DNA Mismatch Repair

DNA 错配修复
  • 文章类型: Journal Article
    In recent years, immune checkpoint inhibitors (ICIs) have been widely used in malignant solid tumors with remarkable efficacy. However, in colorectal cancer (CRC), ICIs have shown significant therapeutic effects only in patients with highly microsatellite unstable/mismatch repair-deficient metastatic CRC and these patients are only a minority of all CRC patients. In contrast, the majority of patients, those with microsatellite stable (MSS)/mismatch repair-complete (pMMR)-type metastatic CRC, could hardly benefit from ICI monotherapies, and immune combination therapies have become the key to solveing this clinical challenge. This article introduces the common patterns and possible mechanisms of immune-combination therapies for MSS/pMMR-type CRC, the exploration and progress made in the application of immune-combination therapies, as well as the possible predictive markers of efficacy of immune therapies. The prospects and directions of ICIs in the treatment of MSS/pMMR-type CRC are also discussed.
    近年来,免疫检查点抑制剂(ICIs)在恶性实体肿瘤中应用广泛且疗效显著。然而,在结直肠癌(CRC)中,ICIs仅对占少数的微卫星高度不稳定/错配修复缺失型转移性CRC表现出显著的治疗效果,而占大多数的微卫星稳定(MSS)/错配修复完整(pMMR)型转移性CRC几乎不能从ICIs单药治疗中获益,免疫联合治疗成为破解这一临床难题的关键。文章介绍了MSS/pMMR型CRC免疫联合治疗的常见模式和可能机制,总结归纳了MSS/pMMR型CRC免疫联合治疗方面所做的探索和取得的进展以及免疫治疗疗效的可能预测标志物,对ICIs在MSS/pMMR型CRC治疗中的应用前景进行了展望。.
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  • 文章类型: Journal Article
    缺陷(d)DNA错配修复(MMR)是预测实体瘤中对PD-1阻断免疫疗法的更好响应的生物标志物。dMMR可由MMR基因突变或蛋白质失活引起,可以通过测序和免疫组织化学检测,分别。探讨dMMR在弥漫大B细胞淋巴瘤(DLBCL)中的作用,MMR基因突变和MSH6,MSH2,MLH1和PMS2蛋白的表达通过靶向下一代测序和免疫组织化学在接受标准化学免疫疗法治疗的大量DLBCL患者中进行评估。并与通过荧光多重免疫组织化学和基因表达谱定量的肿瘤免疫微环境特征相关。结果表明,遗传dMMR在DLBCL中很少发生,并且与癌症基因突变增加和良好的免疫微环境显着相关,但不影响预后。表型dMMR也很少见,MMR蛋白在DLBCL中普遍表达。然而,瘤内异质性存在,并且具有表型dMMR的DLBCL细胞增加与T细胞和PD-1T细胞显着增加相关,T细胞和PAX5+细胞之间的平均最近邻距离更高,上调的免疫基因签名,LE4和LE7生态型及其潜在的Ecotyper定义的细胞状态,提示增加的T细胞仅靶向dMMR的肿瘤细胞亚群的可能性。仅在MYCDLBCL患者中,MSH6/PMS2高表达对预后有显著影响.这项研究显示了遗传/表型dMMR在DLBCL中的免疫学和预后作用,并提出了一个问题,即DLBCL浸润性PD-1+T细胞是否仅靶向肿瘤亚克隆,与PD-1阻断免疫疗法在DLBCL中的疗效相关。
    Deficient (d) DNA mismatch repair (MMR) is a biomarker predictive of better response to PD-1 blockade immunotherapy in solid tumors. dMMR can be caused by mutations in MMR genes or by protein inactivation, which can be detected by sequencing and immunohistochemistry, respectively. To investigate the role of dMMR in diffuse large B-cell lymphoma (DLBCL), MMR gene mutations and expression of MSH6, MSH2, MLH1, and PMS2 proteins were evaluated by targeted next-generation sequencing and immunohistochemistry in a large cohort of DLBCL patients treated with standard chemoimmunotherapy, and correlated with the tumor immune microenvironment characteristics quantified by fluorescent multiplex immunohistochemistry and gene-expression profiling. The results showed that genetic dMMR was infrequent in DLBCL and was significantly associated with increased cancer gene mutations and favorable immune microenvironment, but not prognostic impact. Phenotypic dMMR was also infrequent, and MMR proteins were commonly expressed in DLBCL. However, intratumor heterogeneity existed, and increased DLBCL cells with phenotypic dMMR correlated with significantly increased T cells and PD-1+ T cells, higher average nearest neighbor distance between T cells and PAX5+ cells, upregulated immune gene signatures, LE4 and LE7 ecotypes and their underlying Ecotyper-defined cell states, suggesting the possibility that increased T cells targeted only tumor cell subsets with dMMR. Only in patients with MYC¯ DLBCL, high MSH6/PMS2 expression showed significant adverse prognostic effects. This study shows the immunologic and prognostic effects of genetic/phenotypic dMMR in DLBCL, and raises a question on whether DLBCL-infiltrating PD-1+ T cells target only tumor subclones, relevant for the efficacy of PD-1 blockade immunotherapy in DLBCL.
