Antarctic Regions

南极地区
  • 文章类型: Journal Article
    High Latitude fjords can serve as sediment trap, bearing different type of proxies, from geochemical to micropaleontological ones, making them exceptional tools for paleoenvironmental reconstruction. However, some unconventional proxies can be present and can be used to depict a comprehensive and exhaustive interpretation of past changes. Here, studying a sediment core in Edisto Inlet (Ross Sea, Antarctica) we used irregular echinoid spines and ophiuroids (Ophionotus victoriae) ossicles to trace environmental changes throughout the last 3.6 kyrs BP. Irregular echinoids can serve as proxy for the organic matter content, while O. victoriae ossicles can be used as proxy for steady sea-ice cycle along with organic deposition events. O. victoriae release a high number of ossicles, making estimation about the population quite challenging; still, presence data, can be easily collected. By applying Generative Additive Models to the stratigraphical distribution of these data, we detected an environmental phase that was previously unnoticed by other traditional proxies: the Ophiuroid Optimum (2-1.5 kyrs BP). In conclusion, here we demonstrate how echinoderm presence can be used as a valuable source of information, while proving the potential of modelling binary data to detect long-term trend in Holocene stratigraphical records.
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  • 文章类型: Journal Article
    免疫防御对于生存至关重要,但发展和维持成本高昂。因此,假设增加的免疫投资与其他生活史特征进行权衡。这里,我们研究了野生南极海狗对环境异质性的先天和适应性免疫反应。在一个完全交叉,重复措施设计,在食物供应对比的季节,我们从密度对比的殖民地中抽取了100只幼崽和它们的母亲。在两个关键的生活史阶段收集了生物特征和皮质醇数据以及用于分析13种免疫和氧化状态标志物的血液。我们表明,幼崽的免疫反应比成年人对食物供应的变化更敏感,但不是人口密度,并由皮质醇和条件调节。免疫投资与幼崽和母亲的不同氧化状态标记相关。我们的结果表明,早期生命阶段对外部和内在效应物表现出更大的敏感性,即使在南极洲等低病原体环境中,免疫力也可能是自然选择的重要目标。
    Immune defenses are crucial for survival but costly to develop and maintain. Increased immune investment is therefore hypothesized to trade-off with other life-history traits. Here, we examined innate and adaptive immune responses to environmental heterogeneity in wild Antarctic fur seals. In a fully crossed, repeated measures design, we sampled 100 pups and their mothers from colonies of contrasting density during seasons of contrasting food availability. Biometric and cortisol data as well as blood for the analysis of 13 immune and oxidative status markers were collected at two key life-history stages. We show that immune responses of pups are more responsive than adults to variation in food availability, but not population density, and are modulated by cortisol and condition. Immune investment is associated with different oxidative status markers in pups and mothers. Our results suggest that early life stages show greater sensitivity to extrinsic and intrinsic effectors, and that immunity may be a strong target for natural selection even in low-pathogen environments such as Antarctica.
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  • 文章类型: Journal Article
    铜稳态是生物体内的一个基本过程,以独特的途径为特征,这些途径已经进化以满足特定需求,同时保留核心抗性机制。虽然这些系统在模型细菌中有很好的记录,有关适应寒冷环境的物种中铜抗性的信息很少。本研究调查了阿根廷白菊(JUB59-T)基因组中与铜稳态相关的潜在基因,一种从南极海水中分离出的精神耐受细菌。我们确定了几个编码类似于对铜稳态至关重要的蛋白质的基因,包括三个铜转运P1B型ATP酶序列。其中一个,被称为BaCopA1,被选择用于在酿酒酵母中克隆和表达。BaCopA1成功整合到酵母膜中,随后用洗涤剂提取。纯化的BaCopA1证明了在低温下催化ATP水解的能力。生成了各种BaCopA1构象的结构模型,并将其与嗜中和嗜热同源结构进行了比较。关键残基的显着保守性和这些蛋白质之间的结构相似性表明了铜转运的共同反应机制。这项研究首次报道了一种精神耐受性P1B-ATPase,该酶已以功能形式表达和纯化。
    Copper homeostasis is a fundamental process in organisms, characterised by unique pathways that have evolved to meet specific needs while preserving core resistance mechanisms. While these systems are well-documented in model bacteria, information on copper resistance in species adapted to cold environments is scarce. This study investigates the potential genes related to copper homeostasis in the genome of Bizionia argentinensis (JUB59-T), a psychrotolerant bacterium isolated from Antarctic seawater. We identified several genes encoding proteins analogous to those crucial for copper homeostasis, including three sequences of copper-transport P1B-type ATPases. One of these, referred to as BaCopA1, was chosen for cloning and expression in Saccharomyces cerevisiae. BaCopA1 was successfully integrated into yeast membranes and subsequently extracted with detergent. The purified BaCopA1 demonstrated the ability to catalyse ATP hydrolysis at low temperatures. Structural models of various BaCopA1 conformations were generated and compared with mesophilic and thermophilic homologous structures. The significant conservation of critical residues and structural similarity among these proteins suggest a shared reaction mechanism for copper transport. This study is the first to report a psychrotolerant P1B-ATPase that has been expressed and purified in a functional form.
