Acceptor specificity

  • 文章类型: Journal Article
    这项研究表征了氧化葡糖杆菌(LS1)的左旋蔗糖酶(LSs)的受体特异性,纳氏弧菌(LS2),新香藻(LS3),和使用蔗糖作为果糖基供体并选择酚类化合物和碳水化合物作为受体的Paraburkholderiagraminis(LS4)。总的来说,V.natriegensLS2被证明是酚类化合物转果糖糖基化的最佳生物催化剂。多于一个果糖基单元可以连接到果糖糖基化的酚类化合物上。graminisLS4对表儿茶素的转果糖糖基化导致了最多样化的产品,转移了多达五个果糖基单位。除了LS源,发现LS对酚类化合物及其转果糖糖基化产物的受体特异性在很大程度上取决于它们的化学结构:酚环的数量,羟基的反应性和脂族链或甲氧基的存在。同样,对于碳水化合物,转果糖的产量取决于LS来源和受体类型。LS2催化的麦芽糖转果糖化产生的果糖糖基化三糖的产量最高,产量达到200g/L。LS2对酚类化合物和碳水化合物的转果糖糖基化更具选择性,而LS1、LS3和LS4催化的反应也产生低聚果糖。这项研究显示了LSs在酚类化合物和碳水化合物的糖基化中的应用潜力。
    This study characterizes the acceptor specificity of levansucrases (LSs) from Gluconobacter oxydans (LS1), Vibrio natriegens (LS2), Novosphingobium aromaticivorans (LS3), and Paraburkholderia graminis (LS4) using sucrose as fructosyl donor and selected phenolic compounds and carbohydrates as acceptors. Overall, V. natriegens LS2 proved to be the best biocatalyst for the transfructosylation of phenolic compounds. More than one fructosyl unit could be attached to fructosylated phenolic compounds. The transfructosylation of epicatechin by P. graminis LS4 resulted in the most diversified products, with up to five fructosyl units transferred. In addition to the LS source, the acceptor specificity of LS towards phenolic compounds and their transfructosylation products were found to greatly depend on their chemical structure: the number of phenolic rings, the reactivity of hydroxyl groups and the presence of aliphatic chains or methoxy groups. Similarly, for carbohydrates, the transfructosylation yield was dependent on both the LS source and the acceptor type. The highest yield of fructosylated-trisaccharides was Erlose from the transfructosylation of maltose catalyzed by LS2, with production reaching 200 g/L. LS2 was more selective towards the transfructosylation of phenolic compounds and carbohydrates, while reactions catalyzed by LS1, LS3 and LS4 also produced fructooligosaccharides. This study shows the high potential for the application of LSs in the glycosylation of phenolic compounds and carbohydrates.
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  • 文章类型: Journal Article
    2-O-α-D-吡喃葡萄糖基-L-抗坏血酸(AA-2G)是L-抗坏血酸(L-AA)的稳定衍生物,已广泛应用于食品和化妆品行业。糖分子,例如在AA-2G合成过程中由环糊精糖基转移酶(CGTase)产生的葡萄糖和麦芽糖可能与L-AA竞争作为受体,导致低AA-2G产量。多序列比对结合结构模拟分析表明CGTase位置191和255处的残基可能是底物特异性差异的原因。为了研究这两个残基对受体偏好和AA-2G产率的影响,五个单突变体BsF191Y,BsF255Y,BcY195F,来自嗜热脂肪芽孢杆菌NO2(Bs)的三种CGTase的PmY195F和PmY260F,设计了用于AA-2G合成的环状芽孢杆菌251(Bc)和拟状芽孢杆菌(Pm)。在最优条件下,突变体BsF191Y和BsF255YAA-2G的AA-2G产量比BsCGTase低34.3%和7.9%,分别。BcY195F突变体的AA-2G产量,PmY195F和PmY260F为45.8%,比野生型CGTases高36.9%和12.6%,分别。动力学研究表明,在位置191和255的三个CGTase的残基是F,这降低了葡萄糖和麦芽糖的特异性,增加了L-AA的特异性。这项研究不仅首次提出AA-2G产量可以通过削弱CGTase对糖副产物的受体特异性来提高。同时也为催化双底物转糖基反应的CGTase修饰提供了新的见解。
    2-O-α-D-glucopyranosyl-L-ascorbic acid (AA-2G) is a stable derivative of L-ascorbic acid (L-AA), which has been widely used in food and cosmetics industries. Sugar molecules, such as glucose and maltose produced by cyclodextrin glycosyltransferase (CGTase) during AA-2G synthesis may compete with L-AA as the acceptors, resulting in low AA-2G yield. Multiple sequence alignment combined with structural simulation analysis indicated that residues at positions 191 and 255 of CGTase may be responsible for the difference in substrate specificity. To investigate the effect of these two residues on the