Lake sediments

湖泊沉积物
  • 文章类型: Journal Article
    最后一次冰川终止期间的全球变暖被千年规模的凉爽间隔所打断,例如年轻的树干和南极冷逆转(ACR)。尽管这些事件在高纬度地区具有良好的特征,它们在低纬度地区的影响鲜为人知。我们使用应用于LagunaLlaviucu沉积物核心的有机地球化学代理,提供了过去〜16,800年的热带安第斯山脉的高分辨率温度和水文气候记录,厄瓜多尔。我们的水文气候记录与亚马逊西部以及安第斯山脉东部和中部的记录一致,表明南端夏季日照变化对南美夏季季风强度的长期影响。我们的温度记录表明在冰川终止期间约4°C的变暖,在全新世早期到中期的稳定温度,轻微的,自6000年前开始逐渐变暖。重要的是,我们观察到与ACR重合的~1.5°C冷反转。这些数据记录了热带安第斯山脉冰川消退期间的温度变化模式,类似于南方高纬度地区的温度,被认为是由大气温室气体的辐射强迫和大西洋子午线翻转环流引起的海洋热量传输变化所控制的。
    Global warming during the Last Glacial Termination was interrupted by millennial-scale cool intervals such as the Younger Dryas and the Antarctic Cold Reversal (ACR). Although these events are well characterized at high latitudes, their impacts at low latitudes are less well known. We present high-resolution temperature and hydroclimate records from the tropical Andes spanning the past ~16,800 y using organic geochemical proxies applied to a sediment core from Laguna Llaviucu, Ecuador. Our hydroclimate record aligns with records from the western Amazon and eastern and central Andes and indicates a dominant long-term influence of changing austral summer insolation on the intensity of the South American Summer Monsoon. Our temperature record indicates a ~4 °C warming during the glacial termination, stable temperatures in the early to mid-Holocene, and slight, gradual warming since ~6,000 y ago. Importantly, we observe a ~1.5 °C cold reversal coincident with the ACR. These data document a temperature change pattern during the deglaciation in the tropical Andes that resembles temperatures at high southern latitudes, which are thought to be controlled by radiative forcing from atmospheric greenhouse gases and changes in ocean heat transport by the Atlantic meridional overturning circulation.
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  • 文章类型: Journal Article
    许多企鹅可以将具有抗生素抗性基因(ARGs)的病原体传播到南极洲。然而,通过鸟粪沉积,企鹅传播对湖泊ARG的影响仍然很少受到关注。这里,我们已经对来自南极洲16个湖泊的企鹅鸟粪(OLS)和非鸟源性沉积物(NOLS)的鸟源性沉积物中的ARG进行了分析。在所有沉积物样本中共检测到191种ARGs,OLS的丰度和多样性比NOLS高得多。令人惊讶的是,在OLS中发现了高度多样化和丰富的ARG,检测频率>40%,绝对丰度为(2.34×109)-(4.98×109)拷贝g-1,与沿海河口沉积物和养猪场相当。确定的抗性基因与企鹅鸟粪输入量的强相关性,环境因素,移动遗传元素,和细菌群落,结合网络和冗余分析,都表明企鹅是通过鸟粪沉积在湖泊沉积物中传播和高度富集ARGs的原因,这可能会大大超过当地人类活动的影响。我们的研究结果表明,ARGs可以通过企鹅的迁徙进入南极洲的湖泊,食物链,和鸟粪沉积,这与全球范围内广泛的ARGs污染密切相关。
    Numerous penguins can propagate pathogens with antibiotic resistance genes (ARGs) into Antarctica. However, the effects of penguin dissemination on the lake ARGs still have received little attention via guano deposition. Here, we have profiled ARGs in ornithogenic sediments subject to penguin guano (OLS) and nonornithogenic sediments (NOLS) from 16 lakes across Antarctica. A total of 191 ARGs were detected in all sediment samples, with a much higher abundance and diversity in OLS than in NOLS. Surprisingly, highly diverse and abundant ARGs were found in the OLS with a detection frequency of >40% and an absolute abundance of (2.34 × 109)-(4.98 × 109) copies g-1, comparable to those in coastal estuarine sediments and pig farms. The strong correlations of identified resistance genes with penguin guano input amount, environmental factors, mobile genetic elements, and bacterial community, in conjunction with network and redundancy analyses, all indicated that penguins were responsible for the dissemination and high enrichment of ARGs in lake sediments via the guano deposition, which might greatly outweigh local human-activity effects. Our results revealed that ARGs could be carried into lakes across the Antarctica through penguin migration, food chains, and guano deposition, which were closely connected with the widespread pollution of ARGs at the global scale.