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  • 文章类型: Journal Article
    Lynch综合征(LS)是一种与结直肠癌(CRC)相关的常见遗传病。准确识别LS患者具有挑战性,并建议采用通用的肿瘤筛查方法。我们介绍了在我院病理科进行普遍LS筛查的方法和结果。这项回顾性研究分析了5年(2017-2021年)的CRC肿瘤。免疫组织化学用于评估MMR蛋白表达,其次是BRAFV600E分析和MLH1启动子甲基化。统计分析检查了临床病理变量MMR状态和LS疑似肿瘤之间的关联。该研究分析了939例大肠癌,8.7%表现出错配修复(MMR)缺陷,明显低于以往的研究。应用算法后,确定了24例LS疑似病例,占测试患者的2.6%和MMR缺陷肿瘤的29.3%。我们的研究确立了对所有新的CRC病例进行普遍检测的可行性,以检测存在LS风险的个体。即使在缺乏临床信息的情况下。为了全面了解我们人口中的MMR状况,需要进一步调查。
    Lynch syndrome (LS) is a prevalent genetic condition associated with colorectal cancer (CRC). Accurate identification of LS patients is challenging, and a universal tumor screening approach has been recommended. We present the methodology and results of universal LS screening in our hospital\'s Pathology Department. This retrospective study analyzed CRC tumors from a 5-year period (2017-2021). Immunohistochemistry was used to assess MMR protein expression, followed by BRAF V600E analysis and MLH1 promoter methylation. Statistical analysis examined associations between clinicopathologic variables MMR status and LS-suspected tumors. The study analyzed 939 colorectal carcinomas, with 8.7% exhibiting mismatch repair (MMR) deficiency, significantly lower than previous research. After applying the algorithm, 24 LS-suspected cases were identified, accounting for 2.6% of tested patients and 29.3% of MMR-deficient tumors. Our study establishes the feasibility of universal testing for all new cases of CRC in detecting individuals at risk for LS, even in the absence of clinical information. To gain a comprehensive understanding of the MMR status in our population, further investigations are warranted.
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  • 文章类型: Journal Article
    结肠直肠起源的错配修复(MMRp)肿瘤是普遍但不可预测的临床挑战之一。尽管认真努力,这一类的最佳治疗方式尚未出现。MMRp的不良预后和有限的可操作性归因于低的新抗原负荷和沙漠样的微环境。这篇评论的重点是在MMRp的背景下由免疫规避机制环境精心安排的关键路障。效应免疫细胞的低密度,它们微弱的时空基础,IL-17-TGF-β信号的高压交织在一起,对现有疗法提出了严峻的挑战。由核梭杆菌修饰的微生物组生态位改变了代谢程序以维持免疫抑制状态。我们还强调了不断发展的战略,以重新极化和重振这种微环境。抗肿瘤趋化因子信号的重建,诱导T细胞活化的合理药物组合,重新编程适应不良的微生物组是这个方向上令人兴奋的发展。其他DNA损伤修复途径的替代脆弱性正在获得动力。液体活检和离体功能平台的整合提供了精确的肿瘤学见解。我们说明了MMRp-CRC的观点和不断变化的格局。这篇评论中讨论的新兴机会可以扭转潮流,有利于解决这种难以捉摸的癌症的治疗困境。
    Mismatch repair proficient (MMRp) tumors of colorectal origin are one of the prevalent yet unpredictable clinical challenges. Despite earnest efforts, optimal treatment modalities have yet to emerge for this class. The poor prognosis and limited actionability of MMRp are ascribed to a low neoantigen burden and a desert-like microenvironment. This review focuses on the critical roadblocks orchestrated by an immune evasive mechanistic milieu in the context of MMRp. The low density of effector immune cells, their weak spatiotemporal underpinnings, and the high-handedness of the IL-17-TGF-β signaling are intertwined and present formidable challenges for the existing therapies. Microbiome niche decorated by Fusobacterium nucleatum alters the metabolic program to maintain an immunosuppressive state. We also highlight the evolving strategies to repolarize and reinvigorate this microenvironment. Reconstruction of anti-tumor chemokine signaling, rational drug combinations eliciting T cell activation, and reprograming the maladapted microbiome are exciting developments in this direction. Alternative vulnerability of other DNA damage repair pathways is gaining momentum. Integration of liquid biopsy and ex vivo functional platforms provide precision oncology insights. We illustrated the perspectives and changing landscape of MMRp-CRC. The emerging opportunities discussed in this review can turn the tide in favor of fighting the treatment dilemma for this elusive cancer.
