API, Application Programming Interface

API,应用程序编程接口
  • 文章类型: Journal Article
    UNASSIGNED:使用OCT和OCT血管造影(OCTA)评估基于深度神经网络的视网膜微血管分割和相关糖尿病视网膜病变(RDR)分类的联合学习框架的性能。
    UNASSIGNED:对照参与者和糖尿病患者的临床OCT和OCTA扫描的回顾性分析。
    UNASSIGNED:用于微血管分割的153张OCTAen面部图像是从4台OCT仪器获得的,其视野范围为2×2-mm至6×6-mm。用于RDR分类的700只眼睛包括从2个商用OCT系统获得的OCTA正面图像和结构OCT投影。
    UNASSIGNED:用于微血管分割的OCT血管造影图像由视网膜专家手动描绘并验证。糖尿病视网膜病变(DR)的严重程度由视网膜专家评估,并归纳为2类:非RDR和RDR。通过使用4个客户端进行微血管分割的仿真演示了联合学习配置,并与其他协作训练方法进行了比较。随后,将联合学习应用于多个机构进行RDR分类,并将其与来自同一机构(内部模型)和不同机构(外部模型)的数据进行训练和测试的模型进行比较。
    未经鉴定:对于微血管分割,我们测量了精度和骰子相似系数(DSC)。对于严重性分类,我们测量了准确度,接收器工作特性曲线下面积(AUROC),精确率-召回率曲线下的面积,平衡精度,F1得分,灵敏度,和特异性。
    UNASSIGNED:对于这两个应用程序,联合学习取得了与内部模型相似的性能。具体来说,对于微血管分割,联邦学习模型实现了类似的性能(所有测试集的平均DSC,0.793)作为在完全集中的数据集上训练的模型(平均DSC,0.807)。对于RDR分类,联合学习的平均AUROC为0.954和0.960;内部模型的平均AUROC为0.956和0.973。类似的结果反映在其他计算的评估度量中。
    UNASSIGNED:联合学习在分割和分类应用中显示出与传统深度学习相似的结果,同时保持数据隐私。评估指标突出了协作学习增加领域多样性的潜力以及用于OCT数据分类的模型的可泛化性。
    UNASSIGNED: To evaluate the performance of a federated learning framework for deep neural network-based retinal microvasculature segmentation and referable diabetic retinopathy (RDR) classification using OCT and OCT angiography (OCTA).
    UNASSIGNED: Retrospective analysis of clinical OCT and OCTA scans of control participants and patients with diabetes.
    UNASSIGNED: The 153 OCTA en face images used for microvasculature segmentation were acquired from 4 OCT instruments with fields of view ranging from 2 × 2-mm to 6 × 6-mm. The 700 eyes used for RDR classification consisted of OCTA en face images and structural OCT projections acquired from 2 commercial OCT systems.
    UNASSIGNED: OCT angiography images used for microvasculature segmentation were delineated manually and verified by retina experts. Diabetic retinopathy (DR) severity was evaluated by retinal specialists and was condensed into 2 classes: non-RDR and RDR. The federated learning configuration was demonstrated via simulation using 4 clients for microvasculature segmentation and was compared with other collaborative training methods. Subsequently, federated learning was applied over multiple institutions for RDR classification and was compared with models trained and tested on data from the same institution (internal models) and different institutions (external models).
    UNASSIGNED: For microvasculature segmentation, we measured the accuracy and Dice similarity coefficient (DSC). For severity classification, we measured accuracy, area under the receiver operating characteristic curve (AUROC), area under the precision-recall curve, balanced accuracy, F1 score, sensitivity, and specificity.
    UNASSIGNED: For both applications, federated learning achieved similar performance as internal models. Specifically, for microvasculature segmentation, the federated learning model achieved similar performance (mean DSC across all test sets, 0.793) as models trained on a fully centralized dataset (mean DSC, 0.807). For RDR classification, federated learning achieved a mean AUROC of 0.954 and 0.960; the internal models attained a mean AUROC of 0.956 and 0.973. Similar results are reflected in the other calculated evaluation metrics.
    UNASSIGNED: Federated learning showed similar results to traditional deep learning in both applications of segmentation and classification, while maintaining data privacy. Evaluation metrics highlight the potential of collaborative learning for increasing domain diversity and the generalizability of models used for the classification of OCT data.