acceptor preference and the AA-2G yield, five single mutants Bs F191Y, Bs F255Y, Bc Y195F, Pm Y195F and Pm Y260F of three CGTases from Bacillus stearothermophilus NO2 (Bs), Bacillus circulans 251 (Bc) and Paenibacillus macerans (Pm) were designed for AA-2G synthesis. Under optimal conditions, the AA-2G yields of the mutants Bs F191Y and Bs F255Y AA-2G were 34.3% and 7.9% lower than that of Bs CGTase, respectively. The AA-2G yields of mutant Bc Y195F, Pm Y195F and Pm Y260F were 45.8%, 36.9% and 12.6% higher than those of wild-type CGTases, respectively. Kinetic studies revealed that the residues at positions 191 and 255 of the three CGTases were F, which decreased glucose and maltose specificity and increased L-AA specificity. This study not only proposes for the first time that the AA-2G yield can be improved by weakening the acceptor specificity of CGTase toward sugar byproducts, but also provides new insight on the modification of CGTase that catalyze the double-substrate transglycosylation reaction.
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  • 文章类型: Journal Article
    从基本观点和实际应用来看,了解酶特异性的机制越来越重要。由于其在体内和体外改善受体底物的功能特性方面的重要性,转糖基化引起了许多关注。环糊精葡聚糖转移酶(CGTase)是转糖基化的关键酶之一。它具有广泛的底物谱,并利用糖作为供体。然而,对CGTase的受体选择性知之甚少,这极大地阻碍了合理设计所需的转糖基化衍生物的努力。在这项研究中,我们发现来自环状芽孢杆菌的CGTase,BcCGTase,能够与多种人参皂苷形成糖基化产物。特别是,它不仅进行不同的单一,di-,甚至通过将葡萄糖部分转移到COGlc位置进行更高阶的糖基化,还可以糖基化人参皂苷的C3-OH位置。相比之下,地衣芽孢杆菌的另一种CGTase(BlCGTase)显示出相对特定的受体偏好,只有几种人参皂苷。BcCGTase和BlCGTase之间的结构比较表明,BcCGTase/BlCGTase受体结合位点内的Arg74/K81位置是人参皂苷F1催化特异性差异的原因。进一步的诱变证实了它们在受体选择中的作用。总之,我们的研究不仅证明了CGTases的受体选择性,而且还提供了对CGTases催化机理的见解,这将潜在地增加CGTase生物合成新的,合理设计的转糖基化衍生物。
    Understanding the mechanisms of enzyme specificity is increasingly important from a fundamental viewpoint and for practical applications. Transglycosylation has attracted many attentions due to its importance in improving the functional properties of acceptor substrates both in vivo and in vitro. Cyclodextrin glucanotransferase (CGTase) is one of the key enzymes in transglycosylation, it has a broad substrate spectrum and utilizes sugar as the donor. However, little is known about the acceptor selectivity of CGTase, which greatly hampers efforts toward the rational design of desirable transglycosylated derivatives. In this study, we found that the CGTase from Bacillus circulans, BcCGTase, was able to form glycosylated products with diverse ginsenosides. In particular, it not only carries out diverse mono-, di-, and even higher-order glycosylations via the transfer of glucose moieties to the COGlc positions, but also can glycosylate the C3-OH position of ginsenosides. In contrast, another CGTase from Bacillus licheniformis (BlCGTase) showed relatively specific acceptor preference with only several ginsenosides. Structural comparison between BcCGTase and BlCGTase revealed that the Arg74/K81 position within the acceptor-binding sites of BcCGTase/BlCGTase was responsible for the differences in catalytic specificity for ginsenoside F1. Further mutagenesis confirmed their roles in the acceptor selection. In conclusion, our study not only demonstrates the acceptor selectivity of CGTases, but also provides insight into the catalytic mechanism of CGTases, which will potentially increase the utility of CGTase for biosynthesis of new, rationally designed transglycosylated derivatives.
