Actin Depolymerizing Factors

肌动蛋白解聚因子
  • 文章类型: Journal Article
    cofilin的优先和协同结合以及簇向肌动蛋白丝尖端扩展的潜在机制仍然知之甚少。为了解决这个问题,我们基于可用的丝状肌动蛋白(F-actin)和C-actin(cofilin从cofilactin中排除)结构进行了主成分分析,并与单体G-actin进行了比较.结果强烈表明,C-肌动蛋白,而不是F-ADP-肌动蛋白,代表了cofilin结合偏好的有利结构。高速原子力显微镜研究发现,与尖端侧的cofilin簇相邻的缩短的裸露半螺旋比正常螺旋包括更少的肌动蛋白原聚体。在缩短的裸露半螺旋中,沿着相同的长螺距链的两个相邻的肌动蛋白原聚体之间的平均轴向距离(MAD)比典型螺旋中的MAD(4.3-5.6nm)更长(5.0-6.3nm)。螺旋扭转过程中扭转运动的抑制,通过对脂质膜的更强附着来实现,与溶液中无机磷酸盐(Pi)的存在相比,对cofilin结合和簇形成的抑制作用更为明显。F-ADP-肌动蛋白比F-ADP表现出更自然的超扭曲半螺旋。Pi-肌动蛋白,解释Pi如何以可变的螺旋扭曲抑制cofilin与F-肌动蛋白的结合。我们建议在较短的裸露螺旋扭曲内的质子发生器,无论是受到热波动的影响,还是由cofilin簇引起的变构效应,表现出具有细长MAD的C-肌动蛋白样结构的特征,导致cofilin的优先和合作绑定。
    The mechanism underlying the preferential and cooperative binding of cofilin and the expansion of clusters toward the pointed-end side of actin filaments remains poorly understood. To address this, we conducted a principal component analysis based on available filamentous actin (F-actin) and C-actin (cofilins were excluded from cofilactin) structures and compared to monomeric G-actin. The results strongly suggest that C-actin, rather than F-ADP-actin, represented the favourable structure for binding preference of cofilin. High-speed atomic force microscopy explored that the shortened bare half helix adjacent to the cofilin clusters on the pointed end side included fewer actin protomers than normal helices. The mean axial distance (MAD) between two adjacent actin protomers along the same long-pitch strand within shortened bare half helices was longer (5.0-6.3 nm) than the MAD within typical helices (4.3-5.6 nm). The inhibition of torsional motion during helical twisting, achieved through stronger attachment to the lipid membrane, led to more pronounced inhibition of cofilin binding and cluster formation than the presence of inorganic phosphate (Pi) in solution. F-ADP-actin exhibited more naturally supertwisted half helices than F-ADP.Pi-actin, explaining how Pi inhibits cofilin binding to F-actin with variable helical twists. We propose that protomers within the shorter bare helical twists, either influenced by thermal fluctuation or induced allosterically by cofilin clusters, exhibit characteristics of C-actin-like structures with an elongated MAD, leading to preferential and cooperative binding of cofilin.
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  • 文章类型: Journal Article
    肌动蛋白和微管细胞骨架之间的串扰对许多细胞过程很重要。最近的研究表明,微管和F-肌动蛋白可以组装形成复合结构,其中F-肌动蛋白占据微管腔。这些细胞骨架杂种是否存在于生理环境中以及它们是如何形成的尚不清楚。这里,我们表明,先前在人HAP1细胞的微管内发现的短交叉I类肌动蛋白丝是与cofilin结合的F-肌动蛋白。腔内F-肌动蛋白可以在体外重建,但是cofilin不是必需的。此外,在生理条件下,具有cofilin结合和经典形态的肌动蛋白丝位于人血小板微管内。我们建议在电机驱动的微管循环和滑动过程中施加在微管网络上的应力可能会促进肌动蛋白掺入微管中。
    Crosstalk between the actin and microtubule cytoskeletons is important for many cellular processes. Recent studies have shown that microtubules and F-actin can assemble to form a composite structure where F-actin occupies the microtubule lumen. Whether these cytoskeletal hybrids exist in physiological settings and how they are formed is unclear. Here, we show that the short-crossover Class I actin filament previously identified inside microtubules in human HAP1 cells is cofilin-bound F-actin. Lumenal F-actin can be reconstituted in vitro, but cofilin is not essential. Moreover, actin filaments with both cofilin-bound and canonical morphologies reside within human platelet microtubules under physiological conditions. We propose that stress placed upon the microtubule network during motor-driven microtubule looping and sliding may facilitate the incorporation of actin into microtubules.
