Fish diversity

鱼类多样性
  • 文章类型: Journal Article
    本文的目的是全面调查和分析Al-Chibayish沼泽的生态动态。这项研究的重点是关键的环境因素,旨在深入了解沼泽中鱼类种群的多样性和丰度,确定优势鱼类家族,并评估物种组成的每月变化。从Al-Chibayish沼泽中选择了两个地点进行这项研究,每月在每个地点收集三个水样,从2020年3月到2021年2月。记录的平均水温为23.66°C,而盐度含量在研究期间表现出变化。七月,盐度含量为4.34g/l。此外,pH范围为7.4至8.5。溶解氧水平呈季节性变化,平均值为7.65mg/l。平均碱度值为155.25mg/l。就相对丰度而言,Planilizaabu是主要物种,占总渔获量的25.99%。其百分比从5月的12.13%到12月的46.74%不等,Alburnussellal占渔获量的19.07%,变化在5月份的5.10%和6月份的30.99%之间。金黄色葡萄球菌占总数的15.98%,从3月份的11.17%波动到1月份的20.27%。其他值得注意的物种包括Carassiusauratus(13.10%),Coptodonzillii(10.49%),和黄体Carasobarbus(3.80%)。H指数随时间变化,数值范围从3月份的1.25到10月份的2.99的峰值。另一方面,J指数也显示出时间变异性,数值范围从4月的0.65到8月的0.86,虽然D指数也显示出变化,值从3月份的1.66到1月份的3.79。最后,基于这些数据,研究区域的生态系统可以被认为是一个脆弱的系统。
    The aim of this paper is to comprehensively investigate and analyze the ecological dynamics of the Al-Chibayish Marsh. The study focuses on key environmental factors, aims to gain insight into the diversity and abundance of fish populations within the marsh, identifies dominant fish families, and assesses monthly changes in species composition. Two locations were chosen from among the Al-Chibayish marshes for this study, and three water samples were collected every month at every site, starting from March 2020 to February 2021. The mean water temperature recorded was 23.66 °C, while the salinity content exhibited variation over the study period. In July, the salinity content measured 4.34 g/l. Moreover, the pH ranged from 7.4 to 8.5. Dissolved oxygen levels exhibited seasonal variation, with an average value of 7.65 mg/l. The mean alkalinity value was 155.25 mg/l. Planiliza abu is the predominant species in terms of relative abundance, constituting 25.99 % of the total catch. Its percentages varied from 12.13 % in May to 46.74 % in December, with Alburnus sellal accounting for 19.07 % of the catch, with variations between 5.10 % in May and 30.99 % in June. Oreochromis aureus comprised 15.98 % of the total and fluctuated from 11.17 % in March to 20.27 % in January. Other notable species include Carassius auratus (13.10 %), Coptodon zillii (10.49 %), and Carasobarbus luteus (3.80 %). The H index exhibited variation over time, with values ranging from 1.25 in March to a peak of 2.99 in October. On the other hand, the J index also displayed temporal variability, with values ranging from 0.65 in April to 0.86 in August, while the D index showed changes as well, with values differing from 1.66 in March to 3.79 in January. Finally, based on these data, the ecosystem in the study area can be considered a fragile system.