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  • 文章类型: Journal Article
    微生物在采煤沉陷区水生生态系统的生物地球化学循环中起着催化剂的作用。尽管它们很重要,随着矿山年龄的增加,微生物群落的演替,特别是在不同的栖息地,基于系统发育的社区组装机制的变化还没有得到很好的理解。为了解决这个知识差距,我们从湖泊沉积物中采集了72个样本,水,和周围的表土(0-20厘米)在不同的采矿阶段(早期:16年,中间:31岁,后期:40年)。我们使用16SrRNA基因测序和多变量统计方法分析了这些样品,以探索细菌群落的动力学和组装机制。我们的发现表明,沉积物中磷和有机质的增加,与采矿年龄相关,显著增强细菌α多样性,同时降低物种丰富度(P<0.001)。同质化选择(49.9%)促进物种异步互补,增强细菌群落代谢硫的能力,磷,和有机物,导致更复杂稳定的共生网络。在土壤中,升高的氮和有机碳水平显着影响细菌群落组成(AdonisR2=0.761),但没有显著改变丰富度或多样性(P>0.05)。湖泊与周围土壤的高度连通性导致大量物种漂移和有机质积累,从而增加后期细菌丰富度(P<0.05),增强代谢溶解有机物的能力,包括类腐殖质,富里酸,和类似蛋白质的物质。土壤细菌群落的组装主要受随机过程(79.0%)的支配,物种漂移(35.8%)在广泛的空间尺度上显着塑造了这些群落,也影响水细菌群落。然而,水细菌群落组装主要由随机过程驱动(51.2%),受栖息地质量的影响很大(47.6%)。这项研究为采煤沉陷水域内微生物群落多样性的演变提供了全面的见解,对加强这些生态系统的环境管理和保护战略具有重要意义。
    Microorganisms play a pivotal role as catalysts in the biogeochemical cycles of aquatic ecosystems within coal mining subsidence areas. Despite their importance, the succession of microbial communities with increasing mine age, particularly across different habitats, and variations in phylogenetically-based community assembly mechanisms are not well understood. To address this knowledge gap, we collected 72 samples from lake sediments, water, and surrounding topsoil (0-20 cm) at various mining stages (early: 16 years, middle: 31 years, late: 40 years). We analyzed these samples using 16S rRNA gene sequencing and multivariate statistical methods to explore the dynamics and assembly mechanisms of bacterial communities. Our findings reveal that increases in phosphorus and organic matter in sediments, correlating with mining age, significantly enhance bacterial alpha diversity while reducing species richness (P < 0.001). Homogenizing selection (49.9 %) promotes species asynchrony-complementarity, augmenting the bacterial community\'s ability to metabolize sulfur, phosphorus, and organic matter, resulting in more complex-stable co-occurrence networks. In soil, elevated nitrogen and organic carbon levels markedly influence bacterial community composition (Adonis R2 = 0.761), yet do not significantly alter richness or diversity (P > 0.05). The lake\'s high connectivity with surrounding soil leads to substantial species drift and organic matter accumulation, thereby increasing bacterial richness in later stages (P < 0.05) and enhancing the ability to metabolize dissolved organic matter, including humic-like substances, fulvic acids, and protein-like materials. The assembly of soil bacterial communities is largely governed by stochastic processes (79.0 %) with species drift (35.8 %) significantly shaping these communities over a broad spatial scale, also affecting water bacterial communities. However, water bacterial community assembly is primarily driven by stochastic processes (51.2 %), with a substantial influence from habitat quality (47.6 %). This study offers comprehensive insights into the evolution of microbial community diversity within coal mining subsidence water areas, with significant implications for enhancing environmental management and protection strategies for these ecosystems.