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  • 文章类型: Journal Article
    目的:在本研究中,我们研究了LIMK1在宫颈癌进展中的作用机制.
    方法:LIMK1在调节生长中的生物学作用,入侵,在SiHa研究了宫颈癌的转移,CaSki细胞和裸鼠肿瘤模型。HE染色评价LIMK1在宫颈癌生长中的作用。LIMK1在入侵中的作用,转移,通过细胞划痕评估宫颈癌的增殖,Transwell,和单克隆实验。LIMK1、ROS、和Src通过Western印迹评价。通过细胞功能试验评价了调节ROS和p-Src表达对LIMK1在宫颈癌细胞迁移/侵袭和增殖中的作用。
    结果:LIMK1过表达促进裸鼠肿瘤生长。细胞划痕,Transwell,单克隆实验表明LIMK1促进了入侵,转移,和宫颈癌细胞的增殖。Westernblotting提示LIMK1可促进ROS相关蛋白NOX2、NOX4、p-Src、和下游蛋白p-FAK,p-ROCK1/2、p-Cofilin-1、F-肌动蛋白和抑制p-SHP2蛋白的表达。校正实验表明,LIMK1通过调节ROS和p-Src调节p-FAK和p-Cofilin-1蛋白的表达。通过检测宫颈癌细胞的功能,发现LIMK1诱导的ROS和p-Src的激活是促进迁移的早期事件,扩散,和宫颈癌细胞的侵袭。
    结论:LIMK1通过调节氧化应激/Src介导的p-FAK/p-ROCK1/2/p-Cofilin-1通路,促进F-actin的表达,促进宫颈癌的发生发展。
    OBJECTIVE: In this study, we investigated the mechanism of action of LIMK1 in cervical cancer progression.
    METHODS: The biological role of LIMK1 in regulating the growth, invasion, and metastasis of cervical cancer was studied in SiHa, CaSki cells and nude mice tumor models. The role of LIMK1 in the growth of cervical cancer was evaluated by HE staining. The role of LIMK1 in the invasion, metastasis, and proliferation of cervical cancer was evaluated by cell scratch, Transwell, and monoclonal experiments. The interaction among LIMK1, ROS, and Src was evaluated by Western blotting. The effects of regulating ROS and p-Src expression on LIMK1 in the migration/invasion and proliferation of cervical cancer cells were evaluated through cellular functional assays.
    RESULTS: Overexpression of LIMK1 promoted tumor growth in nude mice. Cell scratch, Transwell, and monoclonal experiments suggested that LIMK1 promoted the invasion, metastasis, and proliferation of cervical cancer cells. Western blotting suggested that LIMK1 can promote the expression of ROS-related proteins NOX2, NOX4, p-Src, and downstream proteins p-FAK, p-ROCK1/2, p-Cofilin-1, F-actin and inhibit the expression of p-SHP2 protein. Correction experiments showed that LIMK1 regulated the expression of p-FAK and p-Cofilin-1 proteins by regulating ROS and p-Src. Through the detection of cervical cancer cell functions, it was found that the activation of ROS and p-Src induced by LIMK1 is an early event that promotes the migration, proliferation, and invasion of cervical cancer cells.
    CONCLUSIONS: LIMK1 promotes the expression of F-actin and promotes the development of cervical cancer by regulating the oxidative stress/Src-mediated p-FAK/p-ROCK1/2/p-Cofilin-1 pathway.
