Bidirectional two-sample mendelian randomization

  • 文章类型: Journal Article
    观察性研究表明端粒长度(TL)和血脂(BL)水平之间存在关联。然而,这两个特征之间的因果关系尚不清楚.我们旨在通过孟德尔随机化(MR)阐明遗传预测的TL是否与BL水平相关,反之亦然。
    我们获得了与TL,甘油三酯(TG),低密度脂蛋白胆固醇(LDL-C),高密度脂蛋白胆固醇(HDL-C),来自大规模全基因组关联研究(GWAS)的载脂蛋白A-1(ApoA-1)和载脂蛋白B(ApoB)。通过双向MR研究了TL和BL之间的因果关系,多变量MR和中介分析方法。采用逆方差加权(IVW)方法作为主要方法,辅之以其他几个估计器,以增强分析的稳健性。
    在正向MR分析中,我们确定了遗传预测的TL与TG水平之间的显着正相关(β=0.04,95%置信区间[CI]:0.01至0.06,p=0.003)。在反向MR分析中,TG(β=0.02,95%CI:0.01至0.03,p=0.004),LDL-C(β=0.03,95%CI:0.01~0.04,p=0.001)和ApoB(β=0.03,95%CI:0.01~0.04,p=9.71×10-5)与TL呈显著正相关,尽管在多变量MR分析中未观察到这种关系。通过两步MR进行的调解分析显示,在TG和TL的分析中,肥胖相关表型没有明显的调解作用,而LDL-C对TL的影响部分由体重指数(BMI)反向介导,介导比例为12.83%(95%CI:0.62%至25.04%)。
    我们的研究表明,较长的TL与较高的TG水平相关,而反过来,较高的TG,LDL-C,ApoB水平预测了更长的TL,BMI部分介导了这些影响。我们的发现为制定专门针对TL相关衰老和年龄相关疾病的预防策略和干预措施提供了宝贵的见解。
    UNASSIGNED: Observational studies suggest an association between telomere length (TL) and blood lipid (BL) levels. Nevertheless, the causal connections between these two traits remain unclear. We aimed to elucidate whether genetically predicted TL is associated with BL levels via Mendelian randomization (MR) and vice versa.
    UNASSIGNED: We obtained genetic instruments associated with TL, triglycerides (TG), low-density lipoprotein cholesterol (LDL-C), high-density lipoprotein cholesterol (HDL-C), apolipoprotein A-1 (ApoA-1) and apolipoprotein B (ApoB) from large-scale genome-wide association studies (GWASs). The causal relationships between TL and BL were investigated via bidirectional MR, multivariable MR and mediation analysis methods. The inverse variance weighted (IVW) method was employed as the principal methodology, complemented by several other estimators to enhance the robustness of the analysis.
    UNASSIGNED: In the forward MR analyses, we identified significant positive correlation between genetically predicted TL and the levels of TG (β=0.04, 95% confidence interval [CI]: 0.01 to 0.06, p = 0.003). In the reverse MR analysis, TG (β=0.02, 95% CI: 0.01 to 0.03, p = 0.004), LDL-C (β=0.03, 95% CI: 0.01 to 0.04, p = 0.001) and ApoB (β=0.03, 95% CI: 0.01 to 0.04, p = 9.71×10-5) were significantly positively associated with TL, although this relationship was not observed in the multivariate MR analysis. The mediation analysis via two-step MR showed no significant mediation effects acting through obesity-related phenotypes in analysis of TL with TG, while the effect of LDL-C on TL was partially mediated by body mass index (BMI) in the reverse direction, with mediated proportion of 12.83% (95% CI: 0.62% to 25.04%).
    UNASSIGNED: Our study indicated that longer TL were associated with higher TG levels, while conversely, higher TG, LDL-C, and ApoB levels predicted longer TL, with BMI partially mediating these effects. Our findings present valuable insights into the development of preventive strategies and interventions that specifically target TL-related aging and age-related diseases.