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  • 文章类型: Retraction of Publication
    山区湖泊是特别脆弱的生态系统,正在经历与持续的全球变化相关的重要转变。然而,对山区湖泊及其流域的人为影响的历史要长得多,在许多情况下,具有几千年的夏季田园农业。最近,与工业化相关的对原材料和能源的需求不断增长,特别是自19世纪以来加速,意味着人类对山区的影响进一步增加。Cantabrian山脉(西班牙北部)构成了南欧山脉的典型案例,在过去的几千年中,尤其是在过去的两个世纪中,人类遭受了强烈的影响。这里,在过去的千年中,我们重建了该地区的环境动态,特别关注采矿的影响,基于多学科分析(沉积学,生物地球化学,磁化率,硅藻,花粉,来自LagodeLaCueva(43°03\'N,6°06\'W,1550米a.s.l.)。在过去的几个世纪中,土地利用和气候的变化推动了湖泊的动态。可追溯到公元15世纪后期的一次重大火灾导致的森林砍伐事件增加了侵蚀和强烈径流事件的频率,在潮湿和寒冷的小冰河时代的背景下。集水区铁矿开采活动的开始。200年前对湖泊产生了强烈的影响。沉积率显著升高,采矿废物含有赤铁矿和潜在有毒元素(例如铁,Co,As)被冲入湖中。此外,硅藻组合表明,自20世纪初以来的湖泊调节严重改变了自然水文状况,引入了快速的季节性湖泊水位振荡和增加的湖岸侵蚀,水浊度和养分负荷。最近的环境恢复,2006年完成,涉及大量尾矿的重新沉积。尽管由于矿井排水仍然活跃,一些采矿废水仍然到达湖中,修复工程成功地减少了侵蚀率和养分负荷。较低的土地利用强度也有助于自然植被恢复,进一步减少侵蚀。这项研究说明了人类活动(放牧,采矿,水电)和气候变化在定义山区景观随时间变化方面的作用。此外,我们的研究结果强调了古湖泊学研究对定量评估湖泊修复计划有效性的有用性。
    This article has been withdrawn at the request of the editor. The Publisher apologizes for any inconvenience this may cause. The full Elsevier Policy on Article Withdrawal can be found athttps://www.elsevier.com/about/policies/article-withdrawal.
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  • 文章类型: Journal Article
    疏浚富营养化的湖泊沉积物可以改善水质,但它也需要脱水和增值疏浚的材料,以避免浪费资源,如磷。本研究通过实验研究了使用不同电流(20mA,40mA,和60mA)在重力过滤后。脱水性能,水分含量和分布,电化学反应对脱水性能的影响,能源消耗,并分析了金属和磷(P)分布和pH值的变化。结果表明,电渗脱水通过主要消除游离水和部分间隙水来有效减少沉积物质量,降幅从7%到20%不等。最佳持续时间和电流应,然而,被认为是平衡水去除和能源消耗。更高的水分去除与40毫安24小时和60毫安6小时,而使用60mA(0.201kWh/kg水去除)获得的能耗显着低于使用40mA24h(0.473kWh/kg水去除),在欧姆加热的帮助下,导致粘度降低和毛细血管中的水释放。测试条件没有从沉积物中明显提取重金属或P,这可能有助于将去除的水处理回湖中,并将处理后的沉积物用于不同的目的。该技术操作简便,适用于疏浚沉积物的处理,脱水结果与低加压过滤相当,但能耗低。
    Dredging eutrophic lake sediments can improve water quality, but it also requires dewatering and valorizing the dredged material to avoid wasting resources like phosphorus. This study experimentally investigated the basic mechanism and performance of electroosmotic dewatering of 1-L dredged sediments using different electric currents (20 mA, 40 mA, and 60 mA) after gravity filtration. The dewatering performance, moisture content and distribution, effect of electrochemical reaction on dewaterability, energy consumption, and changes in metals and phosphorus (P) distribution and pH values were analyzed. The results indicated that electroosmotic dewatering effectively decreased sediment mass by predominantly eliminating free and a portion of interstitial water, with reductions ranging from 7 to 20%. The optimal duration and current should, however, be considered to balance water removal and energy consumption. Higher moisture removal occurred with 40 mA for 24 h and 60 mA for 6 h, while the energy consumption obtained with 60 mA (0.201 kWh/kg water removed) was significantly lower than that of applying 40 mA for 24 h (0.473 kWh/kg water removed), with the assistance of ohmic heating, resulting in reduced viscosity and water release from capillaries. The tested conditions did not significantly extract heavy metals or P from the sediments, which may facilitate the disposal of the removed water back into the lake and the utilization of the treated sediments for different purposes. This technology is easy to operate and suitable for the treatment of dredged sediments, and the dewatering result is comparable to low pressurized filtration but at low energy consumption.