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  • 文章类型: Journal Article
    海洋海绵最近已成为有效的自然环境DNA(eDNA)采样器。海绵积累eDNA的能力提供了一个令人兴奋的机会,可以以高时间和空间精度重建当代社区和生态系统。然而,使用历史的eDNA,被困在科学收藏品中的大量标本中,开辟了开始重建过去的社区和生态系统的机会。这里,我们将术语“heDNA”定义为表示可以从最近的过去获得的具有高空间和时间准确性的历史环境DNA。使用储存在广泛的海洋无脊椎动物集合中的各种南极海绵标本,我们能够从20岁以下的标本中恢复有关南极鱼类生物多样性的信息。我们成功地从27个海绵样本中恢复了64个鱼类的heDNA信号。Alpha多样性度量在保存方法之间没有差异,但是与干燥或乙醇中储存的海绵相比,冷冻储存的海绵具有明显不同的鱼类群落组成。我们的结果表明,我们始终能够可靠地提取被困在海洋海绵标本中的heDNA,从而能够以以前无法实现的空间和时间分辨率重建和调查最近的社区和生态系统。从其他保存方法中提取heDNA的未来研究,以及标本年龄和采集方法的影响,将加强和扩大这种新资源在上个世纪获得有关生态变化的新知识的机会。
    Marine sponges have recently emerged as efficient natural environmental DNA (eDNA) samplers. The ability of sponges to accumulate eDNA provides an exciting opportunity to reconstruct contemporary communities and ecosystems with high temporal and spatial precision. However, the use of historical eDNA, trapped within the vast number of specimens stored in scientific collections, opens up the opportunity to begin to reconstruct the communities and ecosystems of the past. Here, we define the term \'heDNA\' to denote the historical environmental DNA that can be obtained from the recent past with high spatial and temporal accuracy. Using a variety of Antarctic sponge specimens stored in an extensive marine invertebrate collection, we were able to recover information on Antarctic fish biodiversity from specimens up to 20 years old. We successfully recovered 64 fish heDNA signals from 27 sponge specimens. Alpha diversity measures did not differ among preservation methods, but sponges stored frozen had a significantly different fish community composition compared to those stored dry or in ethanol. Our results show that we were consistently and reliably able to extract the heDNA trapped within marine sponge specimens, thereby enabling the reconstruction and investigation of communities and ecosystems of the recent past with a spatial and temporal resolution previously unattainable. Future research into heDNA extraction from other preservation methods, as well as the impact of specimen age and collection method, will strengthen and expand the opportunities for this novel resource to access new knowledge on ecological change during the last century.
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  • 文章类型: Journal Article
    全球淡水生物多样性下降的主要原因之一可以归因于大坝建设导致的水文条件变化。然而,当前的大多数研究都集中在单个或有限数量的水坝上。这里,我们进行了季节性鱼类调查,使用环境DNA(eDNA)方法,在吴江干流(长江支流,中国)以研究大规模梯级水电开发对鱼类多样性格局变化的影响。eDNA调查显示,与外来鱼类相比,本地鱼类物种有所减少。鱼类群落结构也发生了变化,随着优势嗜变鱼类的减少,小型鱼类的增加,以及储层物种组成的均质化。此外,环境因素,如温度,溶解氧和储层年龄,对鱼类群落多样性有显著影响。这项研究为评估级联发展对鱼类多样性模式的影响提供了基础信息。
    One of the main reasons for the decline in global freshwater biodiversity can be attributed to alterations in hydrological conditions resulting from dam construction. However, the majority of current research has focused on single or limited numbers of dams. Here, we carried out a seasonal fish survey, using environmental DNA (eDNA) method, on the Wujiang River mainstream (Tributaries of the Yangtze River, China) to investigate the impact of large-scale cascade hydropower development on changes in fish diversity patterns. eDNA survey revealed that native fish species have decreased in contrast to alien fish. There was also a shift in fish community structure, with declines of the dominant rheophilic fish species, an increase of the small-size fish species, and homogenization of species composition across reservoirs. Additionally, environmental factors, such as temperature, dissolved oxygen and reservoir age, had a significant effect on fish community diversity. This study provides basic information for the evaluation of the impact of cascade developments on fish diversity patterns.