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  • 文章类型: Journal Article
    背景:大脑静息状态网络被认为与抑郁症密切相关。然而,脑网络与抑郁障碍之间的因果关系仍存在争议.在这项研究中,我们旨在通过双向孟德尔随机化(MR)设计,研究静息态网络对抑郁障碍的影响.
    方法:更新的与静息态网络相关的汇总水平全基因组关联研究(GWAS)数据来自复杂性状遗传学实验室对欧洲裔GWAS的荟萃分析。抑郁症相关的GWAS数据来自FinnGen研究,涉及具有欧洲血统的参与者。进行了大脑的静息状态功能磁共振成像和多波段扩散成像,以测量七个众所周知的网络中的功能和结构连通性。方差反加权被用作主要估计,而MR-Pleiothypeotropival和异常值(PRESSO),MR-Egger,加权中位数用于检测异质性,灵敏度,和多功能性。
    结果:总计,分析了来自48,847名患者和225,483名对照的20,928个功能和20,573个结构连接数据以及与抑郁相关的GWAS数据。在逆方差加权边缘网络(优势比,[公式:见正文];95%置信区间,[公式:见文本];[公式:见文本]),而未发现抑郁障碍对SCLN的因果影响(OR=1.0025;CI,1.0005-1.0046;P=0.012)。在这项MR研究中,没有发现静息状态网络的功能连通性与抑郁症之间的显着关联。
    结论:这些结果表明,遗传决定的边缘网络的结构连通性对抑郁症具有因果效应,并且可能在其神经病理学中起关键作用。
    BACKGROUND: Cerebral resting-state networks were suggested to be strongly associated with depressive disorders. However, the causal relationship between cerebral networks and depressive disorders remains controversial. In this study, we aimed to investigate the effect of resting-state networks on depressive disorders using a bidirectional Mendelian randomization (MR) design.
    METHODS: Updated summary-level genome-wide association study (GWAS) data correlated with resting-state networks were obtained from a meta-analysis of European-descent GWAS from the Complex Trait Genetics Lab. Depression-related GWAS data were obtained from the FinnGen study involving participants with European ancestry. Resting-state functional magnetic resonance imaging and multiband diffusion imaging of the brain were performed to measure functional and structural connectivity in seven well-known networks. Inverse-variance weighting was used as the primary estimate, whereas the MR-Pleiotropy RESidual Sum and Outliers (PRESSO), MR-Egger, and weighted median were used to detect heterogeneity, sensitivity, and pleiotropy.
    RESULTS: In total, 20,928 functional and 20,573 structural connectivity data as well as depression-related GWAS data from 48,847 patients and 225,483 controls were analyzed. Evidence for a causal effect of the structural limbic network on depressive disorders was found in the inverse variance-weighted limbic network (odds ratio, [Formula: see text]; 95% confidence interval, [Formula: see text]; [Formula: see text]), whereas the causal effect of depressive disorders on SC LN was not found(OR=1.0025; CI,1.0005-1.0046; P=0.012). No significant associations between functional connectivity of the resting-state networks and depressive disorders were found in this MR study.
    CONCLUSIONS: These results suggest that genetically determined structural connectivity of the limbic network has a causal effect on depressive disorders and may play a critical role in its neuropathology.