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  • 文章类型: Journal Article
    Drug repurposing has become a widely used strategy to accelerate the process of finding treatments. While classical de novo drug development involves high costs, risks, and time-consuming paths, drug repurposing allows to reuse already-existing and approved drugs for new indications. Numerous research has been carried out in this field, both in vitro and in silico. Computational drug repurposing methods make use of modern heterogeneous biomedical data to identify and prioritize new indications for old drugs. In the current paper, we present a new complete methodology to evaluate new potentially repurposable drugs based on disease-gene and disease-phenotype associations, identifying significant differences between repurposing and non-repurposing data. We have collected a set of known successful drug repurposing case studies from the literature and we have analysed their dissimilarities with other biomedical data not necessarily participating in repurposing processes. The information used has been obtained from the DISNET platform. We have performed three analyses (at the genetical, phenotypical, and categorization levels), to conclude that there is a statistically significant difference between actual repurposing-related information and non-repurposing data. The insights obtained could be relevant when suggesting new potential drug repurposing hypotheses.
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  • 文章类型: Journal Article
    风能行业在过去十年中已经看到了增长,预计这将在未来几年继续。这对熟练和有准备的专业人员提出了一些挑战,这些专业人员在不断变化的行业中始终保持最新状态。因此,教学工具已经获得了越来越多的兴趣。本研究回顾了数字交互式培训工具方面的最新技术,指出现有选项不具有用户参与培训材料开发的特点。因此,本文的主要目的是开发和测试一种基于游戏化的创新方法,以提高风能部门的工业技能,以一种新的用户友好软件的形式提供数字交互环境,该软件可以允许其用户培训并为教学内容做出贡献。第一个方法步骤涉及战略实施和发展阶段所需的相关背景研究,包括市场分析和技术权衡,以及软件设计的总体结构和实现步骤。获得的结果指出,在最少使用基于Web的数据库和网络连接的情况下,手机应用程序可以以时间计分的测验应用程序的形式工作,风能农场的远程工作人员可以从中受益。这项研究带来的技术创新将大大改善培训服务,允许更具活力的形成性管理,有助于提高竞争力,并为整个行业迈出卓越的一步。
    The wind energy sector has seen an increasing growth in the last decade and this is foreseen to continue in the next years. This has posed several challenges in terms of skilled and prepared professionals that have always to be up to date in an industry that is constantly changing. Thus, teaching tools have gained an increasing interest. The present research reviewed the state of the art in terms of digital interactive training tools pinpointing that the existing options do not feature the user involvement in the development of the training material. Hence, the main aim of this paper is to develop and test an innovative method based on gamification to increase wind energy sector industrial skills, providing a digital interactive environment in the form of a new user-friendly software that can allow its users to train and contribute to the teaching and learning contents. The first methodological step deals with the associated background studies that were required at strategy implementation and development stages, including market analysis and technology trade-offs, as well as the general structure and the implementation steps of the software design. Obtained results pinpointed that with minimal use of web-based database and network connectivity, a mobile phone application could work in the form of a time-scored quiz application that remotely located staff at wind energy farms could benefit from. The technological innovation brought by this research will substantially improve the service of training, allowing a more dynamic formative management contributing to an improvement in the competitiveness and a step towards excellence for the whole sector.
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  • 文章类型: Journal Article
    中风后抑郁(PSD)是一种神经精神后遗症,对中风患者的预后造成严重的不利影响。我们开发的iPad应用程序是一种非常创新的方法,旨在通过在视频中呈现积极的词语刺激来改善参与者的抑郁症状。尽管这种应用的副作用比现有的药理学和非药理学干预措施少,并且对患者和护理人员的负担可能较小,其对PSD的疗效尚未研究。在这里,我们提出了一个试点随机对照试验(RCT)方案,以研究这种应用干预对PSD患者的治疗潜力。
    这项研究设计为5周,单中心,开放标签,平行组,飞行员RCT。32名PSD患者将被随机分配到iPad应用程序和常规康复或常规康复的组合(分配比例为1:1)。iPad应用程序干预每天持续3分钟,通常的康复每天持续3小时。主要结果是5周干预结束时流行病学研究中心抑郁量表评分相对于基线的变化。
    这项试点RCT是第一项研究,旨在研究iPad应用干预措施减轻PSD患者抑郁症状的潜力。该试点RCT确定这是否是可行和有效的干预措施,并为全面试验的设计提供信息。如果我们的假设是正确的,该试验可为增强iPad应用干预措施改善PSD患者抑郁症状的标准实践提供证据.