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  • 文章类型: Journal Article
    青藏高原(TP)由于其极端的居住环境,是人类长期定居最具挑战性的地区之一。了解这种极端环境中人类活动与环境变化的关系具有重要意义,可以为适应未来气候变化提供历史参考。在这项研究中,我们以TP南部的安格伦盆地为例,阐明了自小冰河时代(LIA)以来的关系。在粪便中使用粪便甾烷醇,湖泊和河流表面沉积物,表层土壤,和沉积物核心,我们发现,具体指标S1和S2的成分,表前列腺素,5β-乙基前列腺素和5β-乙基吡啶前列腺素可以反映人口和草食动物的变化,分别。通过比较由晶粒尺寸决定的环境变化,元素,沉降速率,和其他气候记录,解释了人类活动与环境变化之间的关系。我们的结果表明:(I)公元1480-1820年,湖泊沉积物中的粪便甾烷主要来自牲畜,人口很少。相比之下,在1820-2021年的CE,S1的比例和通量一直在不断增加,表明人口显著增长。(ii)在LIA中间,寒冷干燥的气候抑制了农业和农业的发展。然而,LIA后期降水的增加促进了这种发展,导致人口和牲畜在短期内增加。(三)1951年以来,人们开荒,发展畜牧业,导致土壤侵蚀增加。(四)过去40年,在温暖潮湿的气候和良好的政策支持下,人类活动,如农业和畜牧业,迅速增加,但是由于良好的水土保持努力,土壤侵蚀在最近20年有所下降。这项研究揭示了人类活动与环境变化之间的关系,并为未来的气候变化响应提供了见解。
    The Tibetan Plateau (TP) is one of the most challenging areas for human long-term settlement due to its extreme living environment. Understanding the relationship between human activities and environmental changes in this extreme environment is important and can provide a historical reference for adapting to future climate change. In this study, we took the Angren Basin in the southern TP as a case study to elucidate the relationship since Little Ice Age (LIA). Using fecal stanol in feces, lake and river surface sediments, surface soils, and sediment core, we found that specific indices S1 and S2 from the composition of coprostanol, epicoprostanol, 5β-ethylcoprostanol and 5β-ethylepicoprostanol can reflect changes in human population and herbivores, respectively. Through the comparison between environmental changes determined by grain size, elements, sedimentation rate, and other climate records, the relationship between human activities and environmental changes was interpreted. Our results indicate that: (i) during 1480-1820 CE, the fecal stanols in lake sediments mainly originated from livestock, and the human population was low. In contrast, during 1820-2021 CE, the proportion and flux of S1 have been continuously increasing, indicating significant population growth. (ii) During the middle LIA, the cold-dry climate inhibited the development of agriculture and farming. However, the increased precipitation during the late LIA promoted that development, resulting in an increase in human population and livestock in a short term. (iii) Since 1951, people have reclaimed wasteland and developed husbandry, leading to increased soil erosion. (iv) Over the past 40 years, with a warm-humid climate and good policy support, human activities, such as agriculture and husbandry, have rapidly increased, but soil erosion has declined in the recent 20 years due to good soil-water conservation efforts. This study sheds light on the relationship between human activities and environmental changes and provides insights into future climate change responses.