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  • 文章类型: Journal Article
    线粒体DNA(mtDNA)拷贝数和端粒长度(TL)是与生物体衰老过程相关的动态因素。然而,这些变量之间的因果关系仍然不确定。在这项研究中,与mtDNA拷贝数和TL相关的工具变量(IVs)来自公开的全基因组关联研究(GWAS).通过双向孟德尔随机化(MR)分析,我们研究了这些因素之间的潜在因果关系.前瞻性分析,以mtDNA拷贝数作为暴露量,TL作为结果,没有显现出显著的效果(B=-0.004,P>0.05)。相反,在进行反向分析后,结果发现存在正的因果关系(B=0.054,P<0.05)。敏感性分析进一步证实了这些结果的可靠性。这项研究的结果表明了一种单向的正因果关系,表明老化过程中端粒缩短可能导致mtDNA拷贝数减少,为其生物学机制提供新的视角。
    Mitochondrial DNA (mtDNA) copy number and telomere length (TL) are dynamic factors that have been linked to the aging process in organisms. However, the causal relationship between these variables remains uncertain. In this research, instrumental variables (IVs) related to mtDNA copy number and TL were obtained from publicly available genome-wide association studies (GWAS). Through bidirectional Mendelian randomization (MR) analysis, we examined the potential causal relationship between these factors. The forward analysis, with mtDNA copy number as the exposure and TL as the outcome, did not reveal a significant effect (B=-0.004, P>0.05). On the contrary, upon conducting a reverse analysis, it was found that there exists a positive causal relationship (B=0.054, P<0.05). Sensitivity analyses further confirmed the reliability of these results. The outcomes of this study indicate a one-way positive causal relationship, indicating that telomere shortening in the aging process may lead to a decrease in mtDNA copy number, providing new perspectives on their biological mechanisms.
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  • 文章类型: Journal Article
    传统的观察性研究表明,严重的COVID-19与慢性肾脏疾病(CKD)之间存在关联。目前尚不清楚它们之间是否存在因果关系。我们的目标是确定基因预测的CKD是否与关键COVID-19的风险相关。我们的目的是研究解释这种关系的潜在潜在遗传机制,为个性化风险评估和针对性干预措施铺平道路,以减轻COVID-19对CKD患者的影响。使用来自GWAS的欧洲血统和CKD(n=117,165)和关键COVID-19(n=1,059,456)的组合数据,我们进行了双向孟德尔随机化分析.从基因组中选择四种单核苷酸多态性(SNP)作为CKD工具变量(IVs)。除了MR-Egger回归,加权模式方法,和加权中位数,我们采用逆方差加权估计作为我们的主要分析方法。发现CKD与临界COVID-19显著相关(OR=1.28,95%置信区间[CI]:1.04-1.58,p=0.01811)。然而,使用6个全基因组显著SNP作为关键COVID-19的IVs,我们无法发现严重COVID-19与CKD之间存在有意义的相关性(OR=1.03,95%CI:0.96-1.10,p=0.3947)。我们发现证据支持欧洲人群中CKD与严重COVID-19之间的因果关系。这凸显了对CKD患者进行全面监测和专门护理策略的必要性,以减轻COVID-19并发症的高风险和严重程度。
    Traditional observational research has revealed an association between severe COVID-19 and chronic kidney disease (CKD). It is unclear whether there is a causative connection between them. Our goal was to determine whether genetically predicted CKD is associated with the risk of critical COVID-19. We aimed to investigate potential underlying genetic mechanisms that could explain this relationship, paving the way for personalized risk assessment and targeted interventions to mitigate the effects of COVID-19 on individuals with CKD. Using combined data from a GWAS on European ancestry and CKD (n = 117,165) and critical COVID-19 (n = 1,059,456), bidirectional Mendelian randomization analysis was performed. Four single nucleotide polymorphisms (SNPs) were chosen from the genome as CKD instrumental variables (IVs). In addition to MR‒Egger regression, weighted mode approaches, and weighted medians, we employed the inverse-variance weighted estimate as our primary analytical method. A significant association of CKD with critical COVID-19 (OR = 1.28, 95% confidence interval [CI]: 1.04-1.58, p = 0.01811) was found. However, using 6 genome-wide significant SNPs as IVs for critical COVID-19, we could not discover a meaningful correlation between severe COVID-19 and CKD (OR = 1.03, 95% CI: 0.96-1.10, p = 0.3947). We found evidence to support a causal relationship between CKD and severe COVID-19 in European population. This underscores the need for comprehensive monitoring and specialized care strategies for individuals with CKD to mitigate the heightened risk and severity of COVID-19 complications.