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  • 文章类型: Journal Article
    in鱼属Rineloricaria的物种在Sul河流域很常见,在巴西东南部;在这里,我们对居住在盆地的属物种的分类学多样性和地理分布进行了修订,基于新的形态学和分子数据。基于细胞色素C氧化酶亚基1核苷酸序列的五种物种定界方法产生了可比的分子操作分类单位。自动发现条形码间隙,通过自动分区组装物种,条形码索引号,泊松树过程方法的贝叶斯实现支持五个进化谱系的识别。这些分类单位被分配给先前描述的黑龙,Rineloricariasteindachneri,Rineloricariazawadzkii,和裸眼Rineloricaria,还有一个没有描述的物种。使用广义的混合Yule合并定界方法将R.zawadzkii进一步分为两个种内地理结构的谱系。最大可能性系统发育分析显示,南Paraíba的五个谱系与巴西南部和东南部的不同物种有更紧密的关系(RibeiradeIguape,LagoadosPatos,乌拉圭,巴拉圭,和巴拉那河流域)比彼此。根据对样品的分析,最近收集的材料,和鱼类学收藏的标本,根据当前的描述性标准重新描述了描述不佳的R.nigricauda和R.steindachneri。正式描述了来自Sul河中上游Paraíbado流域的未描述物种。一个新物种的描述,以及对黑龙和R.Steindachneri物种边界的描述,有助于了解SulParaíbadoRiver流域和巴西东南部邻近的沿海排水沟。提供了在Sul河流域发生的Rineloricaria物种的识别密钥。
    Species of the catfish genus Rineloricaria are common in the Paraíba do Sul River basin, in southeastern Brazil; here we present a revision of the taxonomic diversity and geographic distribution of the species of the genus inhabiting the basin, based on novel morphologic and molecular data. Five species delimitation methods based on cytochrome C oxidase subunit 1 nucleotide sequences yielded comparable molecular operational taxonomic units. The automatic barcode gap discovery, assemble species by automatic partitioning, barcode index number, and Bayesian implementation of the Poisson tree process methods supported the recognition of five evolutionary lineages. These taxonomic units were assigned to the previously described Rineloricaria nigricauda, Rineloricaria steindachneri, Rineloricaria zawadzkii, and Rineloricaria nudipectoris, and an additional undescribed species. R. zawadzkii was further divided into two intraspecific geographically structured lineages using the generalized mixed Yule coalescent delimitation method. A maximum likelihood phylogenetic analysis revealed that the five lineages from the Paraíba do Sul have closer relationships to different species from southern and southeastern Brazil (Ribeira de Iguape, Lagoa dos Patos, Uruguay, Paraguay, and Parana river basins) than to each other. Based on the analysis of lectotypes, recently collected material, and specimens from ichthyological collections, the poorly described R. nigricauda and R. steindachneri are redescribed following current descriptive standards. The undescribed species from the middle and upper Paraíba do Sul River basin is formally described. The description of a new species, along with the description of species boundaries in R. nigricauda and R. steindachneri, contributes to the knowledge of the ichthyofauna of the Paraíba do Sul River basin and adjacent coastal drainages of southeastern Brazil. An identification key for the species of Rineloricaria occurring in the Paraíba do Sul River basin is provided.
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  • 文章类型: Journal Article
    高原河流生态系统通常非常脆弱,并且对环境变化具有响应性。环境变化下高原河流鱼类多样性和群落聚集的驱动机制对生态与环境的跨学科研究提出了显著的复杂性。本研究结合分子生物学技术和数学模型,以确定影响高原河流淡水鱼多样性空间异质性和驱动鱼类群落组装的机制。通过利用环境-DNA元编码和零模型,这项研究揭示了随机过程对中国黄河流域of水高原河(YRB)鱼类多样性变化和群落组装的影响。这项研究确定了30个操作分类单位(OTU),对应于20种不同的鱼类。这项研究的结果表明,西宁上游地区的鱼类α多样性显着高于中下游地区(Shannon指数:P=0.017和Simpson:P=0.035)。除了我们测量的海拔高度(P=0.023)外,没有发现这种模式与任何其他环境因素有关。Further,研究表明,of水河中鱼类群落的聚集主要取决于随机生态过程。这些发现表明,海拔不是影响高原河流鱼类生物多样性模式的主要因素。在高原河流中,海拔高度鱼类群落的空间异质性主要由生境破碎化条件下的随机过程决定,而不是任何其他物理化学环境因素。河流下游河道连通性的局限性可能是of水河鱼类群落随机过程的主要原因。将生态过程纳入eDNA方法对于未来监测和评估高原河流中的鱼类生物多样性和群落聚集具有巨大潜力。