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  • 文章类型: Journal Article
    宇航员海是南大洋中进入最少的地区之一,我们对该地区鱼类生物多样性的了解很少。在这项研究中,我们通过分析在第37和38次中国国家南极研究考察队(CHINARE)航行中通过拖网捕捞的98个鱼类样品的细胞色素氧化酶I(COI)条形码,提供了对宇航员海底栖鱼类多样性的描述。代表19属和11科的24种,即,甲科,Bathydraconidae,鱼科,甲虫科,Liparidae,巨尿科,Muraenolepidae,Myctophidae,Nototheniidae,副翅目和动物园科,被歧视和识别,与南极高陆架地区的当地鱼类发生记录和底栖鱼类群落的一般模式基本相同。由于两种潜在隐蔽物种的指示性信号,未能在所有物种中检测到和确认条形码间隙的有效性。然而,DNA条形码仍然被证明是区分和分类南极鱼类的一种非常有效和合理的方法。在未来,鼓励涵盖宇航员海所有地理部分和深度地层的各种采样策略,以增强我们对当地鱼类群落的了解,在其中,DNA条形码可以在分子分类学或建立用于eDNA元条形码分析的专用本地参考数据库中发挥重要作用。
    The Cosmonaut Sea is one of the least accessed regions in the Southern Ocean, and our knowledge about the fish biodiversity in the region is sparse. In this study, we provided a description of demersal fish diversity in the Cosmonaut Sea by analysing cytochrome oxidase I (COI) barcodes of 98 fish samples that were hauled by trawling during the 37th and 38th Chinese National Antarctic Research Expedition (CHINARE) cruises. Twenty-four species representing 19 genera and 11 families, namely, Artedidraconidae, Bathydraconidae, Bathylagidae, Channichthyidae, Liparidae, Macrouridae, Muraenolepididae, Myctophidae, Nototheniidae, Paralepididae and Zoarcidae, were discriminated and identified, which were largely identical to local fish occurrence records and the general pattern of demersal fish communities at high Antarctic shelf areas. The validity of a barcoding gap failed to be detected and confirmed across all species due to the indicative signals of two potential cryptic species. Nevertheless, DNA barcoding still demonstrated to be a very efficient and sound method for the discrimination and classification of Antarctic fishes. In the future, various sampling strategies that cover all geographic sections and depth strata of the Cosmonaut Sea are encouraged to enhance our understanding of local fish communities, within which DNA barcoding can play an important role in either molecular taxonomy or the establishment of a dedicated local reference database for eDNA metabarcoding analyses.