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  • 文章类型: Journal Article
    Cofilin,一种肌动蛋白切断蛋白,在肌肉肌节的添加和维持中起着关键作用。我们以前的工作发现果蝇cofilin(DmCFL)肌肉敲除会导致肌肉结构和功能的进行性恶化,并产生由cofilin突变引起的线虫肌病(NM)中可见的特征。我们假设DmCFL敲低对肌动蛋白细胞骨架动力学的破坏会影响肌肉发育的其他方面,and,因此,进行了RNA测序分析,出乎意料地揭示了许多神经肌肉接头(NMJ)基因的上调表达。我们发现DmCFL在肌肉突触后室中富集,并且DmCFL肌肉敲除会导致该亚细胞域中的F-肌动蛋白解体,然后在发育后期观察到肌节缺陷。尽管NMJ基因表达发生变化,我们发现突触前Bruchpilot总活动区或突触后谷氨酸受体总水平无显著变化.然而,DmCFL敲低导致GluRIIA类谷氨酸受体在更多恶化的肌肉中的错位和强烈损害NMJ传输强度。这些发现扩大了我们对cofilin在肌肉中的作用的理解,包括NMJ结构发育,并表明NMJ缺陷可能有助于NM病理生理学。
    Cofilin, an actin-severing protein, plays key roles in muscle sarcomere addition and maintenance. Our previous work found that Drosophila cofilin (DmCFL) knockdown in muscle causes progressive deterioration of muscle structure and function and produces features seen in nemaline myopathy caused by cofilin mutations. We hypothesized that disruption of actin cytoskeleton dynamics by DmCFL knockdown would impact other aspects of muscle development, and, thus, conducted an RNA-sequencing analysis that unexpectedly revealed upregulated expression of numerous neuromuscular junction (NMJ) genes. We found that DmCFL is enriched in the muscle postsynaptic compartment and that DmCFL muscle knockdown causes F-actin disorganization in this subcellular domain prior to the sarcomere defects observed later in development. Despite NMJ gene expression changes, we found no significant changes in gross presynaptic Bruchpilot active zones or total postsynaptic glutamate receptor levels. However, DmCFL knockdown resulted in mislocalization of GluRIIA class glutamate receptors in more deteriorated muscles and strongly impaired NMJ transmission strength. These findings expand our understanding of the roles of cofilin in muscle to include NMJ structural development and suggest that NMJ defects may contribute to the pathophysiology of nemaline myopathy.
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  • 文章类型: Journal Article
    PAI-1(纤溶酶原激活物抑制剂-1)的血浆浓度与动脉僵硬度相关。血管平滑肌细胞(SMC)表达PAI-1,SMC的固有硬度是总动脉硬度的主要决定因素。我们假设PAI-1通过调节细胞骨架促进SMC僵硬度,而PAI-1的药理学抑制降低SMC和主动脉僵硬度。
    PAI-039,PAI-1的特异性抑制剂和小干扰RNA用于抑制培养的人SMC中PAI-1的表达。PAI-1抑制对SMC硬度的影响,F-肌动蛋白(丝状肌动蛋白)含量,和细胞骨架调节酶进行了评估。WT(野生型)和PAI-1缺陷的鼠SMC用于确定PAI-039特异性。进行RNA测序以确定PAI-039对SMC基因表达的影响。通过主动脉脉搏波速度评估PAI-039的体内作用。
    PAI-039显著降低了人体SMC的固有刚度,伴随着细胞质F-肌动蛋白含量的显着降低。PAI-1基因敲低也降低了细胞质F-肌动蛋白。PAI-1抑制显著增加了cofilin的活性,一种F-肌动蛋白解聚酶,在WT鼠SMC中,但在缺乏PAI-1的SMC中没有。RNA测序分析表明,PAI-039上调SMC中的AMPK(AMP激活的蛋白激酶)信号,这得到了西方印迹的证实。AMPK的抑制阻止了PAI-039对cofilin的活化。在老鼠身上,PAI-039显着降低主动脉硬度和中膜F-肌动蛋白含量,而不改变弹性蛋白或胶原蛋白含量。
    PAI-039降低固有的SMC刚度和胞质应激纤维含量。这些作用是由AMPK依赖性的cofilin激活介导的。PAI-039还降低体内主动脉硬度。这些发现表明,PAI-1是SMC细胞骨架的重要调节剂,并且PAI-1的药理抑制作用具有预防和治疗涉及动脉硬化的心血管疾病的潜力。
    UNASSIGNED: Plasma concentration of PAI-1 (plasminogen activator inhibitor-1) correlates with arterial stiffness. Vascular smooth muscle cells (SMCs) express PAI-1, and the intrinsic stiffness of SMCs is a major determinant of total arterial stiffness. We hypothesized that PAI-1 promotes SMC stiffness by regulating the cytoskeleton and that pharmacological inhibition of PAI-1 decreases SMC and aortic stiffness.