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  • 文章类型: Journal Article
    Lakes,作为完整的社会生态系统,是探索气候和人为影响的热点,连续的沉积物记录揭示了关键的途径。然而,自人类世以来,大型浅水湖泊中的多代理对典型的突发性事件和持续驱动因素的反应尚不清楚。这里,我们探索了多代理峰与自然和人为事件之间的驱动-识别关系,以及短期扰动和长期压力的归因。为此,沉积物岩心记录,社会生态数据,并将官方记录中的记录事件整合到一个大型浅湖(洞庭湖,中国)。在集水区环境代理中观察到显著的因果级联和路径效应(拟合优度:0.488;总效应:-1.10;p<.001),湖泊生物代理,和混合源代理。提出了峰值事件识别率(PEIR)和事件峰值驱动率,分别为28.57%-46.43%和50%-81.25%,分别。使用沉积物代理描绘事件扰动的不完全准确性是由湖内和湖外的各种信息过滤器引起的。复合事件的PEIR比人为主导和自然主导事件的PEIR高1.41(±0.72)和1.09(±0.46)倍,分别。此外,社会经济活动,水文动力学,土地利用变化,农业施加了巨大而持久的压力,累积贡献55.3%-80.9%的沉积物代理变化。在2000年之后,观察到这些力量的时间贡献相对协同或拮抗趋势,这主要归因于“绿色谷物”项目和三峡大坝。这项研究是为数不多的区分人类世以来典型事件扰动和长期持续压力下大型浅水湖泊中多个代理的驱动-响应关系的研究之一。这些发现将帮助决策者和管理者解决长期由气候变化和人类活动引发的生态扰动。
    Lakes, as integral social-ecological systems, are hotspots for exploring climatic and anthropogenic impacts, with crucial pathways revealed by continuous sediment records. However, the response of multi-proxies in large shallow lakes to typical abrupt events and sustained drivers since the Anthropocene remains unclear. Here, we explored the driver-identification relationships between multi-proxy peaks and natural and anthropogenic events as well as the attribution of short-term perturbations and long-term pressures. To this end, sediment core records, socio-ecological data, and documented events from official records were integrated into a large shallow lake (Dongting Lake, China). Significant causal cascades and path effects (goodness-of-fit: 0.488; total effect: -1.10; p < .001) were observed among catchment environmental proxies, lake biogenic proxies, and mixed-source proxies. The peak-event identification rate (PEIR) and event-peak driving rate were proposed, and values of 28.57%-46.43% and 50%-81.25% were obtained, respectively. The incomplete accuracy of depicting event perturbations using sediment proxies was caused by various information filters both inside and outside the lake. PEIRs for compound events were 1.41 (±0.72) and 1.09 (±0.46) times greater than those for anthropogenic-dominated and natural-dominated events, respectively. Furthermore, socio-economic activity, hydrologic dynamics, land-use changes, and agriculture exerted significant and persistent pressures, cumulatively contributing 55.3%-80.9% to alterations in sediment proxies. Relatively synergistic or antagonistic trends in temporal contributions of these forces were observed after 2000, which were primarily attributed to the \"Grain for Green\" project and the Three Gorges Dam. This study represents one of the few investigations to distinguish the driver-response relationship of multiple proxies in large shallow lakes under typical event perturbations and long-term sustained pressures since the Anthropocene. The findings will help policymakers and managers address ecological perturbations triggered by climate change and human activities over long-term periods.