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  • 文章类型: Journal Article
    南极洲,地球上最极端的环境之一,宿主不同的微生物群落。这些微生物已经进化并适应了在这些恶劣的条件下生存,但是关于这个过程背后的分子机制的知识仍然有限。意大利南极细菌收藏(CollezioneItalianaBatteriAntarticipi(CIBAN)),由梅西纳大学管理,代表了从各种南极环境中分离出的适应冷的细菌菌株的宝贵储存库。在这项研究中,我们测序和分析了58个来自CIBAN收集的海洋γ变形杆菌菌株的基因组,在1990年至2005年的意大利探险中被隔离。通过使用基因组尺度指标,我们对这些菌株进行了分类学表征,并将它们分配给四个不同的属:假单胞菌属,假交替单胞菌,Shewanella,和嗜冷杆菌.基因组注释揭示了以前未开发的功能潜力,包括次级代谢产物生物合成基因簇和抗生素抗性基因。系统发育分析提供了进化见解,而对冷休克蛋白存在的评估揭示了适应机制。我们的研究强调了CIBAN作为了解南极微生物生命及其生物技术潜力的资源的重要性。基因组数据揭示了深入了解南极洲细菌存在的新视野。
    Antarctica, one of the most extreme environments on Earth, hosts diverse microbial communities. These microbes have evolved and adapted to survive in these hostile conditions, but knowledge on the molecular mechanisms underlying this process remains limited. The Italian Collection of Antarctic Bacteria (Collezione Italiana Batteri Antartici (CIBAN)), managed by the University of Messina, represents a valuable repository of cold-adapted bacterial strains isolated from various Antarctic environments. In this study, we sequenced and analyzed the genomes of 58 marine Gammaproteobacteria strains from the CIBAN collection, which were isolated during Italian expeditions from 1990 to 2005. By employing genome-scale metrics, we taxonomically characterized these strains and assigned them to four distinct genera: Pseudomonas, Pseudoalteromonas, Shewanella, and Psychrobacter. Genome annotation revealed a previously untapped functional potential, including secondary metabolite biosynthetic gene clusters and antibiotic resistance genes. Phylogenomic analyses provided evolutionary insights, while assessment of cold-shock protein presence shed light on adaptation mechanisms. Our study emphasizes the significance of CIBAN as a resource for understanding Antarctic microbial life and its biotechnological potential. The genomic data unveil new horizons for insight into bacterial existence in Antarctica.
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  • 文章类型: Journal Article
    蓝藻是一种分布广泛的丝状陆生原核生物,这表明它对环境或非生物胁迫具有很高的适应性。在N.commune的两个登录处进行了生理参数和蛋白质组学分析,目的是阐明遥远地理类型之间生理轨迹的差异,即南极(AN)和中欧(CE)。获得的结果清楚地表明,AN地理型表明总酚水平升高,黄酮类化合物,类胡萝卜素,和藻胆蛋白,通过与CE样品的比较,表明其对环境压力的适应性。此外,我们采用LC-MS分析研究了来自AN和CE地理型的N.commune的蛋白质组。总的来说,鉴定了1147种蛋白质,其中646种蛋白质在两个种质中都表达了显着(上调)变化。在AN几何图形中,与CE地理型中的25个相比,鉴定了83个专有蛋白。重要蛋白质的功能分类显示大部分参与光合作用,氨基酸代谢,碳水化合物代谢和蛋白质生物合成。进一步的分析揭示了一些防御相关的蛋白质,例如,超氧化物歧化酶(SOD)和谷胱甘肽还原酶,这在ANN.公社中相当明确地表达。最后两种蛋白质表明ANN公社的压力更大。总之,我们的发现强调了生化过程,保护N.commune的一个地理类型免受极端环境挑战,没有记录在CE加入中,可能是由于欧洲压力较小的环境。这项研究带来了有史以来第一次N.commune的蛋白质组学分析,强调需要对具有相当可塑性基因组的该物种的气候适应性进行进一步研究。
    Cyanobacterium Nostoc commune is a filamentous terrestrial prokaryotic organism widely distributed, which suggest its high adaptive potential to environmental or abiotic stress. Physiological parameters and proteomic analysis were performed in two accession of N. commune with the aim to elucidate the differences of physiological trails between distant geotypes, namely Antarctic (AN) and central European (CE). The result obtained clearly showed that the AN geotype demonstrates elevated levels of total phenols, flavonoids, carotenoids, and phycobiliproteins, indicative of its adaptation to environmental stress as referred by comparison to CE sample. Additionally, we employed LC-MS analysis to investigate the proteomes of N. commune from AN and CE geotypes. In total, 1147 proteins were identified, among which 646 proteins expressed significant (up-regulation) changes in both accessions. In the AN geotype, 83 exclusive proteins were identified compared to 25 in the CE geotype. Functional classification of the significant proteins showed a large fraction involved in photosynthesis, amino acid metabolism, carbohydrate metabolism and protein biosynthesis. Further analysis revealed some defense-related proteins such as, superoxide dismutase (SOD) and glutathione reductase, which are rather explicitly expressed in the AN N. commune. The last two proteins suggest a more stressful condition in AN N. commune. In summary, our findings highlight biochemical processes that safeguard the AN geotype of N. commune from extreme environmental challenges, not recorded in CE accession, probably due to less stressful environment in Europe. This study brings the first ever proteomic analysis of N. commune, emphasizing the need for additional investigations into the climate adaptation of this species with rather plastic genome.