    UNASSIGNED: PAI-039, a specific inhibitor of PAI-1, and small interfering RNA were used to inhibit PAI-1 expression in cultured human SMCs. Effects of PAI-1 inhibition on SMC stiffness, F-actin (filamentous actin) content, and cytoskeleton-modulating enzymes were assessed. WT (wild-type) and PAI-1-deficient murine SMCs were used to determine PAI-039 specificity. RNA sequencing was performed to determine the effects of PAI-039 on SMC gene expression. In vivo effects of PAI-039 were assessed by aortic pulse wave velocity.
    UNASSIGNED: PAI-039 significantly reduced intrinsic stiffness of human SMCs, which was accompanied by a significant decrease in cytoplasmic F-actin content. PAI-1 gene knockdown also decreased cytoplasmic F-actin. PAI-1 inhibition significantly increased the activity of cofilin, an F-actin depolymerase, in WT murine SMCs, but not in PAI-1-deficient SMCs. RNA-sequencing analysis suggested that PAI-039 upregulates AMPK (AMP-activated protein kinase) signaling in SMCs, which was confirmed by Western blotting. Inhibition of AMPK prevented activation of cofilin by PAI-039. In mice, PAI-039 significantly decreased aortic stiffness and tunica media F-actin content without altering the elastin or collagen content.
    UNASSIGNED: PAI-039 decreases intrinsic SMC stiffness and cytoplasmic stress fiber content. These effects are mediated by AMPK-dependent activation of cofilin. PAI-039 also decreases aortic stiffness in vivo. These findings suggest that PAI-1 is an important regulator of the SMC cytoskeleton and that pharmacological inhibition of PAI-1 has the potential to prevent and treat cardiovascular diseases involving arterial stiffening.
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  • 文章类型: Journal Article
    脑室周围结节性异位症(PNH),在成年期诊断出的最常见的大脑畸形,其特征在于沿着心室壁存在神经元结节。PNH主要与编码肌动蛋白结合蛋白的FLNA基因突变有关,患者经常发生癫痫。然而,神经元衰竭的分子机制仍然难以捉摸。有人假设皮质电路功能失调,而不是异位神经元,可以解释临床表现。为了解决这个问题,我们通过定时在子宫内电穿孔Cre重组酶,从条件性Flnaflox/flox小鼠的皮质锥体神经元中清除了FLNA。我们发现FLNA调节树突生成和脊柱生成,从而促进适当的兴奋性/抑制性输入平衡。我们证明了FLNA通过与Rho-GTP酶激活蛋白24(ARHGAP24)的相互作用调节RAC1和cofilin活性。总的来说,我们公开了FLNA的一个未表征的作用,并为FLNA突变导致的神经回路功能障碍提供了有力的支持.
    Periventricular nodular heterotopia (PNH), the most common brain malformation diagnosed in adulthood, is characterized by the presence of neuronal nodules along the ventricular walls. PNH is mainly associated with mutations in the FLNA gene - encoding an actin-binding protein - and patients often develop epilepsy. However, the molecular mechanisms underlying the neuronal failure still remain elusive. It has been hypothesized that dysfunctional cortical circuitry, rather than ectopic neurons, may explain the clinical manifestations. To address this issue, we depleted FLNA from cortical pyramidal neurons of a conditional Flnaflox/flox mice by timed in utero electroporation of Cre recombinase. We found that FLNA regulates dendritogenesis and spinogenesis thus promoting an appropriate excitatory/inhibitory inputs balance. We demonstrated that FLNA modulates RAC1 and cofilin activity through its interaction with the Rho-GTPase Activating Protein 24 (ARHGAP24). Collectively, we disclose an uncharacterized role of FLNA and provide strong support for neural circuit dysfunction being a consequence of FLNA mutations.