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  • 文章类型: Journal Article
    The synthesis of complex oligosaccharides is desired for their potential as prebiotics, and their role in the pharmaceutical and food industry. Levansucrase (LS, EC 2.4.1.10), a fructosyl-transferase, can catalyze the synthesis of these compounds. LS acquires a fructosyl residue from a donor molecule and performs a non-Lenoir transfer to an acceptor molecule, via β-(2→6)-glycosidic linkages. Genome mining was used to uncover new LS enzymes with increased transfructosylating activity and wider acceptor promiscuity, with an initial screening revealing five LS enzymes. The product profiles and activities of these enzymes were examined after their incubation with sucrose. Alternate acceptor molecules were also incubated with the enzymes to study their consumption. LSs from Gluconobacter oxydans and Novosphingobium aromaticivorans synthesized fructooligosaccharides (FOSs) with up to 13 units in length. Alignment of their amino acid sequences and substrate docking with homology models identified structural elements causing differences in their product spectra. Raffinose, over sucrose, was the preferred donor molecule for the LS from Vibrio natriegens, N. aromaticivorans, and Paraburkolderia graminis. The LSs examined were found to have wide acceptor promiscuity, utilizing monosaccharides, disaccharides, and two alcohols to a high degree.
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  • 文章类型: Journal Article
    The transglycosylation activity of amylosucrase (ASase) has received significant attention owing to its use of an inexpensive donor, sucrose, and broad acceptor specificity, including glycone and aglycone compounds. The transglycosylation reaction of recombinant ASase from Deinococcus radiopugnans (DRpAS) was investigated using various phenolic compounds, and quercetin-3-O-rutinoside (rutin) was found to be the most suitable acceptor molecule used by DRpAS. Two amino acid residues in DRpAS variants (DRpAS Q299K and DRpAS Q299R), assumed to be involved in acceptor binding, were constructed by site-directed mutagenesis. Intriguingly, DRpAS Q299K and DRpAS Q299R produced 10-fold and 4-fold higher levels of rutin transglycosylation product than did the wild-type (WT) DRpAS, respectively. According to in silico molecular docking analysis, the lysine residue at position 299 in the mutants enables rutin to more easily position inside the active pocket of the mutant enzyme than in that of the WT, due to conformational changes in loop 4.
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  • 文章类型: Journal Article
    Maple syrups with selected degree Brix (°Bx) (15, 30, 60) were investigated as reaction systems for levansucrase from Bacillus amyloliquefaciens. The enzymatic conversion of sucrose present in the maple syrup and the production of the transfructosylation products were assessed over a time course of 48h. At 30°C, the use of maple syrup 30°Bx led to the highest levansucrase activity (427.53μmol/mg protein/min), while maple syrup 66°Bx led to the highest converted sucrose concentration (1.53M). In maple syrup 30°Bx, oligolevans (1080%). In maple syrup 66°Bx, the most abundant products were oligolevans at 30°C and levans (DP≥30) at 8°C. The acceptor specificity study revealed the ability of B. amyloliquefaciens levansucrase to synthesize a variety of hetero-fructooligosaccharides (FOSs) in maple syrups 15°Bx and 30°Bx enriched with various disaccharides, with lactose being the preferred fructosyl acceptor. The current study is the first to investigate maple-syrup-based reaction systems for the synthesis of FOSs/oligolevans/levans.
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  • 文章类型: Journal Article
    Streptococcus mutans dextran glucosidase (SmDG) belongs to glycoside hydrolase family 13, and catalyzes both the hydrolysis of substrates such as isomaltooligosaccharides and subsequent transglucosylation to form α-(1→6)-glucosidic linkage at the substrate non-reducing ends. Here, we report the 2.4Å resolution crystal structure of glucosyl-enzyme intermediate of SmDG. In the obtained structure, the Trp238 side-chain that constitutes the substrate-binding site turned away from the active pocket, concurrently with conformational changes of the nucleophile and the acid/base residues. Different conformations of Trp238 in each reaction stage indicated its flexibility. Considering the results of kinetic analyses, such flexibility may reflect a requirement for the reaction mechanism of SmDG.