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  • 文章类型: Journal Article
    这项研究表征了从BoeckellaLake获得的沉积物中存在的可培养真菌,希望湾,在南极半岛的东北部,并评估了他们的潜在工业兴趣的酶和生物表面活性剂的生产。共获得116株真菌分离物,在子囊门内被分为16个属,担子菌和被孢菌,在等级上。丝状真菌最丰富的属包括假木曲,假尿嘧啶和南极霉菌;对于酵母,Thelebolales和Naganishia分类群占主导地位。总的来说,湖泊沉积物表现出高度的真菌多样性和中等的丰富度和优势度。酯酶,纤维素酶和蛋白酶是这些真菌产生最多的。Rambeacf.ozimecii,Holtermanniellawattica,肌白孢子虫,白孢子虫。,Mrakiablollopis,Naganishiasp.和苯酚。显示酶指数>2。14株丝状真菌的乳化指数为24%(EI24%)≥50%;其中,三个嗜冷菌分离株的EI24%>80%。由于区域气候变化的影响,Boeckella湖本身正处于干燥过程中,可能会在接近几十年的时间里完全消失,因此,拥有一个受威胁的可培养真菌群落,这些真菌产生重要的生物分子,在生物技术过程中具有潜在的应用。
    This study characterized cultivable fungi present in sediments obtained from Boeckella Lake, Hope Bay, in the north-east of the Antarctic Peninsula, and evaluated their production of enzymes and biosurfactants of potential industrial interest. A total of 116 fungal isolates were obtained, which were classified into 16 genera within the phyla Ascomycota, Basidiomycota and Mortierellomycota, in rank. The most abundant genera of filamentous fungi included Pseudogymnoascus, Pseudeurotium and Antarctomyces; for yeasts, Thelebolales and Naganishia taxa were dominant. Overall, the lake sediments exhibited high fungal diversity and moderate richness and dominance. The enzymes esterase, cellulase and protease were the most abundantly produced by these fungi. Ramgea cf. ozimecii, Holtermanniella wattica, Leucosporidium creatinivorum, Leucosporidium sp., Mrakia blollopis, Naganishia sp. and Phenoliferia sp. displayed enzymatic index > 2. Fourteen isolates of filamentous fungi demonstrated an Emulsification Index 24% (EI24%) ≥ 50%; among them, three isolates of A. psychrotrophicus showed an EI24% > 80%. Boeckella Lake itself is in the process of drying out due to the impact of regional climate change, and may be lost completely in approaching decades, therefore hosts a threatened community of cultivable fungi that produce important biomolecules with potential application in biotechnological processes.
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  • 文章类型: Journal Article
    从Larsemann和BungerHills(南极洲)收集的样品中分离出十种耐精神代谢的甲基营养细菌。大多数分离株被分配到假单胞菌属,Janthinobacterium属的代表,Massilia,还发现了甲虫和黄杆菌。大多数分离株能够在多种糖上生长,甲胺和其他底物。分离菌株的最佳生长温度在6°C至28°C之间变化。NaCl的最佳浓度为0.5-2.0%。培养基的最佳pH值为6-7。发现三个菌株在L-色氨酸达到11-12μg/ml的培养基上合成吲哚-3-乙酸。几种菌株的细胞内碳水化合物值超过50μg/ml。已显示某些分离株存在钙依赖性和镧依赖性甲醇脱氢酶。菌株xBan7、xBan20、xBan37、xBan49、xPrg27、xPrg48、xPrg51显示游离氨基酸的存在。地球冰冻圈对此类微生物的生物勘探在生物技术中具有潜力。
    Ten strains of psychrotolerant methylotrophic bacteria were isolated from the samples collected in Larsemann and Bunger Hills (Antarctica). Most of the isolates are assigned to the genus Pseudomonas, representatives of the genera Janthinobacterium, Massilia, Methylotenera and Flavobacterium were also found. Majority of isolates were able to grow on a wide range of sugars, methylamines and other substrates. Optimal growth temperatures for the isolated strains varied from 6 °C to 28 °C. The optimal concentration of NaCl was 0.5-2.0%. The optimal pH values of the medium were 6-7. It was found that three strains synthesized indole-3-acetic acid on a medium with L-tryptophan reaching 11-12 μg/ml. The values of intracellular carbohydrates in several strains exceeded 50 μg/ml. Presence of calcium-dependent and lanthanum-dependent methanol dehydrogenase have been shown for some isolates. Strains xBan7, xBan20, xBan37, xBan49, xPrg27, xPrg48, xPrg51 showed the presence of free amino acids. Bioprospection of Earth cryosphere for such microorganisms has a potential in biotechnology.