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  • 文章类型: Journal Article
    狂犬病病毒(RABV)是高度致命的,并引发严重的神经系统症状。神经致病机制仍然知之甚少。Ras相关的C3肉毒杆菌毒素底物1(Rac1)是一种参与肌动蛋白重塑的Rho-GTP酶,据报道与神经元功能障碍密切相关。在这项研究中,通过药物抑制剂的组合,小干扰RNA,和特定的显性阴性,我们描述了动态肌动蛋白的关键作用和Rac1在RABV感染中的调节功能,主要在病毒进入阶段。数据显示RABV磷蛋白与Rac1相互作用。RABV磷蛋白抑制Rac1活性并阻碍下游Pak1-Limk1-Cofilin1信号传导,导致基于F-肌动蛋白的结构形成的破坏。在早期病毒感染中,EGFR-Rac1信号通路经历了双相变化,首先上调,然后下调,对应于RABV进入诱导的F-肌动蛋白重塑模式。一起来看,我们的研究结果首次证明了Rac1信号通路在RABV感染中的作用,并可能为狂犬病神经发病机制的病因解释提供了线索.重要性尽管致命性狂犬病中神经元功能障碍占主导地位,狂犬病病毒(RABV)感染引起神经系统症状的详细机制仍存在疑问。肌动蛋白细胞骨架参与许多病毒感染,在维持神经功能中起着至关重要的作用。细胞骨架破坏与异常神经症状密切相关,并诱发神经源性疾病。在这项研究中,我们表明RABV感染导致细胞骨架的重排以及Rac1信号转导的双相动力学。这些结果有助于阐明通过RABV感染引起异常神经元过程的机制,并可能阐明旨在改善神经系统疾病的治疗发展。
    Rabies virus (RABV) is highly lethal and triggers severe neurological symptoms. The neuropathogenic mechanism remains poorly understood. Ras-related C3 botulinum toxin substrate 1 (Rac1) is a Rho-GTPase that is involved in actin remodeling and has been reported to be closely associated with neuronal dysfunction. In this study, by means of a combination of pharmacological inhibitors, small interfering RNA, and specific dominant-negatives, we characterize the crucial roles of dynamic actin and the regulatory function of Rac1 in RABV infection, dominantly in the viral entry phase. The data show that the RABV phosphoprotein interacts with Rac1. RABV phosphoprotein suppress Rac1 activity and impedes downstream Pak1-Limk1-Cofilin1 signaling, leading to the disruption of F-actin-based structure formation. In early viral infection, the EGFR-Rac1-signaling pathway undergoes a biphasic change, which is first upregulated and subsequently downregulated, corresponding to the RABV entry-induced remodeling pattern of F-actin. Taken together, our findings demonstrate for the first time the role played by the Rac1 signaling pathway in RABV infection and may provide a clue for an explanation for the etiology of rabies neurological pathogenesis.IMPORTANCEThough neuronal dysfunction is predominant in fatal rabies, the detailed mechanism by which rabies virus (RABV) infection causes neurological symptoms remains in question. The actin cytoskeleton is involved in numerous viruses infection and plays a crucial role in maintaining neurological function. The cytoskeletal disruption is closely associated with abnormal nervous symptoms and induces neurogenic diseases. In this study, we show that RABV infection led to the rearrangement of the cytoskeleton as well as the biphasic kinetics of the Rac1 signal transduction. These results help elucidate the mechanism that causes the aberrant neuronal processes by RABV infection and may shed light on therapeutic development aimed at ameliorating neurological disorders.