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  • 文章类型: Journal Article
    目的:估计Lynch综合征(LS)影响1-3.9%的结直肠癌(CRC)患者。LS的测试对于确定“林奇家庭”的管理和建立监视非常重要。先前的研究已经确定CRC患者的LS检测率低。这项研究旨在描述对新诊断的CRCLS测试指南的遵守情况。
    方法:2018-2022年在TeTaiTokerau进行的18岁以上结直肠腺癌患者的单机构队列研究,新西兰进行了Aotearoa。错配修复(MMR)缺陷的基线免疫组织化学(IHC)检测率,我们对MLH1缺陷病例的进一步检测和种系突变分析率进行了审核,以确定是否遵守国家指南.估计新诊断CRC中LS的发生率。
    结果:六百六十位患者有资格进行LS的通用检测,其中84%(n=553)完成了初始IHC检测。据报道,MMR缺乏的病例占20%(n=114)。89%(n=101)归因于MLH1缺乏,其中99%(n=100)进行了适当的BRAF-V600E突变检测。64%(4/11)的超甲基化测试患者进行了适当的测试。17名患者有生殖系突变分析的指征,其中只有29%(n=5)进行了测试。新诊断CRC中LS的估计发生率为0.7-3.8%。
    结论:对初始IHC检测的依从性良好。然而,有必要提高基因检测的确认率。本研究中确诊LS的发生率为0.7%,然而,这可能高达3.9%。
    OBJECTIVE: Lynch syndrome (LS) is estimated to affect 1-3.9% of patients with colorectal cancer (CRC). Testing for LS is important in determining management and establishing surveillance for \"Lynch families\". Previous studies have identified poor rates of testing for LS in CRC patients. This study aimed to describe adherence to guidelines for testing of newly diagnosed CRC for LS.
    METHODS: A single institution cohort study of patients over 18 years with colorectal adenocarcinoma from 2018-2022 in Te Tai Tokerau, Aotearoa New Zealand was conducted. Rates of baseline immunohistochemistry (IHC) testing for mismatch repair (MMR) deficiency, further testing for MLH1-deficient cases and rates of germline mutational analysis were audited to determine adherence to national guidelines. The rate of LS in newly diagnosed CRC was estimated.
    RESULTS: Six hundred and sixty patients were eligible for universal testing for LS, of which 84% (n=553) completed initial IHC testing. MMR deficiency was reported in 20% (n=114) cases. Eighty-nine percent (n=101) was attributable to MLH1 deficiency, of which 99% (n=100) were appropriately tested for BRAF-V600E mutation. Sixty-four percent (4/11) patients indicated for hypermethylation testing were appropriately tested. Seventeen patients had an indication for germline mutational analysis, of which only 29% (n=5) were tested. The estimated incidence of LS in newly diagnosed CRC was 0.7-3.8%.
    CONCLUSIONS: Compliance with initial IHC testing was good. However, there is a need to improve rates of confirmation genetic testing. The incidence of confirmed LS in this study is 0.7%, however this may be as high as 3.9%.