    Plateau river ecosystems are often highly vulnerable and responsive to environmental change. The driving mechanism of fish diversity and community assembly in plateau rivers under changing environments presents a significant complexity to the interdisciplinary study of ecology and environment. This study integrated molecular biological techniques and mathematical models to identify the mechanisms influencing spatial heterogeneity of freshwater fish diversity and driving fish community assembly in plateau rivers. By utilizing environmental-DNA metabarcoding and the null model, this study revealed the impact of the stochastic process on fish diversity variations and community assembly in the Huangshui Plateau River of the Yellow River Basin (YRB) in China. This research identified 30 operational taxonomic units (OTUs), which correspond to 20 different fish species. The findings of this study revealed that the fish α-diversity in the upstream region of Xining is significantly higher than in the middle-lower reach (Shannon index: P = 0.017 and Simpson: P = 0.035). This pattern was not found to be related to any other environmental factors besides altitude (P = 0.023) that we measured. Further, the study indicated that the assembly of fish communities in the Huangshui River primarily depends on stochastic ecological processes. These findings suggested that elevation was not the primary factor impacting the biodiversity patterns of fish in plateau rivers. In plateau rivers, spatial heterogeneity of fish community on elevation is mainly determined by stochastic processes under habitat fragmentation, rather than any other physicochemical environmental factors. The limitations of connectivity in the downstream channel of the river could be taken the mainly responsibility for stochastic processes of fish community in Huangshui River. Incorporating ecological processes in the eDNA approach holds great potential for future monitoring and evaluation of fish biodiversity and community assembly in plateau rivers.
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  • 文章类型: Journal Article
    “印度国家鱼类”的概念强调了分布在该国各个州的优先鱼类的重要性和意义。这篇综述文章从各个角度系统地记录了国家鱼类的现状,确定普遍存在的知识差距,并强调了对保护和可持续利用这些宝贵遗传资源至关重要的问题和战略计划。总共检查了8357份出版物,以获取有关国家鱼类物种的综合信息,在八类中选择了适当的项目:生物学,生理和营养,水产养殖,栖息地和环境参数,遗传学和生物技术,收获和采后,鱼类健康管理,和其他人。综合信息用于介绍国家鱼类物种的研究和开发现状。在渔业管理和养护水产养殖的角度下,还描述了要解决的知识差距。根据调查结果,在各种原位和异地保护措施下,提出并讨论了有针对性的保护计划的战略计划。Further,申报中涉及的部门流程,利益相关者参与的重要性,即,当地社区和决策者,在促进有效的保护措施方面,并指出了利用这些宝贵鱼类遗传资源的规划。
    The concept of \"state fishes of India\" highlights the importance and significance of the prioritized fish species distributed across various states within the country. This review article systematically documents the current status of state fishes from various perspectives, identifies the prevailing knowledge gaps, and also highlights the issues and strategic plans essential for the conservation and sustainable utilization of these valuable genetic resources. A total of 8357 publications were checked for the consolidated information on state fish species, and the appropriate items were selected under eight categories: biology, physiology and nutrition, aquaculture, habitat and environmental parameters, genetics and biotechnology, harvest and postharvest, fish health management, and others. The synthesized information was used to present the current status of research and development on state fish species. The knowledge gaps that are to be addressed are also depicted under the perspectives of fisheries management and conservation aquaculture. Based on the findings, strategic plans for the targeted conservation programmes are proposed and discussed under various in situ and ex situ conservation measures. Further, the departmental processes involved in the declaration, the importance of stakeholder involvement, namely, local communities and policymakers, in fostering effective conservation measures, and planning for utilization of these valuable fish genetic resources are also indicated.