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  • 文章类型: Journal Article
    细胞内肌动蛋白网络通过在肌动蛋白丝的生长的倒钩末端添加ATP-肌动蛋白亚基来组装。随后是通过ATP水解和随后的磷酸盐释放的长丝的“老化”。老化的ADP-肌动蛋白亚基因此通过细丝“跑步机”,然后由于细丝尖端的解聚而释放回细胞质单体池。通过将丝线蛋白优先结合到细丝中新组装的ADP-Pi肌动蛋白亚基,可以增强在细丝拆卸之前进行老化的必要性。因此,对cofilin如何影响尖端解聚的研究,到目前为止,专注于老化的ADP-肌动蛋白丝。使用微流体辅助全内反射荧光(mf-TIRF)显微镜,我们透露,类似于它们对ADP细丝的影响,cofilin和环化酶相关蛋白(CAP)也促进ADP-Pi丝的末端解聚。有趣的是,CAP和cofilin一起进行的ADP-Pi长丝解聚的最大速率比ADP长丝低约20-40倍。Further,我们发现,对于所有三种哺乳动物cofilin亚型,ADP-Pi末端解聚的促进都是保守的。一起来看,这里提出的机制打开了新组装的肌动蛋白丝直接从其尖端拆卸的可能性,从而绕过老化过程中Pi释放的缓慢步骤。
    Intracellular actin networks assemble through the addition of ATP-actin subunits at the growing barbed ends of actin filaments. This is followed by \"aging\" of the filament via ATP hydrolysis and subsequent phosphate release. Aged ADP-actin subunits thus \"treadmill\" through the filament before being released back into the cytoplasmic monomer pool as a result of depolymerization at filament pointed ends. The necessity for aging before filament disassembly is reinforced by preferential binding of cofilin to aged ADP-actin subunits over newly-assembled ADP-Pi actin subunits in the filament. Consequently, investigations into how cofilin influences pointed-end depolymerization have, thus far, focused exclusively on aged ADP-actin filaments. Using microfluidics-assisted Total Internal Reflection Fluorescence (mf-TIRF) microscopy, we reveal that, similar to their effects on ADP filaments, cofilin and cyclase-associated protein (CAP) also promote pointed-end depolymerization of ADP-Pi filaments. Interestingly, the maximal rates of ADP-Pi filament depolymerization by CAP and cofilin together remain approximately 20-40 times lower than for ADP filaments. Further, we find that the promotion of ADP-Pi pointed-end depolymerization is conserved for all three mammalian cofilin isoforms. Taken together, the mechanisms presented here open the possibility of newly-assembled actin filaments being directly disassembled from their pointed-ends, thus bypassing the slow step of Pi release in the aging process.
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  • 文章类型: Journal Article
    过氧化物酶1(PRDX1)是过氧化物酶家族(PRDX)的重要成员,在多种肿瘤中表达上调。既往研究发现PRDX1高表达与口腔鳞状细胞癌(OSCC)的转移密切相关,但是具体的分子机制是难以捉摸的。为了阐明PRDX1在OSCC转移过程中的作用,我们评估了PRDX1在OSCC临床标本中的表达及其对OSCC患者预后的影响。然后,在体外和裸鼠舌癌模型中探讨了PRDX1对OSCC转移和细胞骨架重建的影响,并对分子机制进行了研究。PRDX1可以直接与肌动蛋白结合蛋白Cofilin相互作用,抑制其Ser3位点的磷酸化,加速肌动蛋白的解聚和周转,促进OSCC细胞运动,加重OSCC的侵袭和转移。在临床样本和小鼠舌癌模型中,PRDX1也增加了OSCC的淋巴结转移,并与Cofilin的磷酸化呈负相关;PRDX1也降低了OSCC患者的总体生存率。总之,我们的研究发现PRDX1可能是抑制OSCC转移的潜在治疗靶点.
    Peroxiredoxin 1 (PRDX1) is an important member of the peroxiredoxin family (PRDX) and is upregulated in a variety of tumors. Previous studies have found that high PRDX1 expression is closely related to the metastasis of oral squamous cell carcinoma (OSCC), but the specific molecular mechanism is elusive. To elucidate the role of PRDX1 in the metastasis process of OSCC, we evaluated the expression of PRDX1 in OSCC clinical specimens and its impact on the prognosis of OSCC patients. Then, the effect of PRDX1 on OSCC metastasis and cytoskeletal reconstruction was explored in vitro and in nude mouse tongue cancer models, and the molecular mechanisms were also investigated. PRDX1 can directly interact with the actin-binding protein Cofilin, inhibiting the phosphorylation of its Ser3 site, accelerating the depolymerization and turnover of actin, promoting OSCC cell movement, and aggravating the invasion and metastasis of OSCC. In clinical samples and mouse tongue cancer models, PRDX1 also increased lymph node metastasis of OSCC and was negatively correlated with the phosphorylation of Cofilin; PRDX1 also reduced the overall survival rate of OSCC patients. In summary, our study identified that PRDX1 may be a potential therapeutic target to inhibit OSCC metastasis.