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  • 文章类型: Journal Article
    在观察性研究中,2019年冠状病毒病(COVID-19)与心肌炎或心包炎风险密切相关,然而,仍有研究不支持上述结论。观察到的关联是否反映了因果关系需要确认。我们进行了双向孟德尔随机(MR)研究,以评估COVID-19的因果关系,分为三组,即重症COVID-19、住院COVID-19和COVID-19感染,由心肌炎或心包炎测量。
    我们提取了严重COVID-19的全基因组关联统计摘要(病例:13,769,对照:1,072,442),住院COVID-19(病例:32,519,对照:2,062,805),COVID-19感染(病例:122,616,对照:2,475,240),心肌炎(病例1,521,对照191,924),和心包炎(病例979,对照286,109)在欧洲血统的个体中。在全基因组显著性水平上表现出与每个表型显著关联的独立遗传变异体被用作工具变量。因果效应的估计主要使用随机效应逆方差加权法(IVW)进行。此外,其他测试,如MR-Egger截距,MR-PRESSO,Cochran的Q检验,\"离开一个\",和漏斗图进行评估多效性和异质性的程度。
    在IVW和敏感性分析中观察到COVID-19与心肌炎或心包炎的非关联。重症COVID-19与心肌炎无关[比值比(OR),1.00;95%置信区间(CI),0.89-1.12;P=0.99],心包炎(OR=0.90,95%CI,0.78~1.04,P=0.17)。在住院的COVID-19和COVID-19感染中也可以观察到类似的结果。同时,心肌炎或心包炎与COVID-19性状的反向相关性为零。在敏感性分析中,主要结果保持稳定。
    没有证据表明COVID-19与心肌炎或心包炎有独立和因果关系。
    UNASSIGNED: Coronavirus disease 2019 (COVID-19) is strongly associated with myocarditis or pericarditis risk in observational studies, however, there are still studies that do not support the above conclusion. Whether the observed association reflects causation needs to be confirmed. We performed a bidirectional Mendelian randomization (MR) study to assess the causal relationship of COVID-19, which was divided into three groups, namely severe COVID-19, hospitalized COVID-19, and COVID-19 infection, measured by myocarditis or pericarditis.
    UNASSIGNED: We extracted summary genome-wide association statistics for the severe COVID-19 (case: 13,769, control: 1,072,442), hospitalized COVID-19 (case: 32,519, control: 2,062,805), COVID-19 infection (case: 122,616, control: 2,475,240), myocarditis (case 1,521, control 191,924), and pericarditis (case 979, control 286,109) among individuals of European ancestry. Independent genetic variants that exhibited a significant association with each phenotype at the genome-wide level of significance were utilized as instrumental variables. Estimation of the causal effect was mainly performed using the random effects inverse-variance weighted method (IVW). Additionally, other tests such as MR-Egger intercept, MR-PRESSO, Cochran\'s Q-test, \"Leave-one-out\", and funnel plots were conducted to assess the extent of pleiotropy and heterogeneity.
    UNASSIGNED: Non-associations in the IVW and sensitivity analyses were observed for COVID-19 with myocarditis or pericarditis. Severe COVID-19 was not associated with myocarditis [odds ratio (OR), 1.00; 95% confidence interval (CI), 0.89-1.12; P = 0.99], pericarditis (OR = 0.90, 95% CI, 0.78-1.04, P = 0.17). Similar results can be observed in hospitalized COVID-19, and COVID-19 infection. At the same time, null associations were observed for myocarditis or pericarditis with COVID-19 traits in the reverse direction. The main results are kept stable in the sensitivity analysis.
    UNASSIGNED: There is no evidence that COVID-19 is independently and causally associated with myocarditis or pericarditis.