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  • 文章类型: English Abstract
    在这项研究中,从洞庭湖收集地表沉积物样品,洪湖,和赤湖,并测定了10种重金属的浓度。然后,使用累积污染指数(Igeo)评估了重金属积累的潜在风险,富集因子(EF),和潜在生态风险指数(RI),并使用相关分析(Pearson)和主成分分析(PCA)进行来源追踪。结果表明,Cd的污染和潜在生态风险最为严重。东洞庭湖Cd的平均值,洪湖,赤湖和赤湖分别为2.85、1.59和3.57mg·kg-1。Cd的浓度分别比相应省份的土壤背景值高25.87、11.36和37.58倍,超过风险筛查值(0.6mg·kg-1)。特别是,赤湖Cd浓度超过风险控制值(3.0mg·kg-1)。除了Cd,洪湖的As浓度也令人担忧。同时,铜,As,Zn,赤湖中的铅也不容忽视。三个湖泊的潜在生态风险排序为:赤湖(RI=1127)>东洞庭湖(RI=831)>洪湖(RI=421)。重金属的主要来源是工业采矿,农业生产,水产养殖,一些重金属(锰和铜)来自天然来源。该研究对长江中游典型湖泊沉积物中重金属的防治具有重要意义。
    In this study, surface sediment samples were collected from Dongting Lake, Honghu Lake, and Chihu Lake, and the concentrations of 10 heavy metals were measured. Then, the potential risk of heavy metal accumulation was evaluated using the cumulative pollution index (Igeo), the enrichment factor (EF), and the potential ecological risk index (RI), and the sources were traced using correlation analysis (Pearson) and principal component analysis (PCA). The results showed that the pollution and potential ecological risk of Cd were the most serious. The mean values of Cd in East Dongting Lake, Honghu Lake, and Chihu Lake were 2.85, 1.59, and 3.57 mg·kg-1, respectively. The concentrations of Cd were 25.87, 11.36, and 37.58 times higher than the soil background values of the corresponding provinces, which exceeded the risk screening value (0.6 mg·kg-1). Particularly, the Cd concentration of Chihu Lake exceeded the risk control value (3.0 mg·kg-1). Besides Cd, the concentration of As in Honghu Lake was also of concern. At the same time, the Cu, As, Zn, and Pb in Chihu Lake should not be neglected. The potential ecological risks of the three lakes were ranked as follows:Chihu Lake (RI=1 127)>East Dongting Lake (RI=831)>Honghu Lake (RI=421). The primary sources of heavy metals were industrial mining, agricultural production, and aquaculture, and some heavy metals (Mn and Cu) were from natural sources. This study was of great significance for the prevention and control of heavy metals in the sediments of typical lakes in the middle reaches of the Yangtze River.
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  • 文章类型: Journal Article
    微塑料混合物普遍分布在全球生态系统中,包括不同的类型。然而,目前尚不清楚微塑料多样性如何影响微生物的生物相互作用。这里,我们开发了600个微观世界的新实验,这些微观世界具有1至6种类型的微塑料多样性,并在15和20°C下孵育2个月后研究了湖泊沉积物中微生物群落的生态网络。我们发现,微塑料多样性通常会在两个温度下增强微生物网络的复杂性,例如增加网络连接和减少平均路径长度。除了15°C下的负相互作用外,这种现象还通过增强物种对高微塑料多样性的相互作用得到了进一步证实。有趣的是,温度升高进一步夸大了微塑料多样性对网络结构的影响,导致更高的网络连接性和物种相互作用。始终如一,使用物种灭绝模拟,我们发现,更高的微塑料多样性和温度导致更强大的网络,它们的作用是由可生物降解的微塑料的存在所介导的。我们的发现提供了第一个证据,即增加微塑料多样性可以意外地促进微生物网络的复杂性和稳定性,并且未来的变暖可能会放大这种影响。
    Microplastic mixtures are ubiquitously distributed in global ecosystems and include varying types. However, it remains unknown how microplastic diversity affects the biotic interactions of microbes. Here, we developed novel experiments of 600 microcosms with microplastic diversity ranging from 1 to 6 types and examined ecological networks for microbial communities in lake sediments after 2 months of incubation at 15 and 20 °C. We found that microplastic diversity generally enhanced the complexity of microbial networks at both temperatures, such as increasing network connectance and reducing average path length. This phenomenon was further confirmed by strengthened species interactions toward high microplastic diversity except for the negative interactions at 15 °C. Interestingly, increasing temperatures further exaggerated the effects of microplastic diversity on network structures, resulting in higher network connectivity and species interactions. Consistently, using species extinction simulations, we found that higher microplastic diversity and temperature led to more robust networks, and their effects were additionally and positively mediated by the presence of biodegradable microplastics. Our findings provide the first evidence that increasing microplastic diversity could unexpectedly promote the complexity and stability of microbial networks and that future warming could amplify this effect.