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  • 文章类型: Journal Article
    这项研究调查了印度西海岸暂时封闭的沙洲河口的鱼类聚集,跨越不同的区域和季节。中等物种多样性(54种),低物种丰度,从较低到较高河口梯度的鱼类多样性变化(较低区域的计数较高,并从中部到上部区域减少),河口的显着特征是海洋移民(河口使用)和食肉物种(摄食方式)的患病率较高。独特的空间,季节性,在河口记录了基于河口状态的变化,基于多样性指数和分类单元的数量。在季风前发现了峰值多样性和丰度,在河口张开的状态下。整个河口梯度受到多种压力源的人为影响,除了河口地区,这受到海洋连通性的青睐。迄今为止,Poonthura河口(PE)的鱼类组合结构尚未受到人为干扰的影响。然而,河口的生长和苗圃功能受到了严重损害。幼鱼在生态系统中占主导地位,以及来自点源和非点源的普遍人为压力强调了长期维持沿海物种种群的必要性,以及需要为这个脆弱的生态系统制定和实施紧急管理战略。
    This study investigates the fish assemblage in a temporarily-closed sandbar estuary along India\'s west coast, across different zones and seasons. Moderate species diversity (54 species), low species abundance, varying fish diversity from lower to upper estuarine gradient (higher counts in lower zones, and decreasing from middle to upper zones), and higher prevalence of marine migrants (estuarine use) and piscivorous species (feeding mode) were the significant characteristics of the estuary. Distinct spatial, seasonal, and estuarine mouth state-based variations were recorded in the estuary, based on diversity indices and count of taxa. Peak diversity and abundance were noted during the pre-monsoon, and during the open mouth state of the estuary. The entire estuarine gradient is anthropogenically impacted by a multitude of stressors, except at the estuarine mouth region, which is favored by marine connectivity. The fish assemblage structure in Poonthura estuary (PE) has thus far remained unaffected by anthropogenic disturbances. Nevertheless, growth and nursery function of the estuary have been significantly compromised. The predominance of juvenile fish in the ecosystem, and prevailing anthropogenic stressors from point and non-point sources underscore the necessity for long-term maintenance of the population of coastal species, as well as a need for developing and implementing urgent management strategies for this fragile ecosystem.
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  • 文章类型: Journal Article
    目前有76个有效物种,马尾鼻cat鱼属Ancistrus是第四大种类丰富的cat鱼属,然而Ancistrus的多样性仍然被低估,许多物种仍未被描述。对于亚马逊的秘鲁安第斯源头尤其如此,它们富含未命名的Ancistrus物种,但最近很少受到分类学的关注。我们描述了来自帕尔卡祖河支流的一种独特条纹的新Ancistrus物种,在Pachitea-Ucayali-Amazonas流域。新物种与所有同类物种的不同之处在于具有黑色,覆盖头部的蛭状线条和两到四个明显的黑色,平行,从头部到尾鳍的外侧身体条纹(vs.身体均匀着色或头部和身体上有深色或浅色斑点或斑点,或侧面的黑色蛭状线条)。新物种是从丰富的Ucayali河鱼鱼中描述的Ancistrus的第五个有效物种。以前在水族馆鱼类贸易中被认为是L267。
    With 76 currently valid species, the bushynose catfish genus Ancistrus is the fourth most species-rich catfish genus, yet Ancistrus diversity remains underestimated, with many species still undescribed. This is especially true of the Peruvian Andean headwaters of the Amazon, which are rich in unnamed Ancistrus species but have received little recent taxonomic attention. We describe a distinctively striped new Ancistrus species from tributaries of the Palcazú River, in the Pachitea-Ucayali-Amazonas drainage basin. The new species differs from all congeners by having black, vermiculated lines covering the head and two to four distinct black, parallel, lateral body stripes from head to caudal fin (vs. body uniformly colored or with dark or light spots or blotches over head and body, or black vermiculate lines on flanks). The new species is the fifth valid species of Ancistrus described from the rich Ucayali River ichthyofauna. It has previously been recognized in the aquarium fish trade as L267.