    BACKGROUND: Post-stroke depression (PSD) is a neuropsychiatric sequela that causes serious adverse effects on the prognosis of stroke patients. Our developed iPad application is a very innovative approach designed to improve participants\' depressive symptoms by presenting positive words stimuli in a video. Although this application has fewer side effects than existing pharmacological and non-pharmacological interventions and is likely less burdensome for patients and caregivers, its efficacy for PSD has not been investigated. Here we present a pilot randomized controlled trial (RCT) protocol to investigate the therapeutic potential of this application intervention for PSD patients.
    METHODS: This study is designed as a 5-week, single-center, open-label, parallel-group, pilot RCT. Thirty-two patients with PSD will be randomly assigned to a combination of the iPad application and usual rehabilitation or usual rehabilitation alone (1:1 allocation ratio). The iPad application intervention lasts 3 min a day, and the usual rehabilitation lasts 3 h a day. The primary outcome is the change from baseline in The Center for Epidemiologic Studies Depression Scale score at the end of the 5-week intervention.
    CONCLUSIONS: This pilot RCT is the first study to investigate the potential of iPad application interventions to reduce depressive symptoms in PSD patients. This pilot RCT determines whether this is a viable and effective intervention and informs the design for a full-scale trial. If our hypothesis is correct, this trial can provide evidence to augment the standard practice of iPad application interventions to improve depressive symptoms in patients with PSD.
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  • 文章类型: Journal Article
    纳米技术已经使得能够发现与它们的本体类似物相比具有独特的物理化学(PChem)性质的多种新型材料。这些特性导致了迅速增加的商业应用范围;这,然而,可能是有代价的,如果与长期健康和环境风险的关联被发现,甚至只是被感知。许多纳米材料(NMs)尚未完全评估其潜在的不利生物学影响。由于与实验评估相关的成本和时间限制,经常涉及动物。这里,分析了可用的NM库是否适合与新型纳米信息学方法集成,以及开发用于人类和环境风险评估的NM特定集成测试和评估方法(IATA)。都在NanoSolveIT云平台内。这些建立和良好表征的NM文库(例如NanoMILE,NanoSolutions,纳诺雷格,NanoFASE,calibrate,NanoTEST和纳米材料注册(>2000NMs))包含物理化学表征数据以及几个相关生物学终点的数据,部分使用统一的经济合作与发展组织(OECD)方法和测试指南进行评估。将如此广泛的NM信息源与最新的纳米信息学方法集成,将使NanoSolveIT能够对NM结构(形态)之间的关系进行建模,属性及其不利影响,并预测可用数据较少的其他NM的影响。该项目专门针对监管机构和行业的需求,以有效和快速地评估暴露,纳米材料和纳米功能产品的NM危害和风险,实现计算“按设计安全”方法的实施,以促进NM商业化。
    Nanotechnology has enabled the discovery of a multitude of novel materials exhibiting unique physicochemical (PChem) properties compared to their bulk analogues. These properties have led to a rapidly increasing range of commercial applications; this, however, may come at a cost, if an association to long-term health and environmental risks is discovered or even just perceived. Many nanomaterials (NMs) have not yet had their potential adverse biological effects fully assessed, due to costs and time constraints associated with the experimental assessment, frequently involving animals. Here, the available NM libraries are analyzed for their suitability for integration with novel nanoinformatics approaches and for the development of NM specific Integrated Approaches to Testing and Assessment (IATA) for human and environmental risk assessment, all within the NanoSolveIT cloud-platform. These established and well-characterized NM libraries (e.g. NanoMILE, NanoSolutions, NANoREG, NanoFASE, caLIBRAte, NanoTEST and the Nanomaterial Registry (>2000 NMs)) contain physicochemical characterization data as well as data for several relevant biological endpoints, assessed in part using harmonized Organisation for Economic Co-operation and Development (OECD) methods and test guidelines. Integration of such extensive NM information sources with the latest nanoinformatics methods will allow NanoSolveIT to model the relationships between NM structure (morphology), properties and their adverse effects and to predict the effects of other NMs for which less data is available. The project specifically addresses the needs of regulatory agencies and industry to effectively and rapidly evaluate the exposure, NM hazard and risk from nanomaterials and nano-enabled products, enabling implementation of computational \'safe-by-design\' approaches to facilitate NM commercialization.