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  • 文章类型: Journal Article
    抗菌素耐药性(AMR)是对传染病治疗的持续威胁。然而,这种现象在环境水库中的潜在相关性仍然提出了许多问题。检测环境中的抗微生物细菌是了解临床环境之外的耐药性流行的关键方面。因为在环境中的检测表明耐药性可能已经普遍存在。我们在15个月的时间序列中从三个城市水体中分离出了耐药性大肠杆菌,确定了它们的抗菌敏感性,调查了他们的人口结构,并确定了抗性的遗传决定因素。我们发现,每个地点的大肠杆菌种群由不同的显性基因型组成,并显示出不同的抗菌和多药耐药性模式。尽管地理上很接近。许多基因组测序的菌株属于国际关注的序列类型,特别是ST131克隆复合物。我们发现对临床上重要的抗菌药物如阿莫西林有广泛的耐药性,头孢噻肟,还有环丙沙星,但发现所有菌株都对阿米卡星和最后一线抗生素美罗培南和磷霉素敏感。耐药性通常是由于可获得的抗菌素耐药性基因,而gyrA的染色体突变,ParC,并赋予了对喹诺酮类药物的耐药性。对菌株子集的全基因组分析进一步揭示了存在的大肠杆菌种群的多样性,鉴定了一系列AMR和毒力基因,其中许多存在于染色体上,包括blaCTX-M.最后,我们确定环境的持久性,站点之间的传输,很可能是由野生鸟类介导的,移动遗传元件的转移可能对观察到的模式有重要贡献。IMPORTANCEA一种健康观点对于了解全球抗菌素耐药性(AMR)的程度至关重要,近年来,对环境中AMR的调查越来越多。然而,大多数研究都集中在被污水直接污染的水道上,工业制造,或农业活动。因此,仍然缺乏关于更自然的知识,对环境的影响较小。通过对大肠杆菌AMR的表型和基因型调查,这项研究增加了我们对这些类型环境中抵抗的程度和模式的理解,包括时间序列,并表明复杂的生物和非生物因素有助于观察到的模式。我们的研究进一步强调了在淡水环境中纳入微生物监测的重要性,以便更好地理解人类和动物健康的潜在风险,以及环境如何作为未来潜在临床感染的前哨。
    Antimicrobial resistance (AMR) is an ever-present threat to the treatment of infectious diseases. However, the potential relevance of this phenomenon in environmental reservoirs still raises many questions. Detection of antimicrobial-resistant bacteria in the environment is a critical aspect for understanding the prevalence of resistance outside of clinical settings, as detection in the environment indicates that resistance is likely already widespread. We isolated antimicrobial-resistant Escherichia coli from three urban waterbodies over a 15-month time series, determined their antimicrobial susceptibilities, investigated their population structure, and identified genetic determinants of resistance. We found that E. coli populations at each site were composed of different dominant phylotypes and showed distinct patterns of antimicrobial and multidrug resistance, despite close geographic proximity. Many strains that were genome-sequenced belonged to sequence types of international concern, particularly the ST131 clonal complex. We found widespread resistance to clinically important antimicrobials such as amoxicillin, cefotaxime, and ciprofloxacin, but found that all strains were susceptible to amikacin and the last-line antimicrobials meropenem and fosfomycin. Resistance was most often due to acquirable antimicrobial resistance genes, while chromosomal mutations in gyrA, parC, and parE conferred resistance to quinolones. Whole-genome analysis of a subset of strains further revealed the diversity of the population of E. coli present, with a wide array of AMR and virulence genes identified, many of which were present on the chromosome, including blaCTX-M. Finally, we determined that environmental persistence, transmission between sites, most likely mediated by wild birds, and transfer of mobile genetic elements likely contributed significantly to the patterns observed.IMPORTANCEA One Health perspective is crucial to understand the extent of antimicrobial resistance (AMR) globally, and investigation of AMR in the environment has been increasing in recent years. However, most studies have focused on waterways that are directly polluted by sewage, industrial manufacturing, or agricultural activities. Therefore, there remains a lack of knowledge about more natural, less overtly impacted environments. Through phenotypic and genotypic investigation of AMR in Escherichia coli, this study adds to our understanding of the extent and patterns of resistance in these types of environments, including over a time series, and showed that complex biotic and abiotic factors contribute to the patterns observed. Our study further emphasizes the importance of incorporating the surveillance of microbes in freshwater environments in order to better comprehend potential risks for both human and animal health and how the environment may serve as a sentinel for potential future clinical infections.
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