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  • 文章类型: Journal Article
    目的:在具有微卫星稳定性(MSS)或有效错配修复(pMMR)的结直肠癌(CRC)中,没有建立免疫检查点抑制剂(ICI)的生物标志物。因此,这项研究旨在通过分析与高度免疫原性和免疫反应有关的下调DNA修复相关基因,来确定pMMR患者ICI获益的生物标志物。并比较它们的表达水平和临床特征。
    方法:不匹配修复(MMR),肿瘤浸润淋巴细胞(TIL),在13例CRC中评估了肿瘤突变负荷(TMB),并测量了95个DNA修复相关基因的mRNA表达水平。鉴定了在高免疫原性和高免疫应答组中mRNA表达降低的DNA修复相关基因。然后,在135例CRC患者中检测了已鉴定的DNA修复相关基因的mRNA表达水平.使用mRNA表达水平进行层次聚类分析,以比较每个簇的临床病理特征。
    结果:ATR,在高免疫原性组中,LIG4和RAD52mRNA水平显著下调。GADD45B,SMUG1和XRCC6mRNA水平在高免疫应答组中显著下调。6个基因的mRNA表达减少的簇中的病例为pMMR病例。该簇中的CD8mRNA表达水平高于其他簇。
    结论:ATRmRNA表达水平降低,LIG4,RAD52,GADD45B,SMUG1和XRCC6基因与高细胞毒性T细胞和TMB水平相关,提示这些基因可作为pMMR病例ICI疗效的生物标志物。
    OBJECTIVE: There are no established biomarkers for immune checkpoint inhibitors (ICI) in colorectal cancer (CRC) with microsatellite stability (MSS) or proficient mismatch repair (pMMR). Therefore, this study aimed to identify biomarkers for ICI benefit in patients with pMMR by analyzing the down-regulated DNA repair-related genes involved in highly immunogenic and immune responses, and comparing their expression levels and clinical features.
    METHODS: Mismatch repair (MMR), tumor-infiltrating lymphocytes (TIL), and tumor mutation burden (TMB) were evaluated in 13 CRC cases and mRNA expression levels of 95 DNA repair-related genes were measured. DNA repair-related genes with reduced mRNA expression in the high immunogenicity and high immune response groups were identified. Then, the mRNA expression levels of the identified DNA repair-related genes were measured in 135 patients with CRC. Hierarchical cluster analysis was performed using the mRNA expression levels to compare the clinicopathological characteristics of each cluster.
    RESULTS: ATR, LIG4, and RAD52 mRNA levels were significantly down-regulated in the high immunogenicity group. GADD45B, SMUG1, and XRCC6 mRNA levels were significantly down-regulated in the high immune response group. Cases in the cluster with reduced mRNA expression of the six genes were pMMR cases. CD8 mRNA expression level was higher in this cluster than in the other clusters.
    CONCLUSIONS: Decreased mRNA expression levels of ATR, LIG4, RAD52, GADD45B, SMUG1, and XRCC6 genes were associated with high cytotoxic T cell and TMB levels, suggesting that these genes could serve as biomarkers for ICI efficacy in pMMR cases.
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  • 文章类型: Journal Article
    目的:在印度所有结肠癌中,微卫星不稳定性(MSI)亚型的患病率约为30%,大约是西方人口的两倍,表明有不同的分子病因。
    方法:在早期CRC(肿瘤=10,正常=7)的主要队列中确定了基于NanoString分析的泛癌差异表达(DE)谱,并与MSI状态相关。使用RT-PCR,在另一个MSI高CRC队列中验证了肿瘤特异性DE基因(n=15).
    结果:在差异表达最多的基因中,AXIN2,ETV4和RNF43是肿瘤细胞特异性信号,而一组基因包括COL11A1,COMP,INHBA,SPP1、MMP3、TLR2等为免疫细胞特异性信号,MSI和MSS组之间有差异表达。当与使用肿瘤免疫评估资源工具(TIMER)的癌症基因组图谱(TCGA)研究重叠时,用STRING进行蛋白质-蛋白质相互作用分析。db,这些基因被分离为代表性的肿瘤细胞和免疫细胞。在验证时,肿瘤特异性基因信号与TLR4表达呈负相关。
    结论:AXIN2,ETV4和RNF43在肿瘤和免疫细胞中的差异表达分布,提示印度人群早期CRC的MSI-H亚组中不止一个病理子集。
    OBJECTIVE: The prevalence of microsatellite instability (MSI) subtype among all colon cancers in India is about 30 %, approximately two times more than that of western population suggesting different molecular pathogeneses.
    METHODS: A NanoString analysis-based Pan cancer differential expression (DE) profile was determined in a primary cohort of early-stage CRC (tumor=10, normal=7), and correlated against MSI status. Using RT-PCR, tumor-specific DE genes were validated in another cohort of MSI-high CRC (n=15).
    RESULTS: Among the most differentially expressed genes, AXIN2, ETV4, and RNF43 were tumor cell-specific signals, while a set of genes including COL11A1, COMP, INHBA, SPP1, MMP3, TLR2, and others were immune cell-specific signals, that had a differential expression between MSI and MSS groups. When overlapped with The Cancer Genome Atlas (TCGA) studies using the Tumor immune estimation resource tool (TIMER), and protein-protein interaction analysis by STRING.db, these genes were segregated to representative tumor cells and immune cells. On validation, the tumor-specific gene signals were inversely associated with TLR4 expression.