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  • 文章类型: Journal Article
    The Lipid Annotation Service (LAS) is a representational state transfer (REST) application programming interface (API) service designed to aid researchers performing lipid annotation. It assigns certainty levels (very unlikely, unlikely, likely, and very likely) to the putative annotations received as input and explains the rationale of such assignments. Its rules, obtained from the Centre for Metabolomics and Bioanalysis (CEMBIO) and from a literature review, enable LAS to extract evidence to support or refute the annotations automatically by checking the inter-rule relationships. LAS is the first metabolite annotation tool capable of explaining in natural language (English) the evidence that supports or refutes the annotations. This facilitates the understanding of the results by the user and, thus, increases the user\'s confidence in the results. Concerning its performance, in an evaluation of blood plasma samples whose compounds had previously been identified using well-established standards, LAS yielded an F-measure higher than 80%.
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  • 文章类型: Journal Article
    几十年来,中等强度连续训练(MICT)一直是心脏康复(CR)运动处方的基石.高强度间歇训练(HIIT)现在在CR运动指南中被认为是改善心肺健康的适当和有效的方式。死亡率的强有力预测指标。然而,HIIT在真实世界CR环境中的临床应用,在可行性方面,安全,和长期坚持,需要进一步调查以解决正在进行的保留。此外,使用运动强度(如心率;HR)的客观测量的研究产生了不同的结果.因此,我们建议调查使用主观措施(例如感知劳累程度(RPE))来规定运动强度。
    参加医院启动的CR计划的一百名患有冠状动脉疾病(CAD)的成年人将被随机分配到1)HIIT:4×4分钟高强度间隔,以15-18RPE穿插3分钟的主动恢复期或2)MICT:常规护理运动,包括40分钟的中等强度连续运动,相当于11-13RPE。主要结果是4周运动训练后运动能力(峰值VO2)的变化。次要结果指标是:可行性,安全,坚持锻炼,身体成分,血管功能,炎症标志物,肝内脂质,能量摄入,和饮食行为超过12个月;和内脏脂肪组织(增值税)后12周的运动训练。
    本研究旨在解决有关HIIT在CR计划中的实用性和安全性的持续关注。我们预计研究结果将导致标准化方案的开发,以促进CR计划将HIIT纳入适当患者的标准运动选择。
    UNASSIGNED: For decades, moderate intensity continuous training (MICT) has been the cornerstone of exercise prescription for cardiac rehabilitation (CR). High intensity interval training (HIIT) is now recognized in CR exercise guidelines as an appropriate and efficient modality for improving cardiorespiratory fitness, a strong predictor of mortality. However, the clinical application of HIIT in a real world CR setting, in terms of feasibility, safety, and long-term adherence, needs further investigation to address ongoing reservations. Furthermore, studies using objective measures of exercise intensity (such as heart rate; HR) have produced variable outcomes. Therefore we propose investigating the use of subjective measures (such as rating of perceived exertion (RPE)) for prescribing exercise intensity.
    UNASSIGNED: One hundred adults with coronary artery disease (CAD) attending a hospital-initiated CR program will be randomized to 1) HIIT: 4 × 4 min high intensity intervals at 15-18 RPE interspersed with 3-min active recovery periods or 2) MICT: usual care exercise including 40 min continuous exercise at a moderate intensity corresponding to 11-13 RPE. Primary outcome is change in exercise capacity (peak VO2) following 4 weeks of exercise training. Secondary outcome measures are: feasibility, safety, exercise adherence, body composition, vascular function, inflammatory markers, intrahepatic lipid, energy intake, and dietary behavior over 12-months; and visceral adipose tissue (VAT) following 12 weeks of exercise training.
    UNASSIGNED: This study aims to address the ongoing concerns regarding the practicality and safety of HIIT in CR programs. We anticipate study findings will lead to the development of a standardized protocol to facilitate CR programs to incorporate HIIT as a standard exercise option for appropriate patients.
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