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  • 文章类型: Journal Article
    The production of levansucrase (LS) by thermophilic Geobacillus stearothermophilus was investigated. LS production was more effective in the presence of sucrose (1%, w/v) than fructose, glucose, glycerol or raffinose. The results (Top 57°C; stable for 6 h at 47°C) indicate the high stability of the transfructosylation activity of G. stearothermophilus LS as compared with LSs from other microbial sources. Contrary to temperature, the pH had a significant effect on the selectivity of G. stearothermophilus LS-catalyzed reaction, favoring the transfructosylation reaction in the pH range of 6.0-6.5. The kinetic parameter study revealed that the catalytic efficiency of transfructosylation activity was higher as compared with the hydrolytic one. In addition to levan, G. stearothermophilus LS synthesized fructooligosaccharides in the presence of sucrose as the sole substrate. The results also demonstrated the wide acceptor specificity of G. stearothermophilus LS with maltose being the best fructosyl acceptor. This study is the first on the catalytic properties and the acceptor specificity of LS from G. stearothermophilus.
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  • 文章类型: Journal Article
    纤维二糖磷酸化酶(EC2.4.1.20,CBP)催化纤维二糖可逆磷酸化为α-D-葡萄糖1-磷酸(Glc1P)和d-葡萄糖。来自白乳球菌的CBP的Cys485,Tyr648和Glu653,位于+1子站点,突变以调节受体特异性。C485A,Y648F,Y648V的活性足以用于分析。基于在IOmMGlc1P存在下测定的表观动力学参数,将它们的受体特异性与野生型进行比较。C485A对D-葡糖胺的偏好高于野生型。Y648F对D-甘露糖和2-脱氧-D-葡萄糖的表观kcat/Km值比野生型高8.2倍和4.0倍,分别。Y648V对N-乙酰-D-葡糖胺具有合成活性,而其他变体则没有。比较在相同浓度的野生型和每种突变体存在下的寡糖生产。C485A以与野生型相似的速率从10mMGlc1P和D-葡糖胺产生4-O-β-D-吡喃葡萄糖基-D-葡糖胺。Y648F和Y648V产生4-O-β-D-吡喃葡萄糖基-D-甘露糖和4-O-β-D-吡喃葡萄糖基-N-乙酰基-D-葡糖胺的速度比野生型快得多,分别。反应4h后,Y648F和Y648V产生的4-O-β-D-吡喃葡萄糖基-D-甘露糖和4-O-β-D-吡喃葡萄糖基-N-乙酰基-D-葡糖胺的量比野生型高5.9-和12-倍,分别。
    Cellobiose phosphorylase (EC 2.4.1.20, CBP) catalyzes the reversible phosphorolysis of cellobiose to α-D-glucose 1-phosphate (Glc1P) and d-glucose. Cys485, Tyr648, and Glu653 of CBP from Ruminococcus albus, situated at the +1 subsite, were mutated to modulate acceptor specificity. C485A, Y648F, and Y648V were active enough for analysis. Their acceptor specificities were compared with the wild type based on the apparent kinetic parameters determined in the presence of 10 mM Glc1P. C485A showed higher preference for D-glucosamine than the wild type. Apparent kcat/Km values of Y648F for D-mannose and 2-deoxy-D-glucose were 8.2- and 4.0-fold higher than those of the wild type, respectively. Y648V had synthetic activity toward N-acetyl-D-glucosamine, while the other variants did not. The oligosaccharide production in the presence of the same concentrations of wild type and each mutant was compared. C485A produced 4-O-β-D-glucopyranosyl-D-glucosamine from 10 mM Glc1P and D-glucosamine at a rate similar to the wild type. Y648F and Y648V produced 4-O-β-D-glucopyranosyl-D-mannose and 4-O-β-D-glucopyranosyl-N-acetyl-D-glucosamine much more rapidly than the wild type when D-mannose and N-acetyl-D-glucosamine were used as acceptors, respectively. After a 4h reaction, the amounts of 4-O-β-D-glucopyranosyl-D-mannose and 4-O-β-D-glucopyranosyl-N-acetyl-D-glucosamine produced by Y648F and Y648V were 5.9- and 12-fold higher than the wild type, respectively.
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