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  • 文章类型: Journal Article
    为了监测鱼类生物多样性的变化,并阐明造成这些变化的因素,定量分析了尼罗河三角洲湖泊过去30年的登陆成分(LC)。LC数据表明目标物种向海底机会物种转移。在PERMANOVA和PCA图中突出显示的两个主要间隔之间存在显着差异(P<0.001);第一个间隔(1991-2002)以罗非鱼和稀有物种为主,而第二个间隔(2003-2020年)主要是机会鲶鱼和鱼。观察到物种丰富度和稀有物种登陆的显着下降,与罗非鱼等其他主要物种相比,稀有类群要么被过度开发,要么可能受到污染水平增加的积极影响。相比之下,机会鱼种,如鲶鱼和鱼,由于它们能够耐受季节性污染相关的缺氧,因此在这种污染的水中蓬勃发展。
    To monitor the changes in fish biodiversity and to elucidate the factors responsible for these changes, the landings composition (LC) over the past 30 years in the Nile-Delta lakes was quantitatively analyzed. The LC data indicates a shift in target species towards demersal opportunistic species. A significant difference (P < 0.001) between two main intervals highlighted in both PERMANOVA and PCA plot; the first interval (1991-2002) is dominated by Tilapia and rare species, while the second interval (2003-2020) is dominated by the opportunistic catfish and mullet species. Noticeable declines in species richness and landings of rare species were observed, where rare taxa either have been overexploited or they may be positively affected by increasing pollution levels than do other dominated species such as Tilapia. In contrast, opportunistic fish species such as catfish and mullet, have flourished in such polluted water due to their ability to tolerate seasonal pollution-related hypoxia.
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  • 文章类型: Journal Article
    淡水生态系统受到人类的巨大威胁,其中生境异质性最为明显,是鱼类多样性下降的重要原因之一。这种现象在乌江特别突出,其中,干流的连续急流被11个梯级水电水库划分为12个相互隔离的部分。基于常规调查方法对生态环境的危害更大的事实,本研究采用高效、无创的环境DNA元编码(eDNA)方法对乌江干流12个河段进行了水生态调查。共获得2299个操作分类单位(OTU),对应97种,包括4种国家保护鱼类和12种外来物种。结果表明,乌江干流鱼类群落结构,最初是由嗜流变鱼物种主导的,已经改变了。乌江干流库区之间的鱼类物种多样性和物种组成存在差异。在梯田水电和过度捕捞等人为因素的影响下,该地区的鱼类种类逐渐减少。因此,鱼类种群表现出物种小型化的趋势,土著鱼类受到严重威胁。此外,通过eDNA方法监测的鱼类组成被发现接近乌江历史信息的鱼类组成,这表明eDNA方法可以作为该盆地常规方法的补充工具。
    Freshwater ecosystems are under great threat from humans, among which habitat heterogeneity is the most obvious, being one of the important reasons for the decline of fish diversity. This phenomenon is particularly prominent in the Wujiang River, where the continuous rapids of the mainstream have been divided into 12 mutually isolated sections by 11 cascade hydropower reservoirs. Based on the fact that conventional survey methods are more harmful to the ecological environment, the efficient and noninvasive environmental DNA metabarcoding (eDNA) approach was used in this study to conduct an aquatic ecological survey of the 12 river sections of the mainstream of the Wujiang River. A total of 2299 operational taxonomic units (OTUs) were obtained, corresponding to 97 species, including four nationally protected fish species and 12 alien species. The results indicate that the fish community structure of the Wujiang River mainstream, which was originally dominated by rheophilic fish species, has been changed. And there are differences in fish species diversity and species composition among the reservoir areas of the mainstream of the Wujiang River. The fish species in the area have gradually declined under the influence of anthropogenic factors such as terraced hydropower and overfishing. The fish populations consequently have demonstrated a tendency to be species miniaturized, and the indigenous fish are severely threatened. In addition, the fish composition monitored by the eDNA approach was found to be close to the fish composition of historical information on the Wujiang River, indicating that eDNA approach may be used as a complementary tool to conventional methods in this basin.
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