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  • 文章类型: Randomized Controlled Trial
    现有的横断面和回顾性研究无法确定牛皮癣和皮肤黑色素瘤(CM)之间的因果关系。我们试图评估银屑病和CM之间的因果关系。
    我们使用来自以欧洲血统为主的个体的银屑病和CM的全基因组关联研究的汇总统计进行了双向双样本孟德尔随机化分析。孟德尔随机化-Egger回归,方差倒数加权,孟德尔随机化多效性RESidualSum和离群值,加权模式,和加权中位数用于检查银屑病和CM之间的因果关系。
    遗传预测的银屑病是CM的重要危险因素(比值比,1.69;95%置信区间,1.15-2.48;P=0.025)。相比之下,在遗传预测的CM和银屑病之间没有观察到相关性。
    我们的发现证实了遗传预测的牛皮癣的存在会增加CM的风险。增强银屑病患者皮肤黑色素瘤的早期筛查可能会改善临床负担。然而,我们没有找到从CM到牛皮癣的因果关系的证据,因此,需要进一步的研究来阐明CM活性对银屑病的影响。
    Existing cross-sectional and retrospective studies were unable to establish a causal relationship between psoriasis and cutaneous melanoma (CM). We sought to evaluate the causal role between psoriasis and CM.
    We performed a bidirectional two-sample Mendelian randomization analysis using summary statistics from genome-wide association studies of psoriasis and CM among individuals of predominantly European ancestry. Mendelian randomization-Egger regression, inverse variance weighting, Mendelian Randomization Pleiotropy RESidual Sum and Outlier, weighted mode, and weighted median were used to examine the causal effect between psoriasis and CM.
    Genetically predicted psoriasis was a significant risk factor for CM (odds ratio, 1.69; 95% confidence interval, 1.15-2.48; P = 0.025). In contrast, no association was observed between genetically predicted CM and psoriasis.
    Our findings corroborated the existence of genetically predicted psoriasis increases risk of CM. Enhanced early screening of cutaneous melanoma in patients with psoriasis may improve clinical burden. However, we did not find evidence for a causal link from CM to psoriasis, so further studies are required to elucidate the effect of CM activity on psoriasis.
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  • 文章类型: Journal Article
    一些传统的观察性研究表明,COVID-19与白细胞端粒长度(LTL)之间存在关联,生物年龄的生物标志物。然而,两者之间是否存在因果关系尚不清楚.我们的目的是调查基因预测的COVID-19是否与LTL的风险有关,反之亦然。我们使用来自欧洲血统的重症COVID-19(n=1388342)和LTL(n=472174)的全基因组关联研究的汇总统计数据进行了双向孟德尔随机化(MR)研究。随机效应逆方差加权估计方法作为主要方法,其他几种估计方法作为补充方法。使用6个具有全基因组意义的单核苷酸多态性(SNP)作为重症COVID-19的辅助变量,我们没有发现COVID-19与LTL的显著关联(β=0.0075,95%置信区间[CI]:-0.018至0.021,p=0.733)。同样,使用97个具有全基因组意义的SNP作为LTL的工具变量,我们未发现LTL与COVID-19之间存在显著关联(比值比=1.00,95%CI:0.79-1.28,p=0.973).使用MR-Egger回归获得了可比的结果,加权中位数,和加权模式方法。我们没有发现证据支持COVID-19和LTL在任何方向上的因果关系。
    Several traditional observational studies suggested an association between COVID-19 and leukocyte telomere length (LTL), a biomarker for biological age. However, whether there was a causal association between them remained unclear. We aimed to investigate whether genetically predicted COVID-19 is related to the risk of LTL, and vice versa. We performed bidirectional Mendelian randomization (MR) study using summary statistics from the genome-wide association studies of critically ill COVID-19 (n = 1 388 342) and LTL (n = 472 174) of European ancestry. The random-effects inverse-variance weighted estimation method was applied as the primary method with several other estimators as complementary methods. Using six single-nucleotide polymorphisms (SNPs) of genome-wide significance as instrumental variables for critically ill COVID-19, we did not find a significant association of COVID-19 on LTL (β = 0.0075, 95% confidence interval [CI]: -0.018 to 0.021, p = 0.733). Likewise, using 97 SNPs of genome-wide significance as instrumental variables for LTL, we did not find a significant association of LTL on COVID-19 (odds ratio = 1.00, 95% CI: 0.79-1.28, p = 0.973). Comparable results were obtained using MR-Egger regression, weighted median, and weighted mode approaches. We did not find evidence to support a causal association between COVID-19 and LTL in either direction.
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