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  • 文章类型: Journal Article
    Cofilin,一种关键的肌动蛋白结合蛋白,通过肌动蛋白切断活性和促进肌动蛋白单体的回收来协调肌动球蛋白网络的动力学。最近的实验表明,cofilin通过促进肌动蛋白成核和组装的硫醇翻译后修饰(PTM)形成功能上不同的寡聚物。尽管取得了这些进展,调节肌动蛋白活性的cofilin寡聚体的结构构象仍然难以捉摸,因为存在氧化半胱氨酸中的硫醇以快速形成二硫键的组合方式。本研究采用分子动力学模拟来研究人类cofilin1,作为通过二硫键形成探索cofilin二聚体的案例研究。在模拟中利用偏置方案,重点分析有利于二硫键形成的二聚体构象。此外,我们探索了由检查的构象集合产生的潜在PTM。使用自由能剖面,我们的模拟揭示了当前蛋白质数据库条目中未显示的一系列可能的cofilin二聚体结构。这些候选二聚体的特征在于其不同的群体分布和相对自由能。特别值得注意的是具有半胱氨酸139和147个残基之间的界面的二聚体,这证明了稳定的自由能特性和有趣的对称几何。相比之下,实验提出的二聚体结构表现出较不稳定的自由能分布。我们还根据二聚体界面的蛋白质-蛋白质相互作用中的能量景观理论评估了挫折量化。值得注意的是,39-39二聚体构型成为形成cofilin四聚体的有希望的候选者,由挫折分析证实。此外,与肌动蛋白丝的对接模拟进一步评估了这些cofilin二聚体-肌动蛋白复合物的稳定性。因此,我们的发现为理解cofilin蛋白的硫醇PTM在调节寡聚化方面的作用提供了一个计算框架。以及随后的肌动球蛋白网络中的cofilin介导的肌动蛋白动力学。
    Cofilin, a key actin-binding protein, orchestrates the dynamics of the actomyosin network through its actin-severing activity and by promoting the recycling of actin monomers. Recent experiments suggest that cofilin forms functionally distinct oligomers via thiol post-translational modifications (PTMs) that promote actin nucleation and assembly. Despite these advances, the structural conformations of cofilin oligomers that modulate actin activity remain elusive because there are combinatorial ways to oxidize thiols in cysteines to form disulfide bonds rapidly. This study employs molecular dynamics simulations to investigate human cofilin 1 as a case study for exploring cofilin dimers via disulfide bond formation. Utilizing a biasing scheme in simulations, we focus on analyzing dimer conformations conducive to disulfide bond formation. Additionally, we explore potential PTMs arising from the examined conformational ensemble. Using the free energy profiling, our simulations unveil a range of probable cofilin dimer structures not represented in current Protein Data Bank entries. These candidate dimers are characterized by their distinct population distributions and relative free energies. Of particular note is a dimer featuring an interface between cysteines 139 and 147 residues, which demonstrates stable free energy characteristics and intriguingly symmetrical geometry. In contrast, the experimentally proposed dimer structure exhibits a less stable free energy profile. We also evaluate frustration quantification based on the energy landscape theory in the protein-protein interactions at the dimer interfaces. Notably, the 39-39 dimer configuration emerges as a promising candidate for forming cofilin tetramers, as substantiated by frustration analysis. Additionally, docking simulations with actin filaments further evaluate the stability of these cofilin dimer-actin complexes. Our findings thus offer a computational framework for understanding the role of thiol PTM of cofilin proteins in regulating oligomerization, and the subsequent cofilin-mediated actin dynamics in the actomyosin network.
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