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  • 文章类型: Journal Article
    微生物群在所有后生动物的健康中起着关键作用。微生物组是否以及如何有利于生物体对极端条件的适应过程,比如南极洲,与大多数后生动物不相容,仍然未知。我们调查了三种特有和广泛分布的南极多毛类物种的微生物组:双毛,Aphlochaetapalmeri,和紫草虫。我们在这里报告说,这些无脊椎动物含有一个稳定的细菌核心,主要由Meiothermus和Anoxybacillus,配备了通用的基因组成和独特的蛋白质组合,可用于应对pangenomic和metaprotec分析所揭示的极端寒冷的条件。Meiothermus和Anoxybacillus与这些南极多毛菌之间的紧密系统共生关系表明,它们与宿主之间的联系始于过去,以支持对南极海洋的适应性。在南极多毛菌中发现的广泛的细菌冷冻保护蛋白可能对开发基于自然的生物技术应用有用。
    The microbiome plays a key role in the health of all metazoans. Whether and how the microbiome favors the adaptation processes of organisms to extreme conditions, such as those of Antarctica, which are incompatible with most metazoans, is still unknown. We investigated the microbiome of three endemic and widespread species of Antarctic polychaetes: Leitoscoloplos geminus, Aphelochaeta palmeri, and Aglaophamus trissophyllus. We report here that these invertebrates contain a stable bacterial core dominated by Meiothermus and Anoxybacillus, equipped with a versatile genetic makeup and a unique portfolio of proteins useful for coping with extremely cold conditions as revealed by pangenomic and metaproteomic analyses. The close phylosymbiosis between Meiothermus and Anoxybacillus and these Antarctic polychaetes indicates a connection with their hosts that started in the past to support holobiont adaptation to the Antarctic Ocean. The wide suite of bacterial cryoprotective proteins found in Antarctic polychaetes may be useful for the development of nature-based biotechnological applications.
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  • 文章类型: Journal Article
    FioAntar,FIOCRUZ在南极洲的研究项目,基于一个健康的方法。FioAntar旨在生成相关信息,以帮助降低未来大流行的风险,并改善对化学化合物和新生物分子的搜索。在PROANTAR范围内对南极洲进行了四次探险之后,Fiocruz已在环境粪便样本中鉴定出H11N2流感病毒,以及土壤样品中的组织胞浆和蜡状芽孢杆菌。此外,在南设得兰群岛不同湖泊的前瞻性病毒学分析中,描述了六个病毒订单,支持未来与这个极端生态系统中的生物多样性和病毒生态学相关的研究。我们对具有公共卫生重要性的环境病原体的发现警告说,由于持续的环境和气候变化对地球上人类健康的迫在眉睫的风险,迫切需要在南极洲建立人畜共患病监测议程。FioAntar致力于在南极洲建立全面的监视计划,监测有可能超越大陆边界的病原体的循环,从而减轻潜在的传播。对于Fiocruz来说,南极洲标志着一个新的边界,充满探索新技术的机会,完善既定的方法,培养宝贵的知识。
    FioAntar, FIOCRUZ\'s research project in Antarctica, is based on the One Health approach. FioAntar aims to generate relevant information that will help reduce the risk of future pandemics and improve the search for chemical compounds and new biological molecules. After four expeditions to Antarctica under the scope of PROANTAR, Fiocruz has identified Influenza H11N2 virus in environmental fecal samples, as well as Histoplasma capsulatum and Bacillus cereus in soil samples. In addition, in a prospective virome analysis from different lakes in the South Shetland Islands, six viral orders were described, supporting future research related to the biodiversity and viral ecology in this extreme ecosystem. Our findings of environmental pathogens of public health importance are a warning about the urgency of establishing a surveillance agenda on zoonoses in Antarctica due to the imminent risks that ongoing environmental and climate changes impose on human health across the planet. FioAntar strives to establish a comprehensive surveillance program across Antarctica, monitoring circulation of pathogens with the potential to transcend continent boundaries, thereby mitigating potential spread. For Fiocruz, Antarctica signifies a new frontier, teeming with opportunities to explore novel techniques, refine established methodologies, and cultivate invaluable knowledge.
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