHA reagent was not attenuated over a 60-min time course. In conclusion, this reagent may shorten and simplify HA-ICSI procedures because smHA can be used with any dish material, making it easier to observe the spindle or assess intracytoplasmic morphology.
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  • 文章类型: Journal Article
    了解在存在硅粉的情况下,化学掺合料的聚(羧酸盐)如何与水泥孔溶液中的钙离子相互作用,对于开发用于混凝土生产的更好的化学掺合料至关重要。在这项工作中,在硅灰存在下,通过经典的全原子分子动力学(MD)模拟和密度泛函理论(DFT)计算方法研究了钙离子与聚(羧酸)超增塑剂类型的化学混合物的分子间相互作用。经典的全原子MD模拟和DFT计算结果表明,钙离子与PCE羧酸根的氧原子相互作用。更好的相互作用能可能意味着改善了PCE片段对钙离子的吸附。在这方面,可以注意到,与基于醚的PCE区段相比,基于酯的PCE区段可以具有更好的对钙离子的吸附。此外,二氧化硅的存在可以改善PCE片段在钙离子上的吸附。
    Understanding how poly(carboxylate)s of chemical admixtures interact with calcium ions in cement pore solutions in the presence of silica fume is fundamental to developing better chemical admixtures for concrete production. In this work, the intermolecular interactions of calcium ions with a poly(carboxylate) superplasticizer type of chemical admixture was investigated via classical all-atom molecular dynamics (MD) simulations and Density Functional Theory (DFT) calculation methods in the presence of silica fume. The classical all-atom MD simulation and DFT calculation results indicate that calcium ions are interacting with oxygen atoms of the carboxylate group of PCE. The better interaction energy could mean an improved adsorption of the PCE segment with calcium ions. In this regard, it can be noted that the ester-based PCE segment could have a better adsorption onto calcium ions in comparison with the ether-based PCE segment. Moreover, the presence of silicon dioxide could improve the adsorption of the PCE segment onto calcium ions.
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  • 文章类型: Journal Article
    赖氨酸是蛋白质表面上最丰富的残基之一,其位点选择性官能化极具挑战性。现有的功能化方法依赖于赖氨酸对蛋白质的差异反应性,使得不可能选择性地标记反应性较低的赖氨酸。我们在这里报道了模拟蛋白质翻译后修饰中涉及的酶的聚合物纳米颗粒,这些酶可以区分赖氨酸的化学和超分子环境,并将标记试剂精确地传递到其ε氨基。通过可交联表面活性剂胶束的分子印迹制备纳米粒子,加上一个原位,在压印之前肽模板的胶束上衍生化。这些程序对聚合物纳米颗粒进行编码,具有序列识别和精确标记所需的所有超分子信息,允许在混合物中的靶蛋白上的预定赖氨酸的单位点官能化。
    Lysine is one of the most abundant residues on the surface of proteins and its site-selective functionalization is extremely challenging. The existing methods of functionalization rely on differential reactivities of lysine on a protein, making it impossible to label less reactive lysines selectively. We here report polymeric nanoparticles that mimic enzymes involved in the posttranslational modifications of proteins that distinguish the chemical and supramolecular contexts of a lysine and deliver the labeling reagent precisely to its ε amino group. The nanoparticles are prepared through molecular imprinting of cross-linkable surfactant micelles, plus an in situ, on-micelle derivatization of the peptide template prior to the imprinting. The procedures encode the polymeric nanoparticles with all the supramolecular information needed for sequence identification and precise labeling, allowing single-site functionalization of a predetermined lysine on the target protein in a mixture.
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  • 文章类型: Journal Article
    存在于基因组序列的启动子和端粒区域中的G-四链体DNA序列被认为是用于治疗癌症的治疗靶标。姜黄素,来源于姜黄,已被称为四链体结合剂,在癌细胞的凋亡中具有潜在的作用。这里,我们已经报道了通过氨基酸L-色氨酸和姜黄素的knoevenagel衍生物(4-硝基亚苄基姜黄素(NBC))缩合合成的姜黄素的席夫碱配体作为潜在的G-四链体结合剂。因此,光谱和生物物理研究表明,与亲本NBC相比,配体Sb-NBC对启动子和端粒G-四链体序列的结合亲和力更高。配体Sb-NBC将平行和混合G-四链体拓扑高度稳定至10.5°C-6.4°C。有趣的是,与正常细胞相比,配体还表现出对癌细胞的选择性细胞毒性。一起来看,这项工作提供了在癌症治疗中应用姜黄素席夫碱调节癌细胞癌基因表达的可能性的证据.
    G-quadruplex DNA sequences present in the promoter and telomere regions of the genomic sequence are considered therapeutic targets for the treatment of cancer. Curcumin, derived from Curcuma longa, has been known as a quadruplex binder and has a potential role in the apoptosis of cancer cells. Here, we have reported the Schiff base ligand of curcumin synthesized through the condensation of the amino acid L-tryptophan and the knoevenagel derivative of curcumin (4-nitrobenzylidene curcumin (NBC)) as a potential G-quadruplex binder. Thus, spectroscopic and biophysical studies reveal a higher binding affinity of the ligand Sb-NBC towards the promoter and telomere G-quadruplex sequence as compared to the parent NBC. The ligand Sb-NBC highly stabilizes the parallel and hybrid G-quadruplex topologies to 10.5 0C- 6.4 0C. Interestingly, the ligands also exhibit selective cytotoxicity toward cancer cells over normal cells. Taken together, this work provides evidence of the possibility of applying curcumin Schiff base in cancer therapy to regulate oncogene expression in cancer cells.
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