    CONCLUSIONS: The differential expression distribution of AXIN2, ETV4, and RNF43 among tumor and immune cells, suggests more than one pathological subset in the MSI-H subgroup of early-stage CRC in the Indian population.
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  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    尽管在免疫治疗领域取得了快速进展,包括免疫检查点抑制在治疗多种癌症中的成功,高级别胶质瘤(HGG)的临床反应令人失望。这部分归因于大多数HGs的低肿瘤突变负荷(TMB)。超突变是一种最近表征的神经胶质瘤特征,发生在一小部分病例中,这可能为免疫疗法开辟了一条途径。这些肿瘤的显著升高的TMB最常见的原因是在广泛暴露于替莫唑胺或,不那么频繁,来自遗传性癌症易感性综合症。在这次审查中,我们讨论了HGs超突变的遗传学和病因学,强调产生的基因组特征,以及这些患者人群中免疫肿瘤学研究的状态和未来方向。
    Despite rapid advances in the field of immunotherapy, including the success of immune checkpoint inhibition in treating multiple cancer types, clinical response in high-grade gliomas (HGGs) has been disappointing. This has been in part attributed to the low tumor mutational burden (TMB) of the majority of HGGs. Hypermutation is a recently characterized glioma signature that occurs in a small subset of cases, which may open an avenue to immunotherapy. The substantially elevated TMB of these tumors most commonly results from alterations in the DNA mismatch repair pathway in the setting of extensive exposure to temozolomide or, less frequently, from inherited cancer predisposition syndromes. In this review, we discuss the genetics and etiology of hypermutation in HGGs, with an emphasis on the resulting genomic signatures, and the state and future directions of immuno-oncology research in these patient populations.
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  • 文章类型: Journal Article
    种系(林奇综合征,LS)和体细胞缺陷的错配修复蛋白(MMRd)与结直肠癌和子宫内膜癌有关;然而,它们对亚洲人群的预后影响尚不清楚.这项前瞻性队列研究旨在确定怀疑LS的癌症患者中种系和体细胞MMRd的患病率和结果。纳入疑似LS的结直肠癌或子宫内膜癌患者,并对病理样本的一部分(pMMRd)进行种系MMRd(gMMRd)的基因测序和MMR蛋白的免疫组织化学染色。在451名患者中,36例患者均为gMMRd(+)。与gMMRd(-)患者相比,gMMRd(+)患者的10年无复发生存率明显较高(100%vs.77.9%;p=0.006),而10年总生存率相似(100%vs.90.9%;p=0.12)。在102名具有pMMR状态的gMMRd(-)患者中,13.7%为pMMRd(+)。gMMRd(-)pMMRd(-)患者的5年无复发生存率为62.9%,gMMRd(-)pMMRd(-)患者的5年无复发生存率为35.0%,均低于gMMRd(+)患者(100%;p<0.001)。这项研究表明,LS在结直肠癌和子宫内膜癌患者中具有良好的预后,并强调了在检测体细胞MMRd后进行种系遗传检测的重要性。
    Germline (Lynch syndrome, LS) and somatic deficiencies of mismatch repair proteins (MMRd) are linked to colorectal and endometrial cancer; however, their prognostic impact in Asian populations remains unclear. This prospective cohort study aimed to determine the prevalence and outcome of germline and somatic MMRd in cancer patients suspected of LS. Patients with colorectal or endometrial cancer suspected of LS were enrolled and underwent gene sequencing for germline MMRd (gMMRd) and immunohistochemistry staining of MMR proteins in a subset of the pathological samples (pMMRd). Among the 451 enrolled patients, 36 patients were gMMRd (+). Compared with gMMRd (-) patients, the 10-year relapse-free survival in gMMRd (+) patients was significantly higher (100% vs. 77.9%; p = 0.006), whereas the 10-year overall survival was similar (100% vs. 90.9%; p = 0.12). Among the 102 gMMRd (-) patients with available pMMR status, 13.7% were pMMRd (+). The 5-year relapse-free survival was 62.9% in gMMRd (-) pMMRd (+) patients and 35.0% in gMMRd (-) pMMRd (-) patients, both lower than gMMRd (+) patients (100%; p < 0.001). This study showed that having LS confers a favorable outcome in colorectal and endometrial cancer patients and highlights the importance of germline genetic testing following the detection of somatic MMRd.
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