small interference RNA

小干扰 RNA
  • 文章类型: Journal Article
    小干扰RNA(siRNA)是一类通过RNA干扰机制引起mRNA降解的短双链RNA分子,是一种有前途的治疗方式。RBD1016是一种临床开发用于治疗慢性乙型肝炎病毒(HBV)感染的siRNA药物,它含有与N-乙酰葡糖胺缀合的部分,可以促进其肝脏递送。我们的目的是在临床前动物中构建RBD1016的半机械模型,为了阐明小鼠的药代动力学/药效学(PK/PD)谱和猴子的PK谱,这为RBD1016PK和PD从临床前阶段到临床阶段的潜在转化奠定了基础。提出的半机械PK/PD模型很好地拟合了HBV转基因小鼠中的PK和PD数据,并很好地描述了猴子中的血浆和肝脏浓度。模拟结果表明,我们的模型对小鼠多次给药后的乙型肝炎表面抗原(HBsAg)水平具有合理的预测能力。RBD1016的进一步PK和PD数据,包括临床数据,将有助于完善这里介绍的模型。我们目前的工作集中在RBD1016的模型构建上,我们预计该模型可以应用于其他GalNAc-siRNA药物。
    Small interference RNA (siRNA) is a class of short double-stranded RNA molecules that cause mRNA degradation through an RNA interference mechanism and is a promising therapeutic modality. RBD1016 is a siRNA drug in clinical development for the treatment of chronic Hepatitis B Virus (HBV) infection, which contains a conjugated with N-acetylglucosamine moiety that can facilitate its hepatic delivery. We aimed to construct a semi-mechanistic model of RBD1016 in pre-clinical animals, to elucidate the pharmacokinetic/pharmacodynamic (PK/PD) profiles in mice and PK profiles in monkeys, which can lay the foundation for potential future translation of RBD1016 PK and PD from the pre-clinical stage to the clinic stage. The proposed semi-mechanistic PK/PD model fitted PK and PD data in HBV transgenic mice well and described plasma and liver concentrations in the monkeys well. The simulation results showed that our model has a reasonable predictive ability for Hepatitis B surface antigen (HBsAg) levels after multiple dosing in mice. Further PK and PD data for RBD1016, including clinical data, will assist in refining the model presented here. Our current effort focused on model building for RBD1016, we anticipate that the model could apply to other GalNAc-siRNA drugs.
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  • 文章类型: Journal Article
    昆虫特异性病毒(ISV)是最有前途的生物防治昆虫的药剂之一。大量分布在吸血昆虫中。然而,在Riptortuspedestris(Fabricius)中报道了很少的ISV,威胁大豆的主要害虫之一,造成产量和品质的巨大损失。在这项工作中,从中国六个大豆产区采集了稻田Riptortuspedestris,和他们的病毒学分析与metatranscriptomy方法。总之,发现了7种新的昆虫RNA病毒,其中三个具有完整的RNA依赖性RNA聚合酶(RdRp)和几乎全长的基因组序列,被命名为Riptortuspedestrisalphadrosrha样病毒1(RpALv1),鱼腥草样病毒2型(RpALv2)和鱼腥草样病毒(RiALv)。三个鉴定的新型ISV属于弹状病毒科,系统发育树分析表明,它们聚集成新的不同的进化枝。有趣的是,对病毒来源的小干扰RNA(vsiRNAs)的分析表明,只有RiALv来源的siRNA表现出22nt长度偏好,而在RpALv1和RpALv2中未观察到明确的21或22nt峰,这表明基于siRNA的抗病毒免疫的复杂性。总之,这项研究有助于更好地了解R.pedestris的微环境,并为开发潜在的大豆昆虫特异性生物防治剂提供病毒信息。
    Insect-specific virus (ISV) is one of the most promising agents for the biological control of insects, which is abundantly distributed in hematophagous insects. However, few ISVs have been reported in Riptortus pedestris (Fabricius), one of the major pests threatening soybeans and causing great losses in yield and quality. In this work, field Riptortus pedestris was collected from six soybean-producing regions in China, and their virome was analyzed with the metatranscriptomic approach. Altogether, seven new insect RNA viruses were identified, three of which had complete RNA-dependent RNA polymerase (RdRp) and nearly full-length genome sequences, which were named Riptortus pedestris alphadrosrha-like virus 1 (RpALv1), Riptortus pedestris alphadrosrha-like virus 2 (RpALv2) and Riptortus pedestris almendra-like virus (RiALv). The three identified novel ISVs belonged to the family Rhabdoviridae, and phylogenetic tree analysis indicated that they were clustered into new distinct clades. Interestingly, the analysis of virus-derived small-interfering RNAs (vsiRNAs) indicated that only RiALv-derived siRNAs exhibited 22 nt length preference, whereas no clear 21 or 22 nt peaks were observed for RpALv1 and RpALv2, suggesting the complexity of siRNA-based antiviral immunity in R. pedestris. In conclusion, this study contributes to a better understanding of the microenvironment in R. pedestris and provides viral information for the development of potential soybean insect-specific biocontrol agents.
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  • 文章类型: Journal Article
    Background: RNA interference (RNAi) therapy has tremendous potential in treating diseases that are characterized by overexpression of genes. However, the biggest challenge to utilize the therapy is to engineer delivery systems that can efficiently transport small interfering RNA (siRNA) to appropriate target sites. Our objective in this study was to develop and evaluate multi-compartmental systems for the oral delivery of siRNA that targets the overexpressed TG2 gene (TG2-siRNA) in the small intestine for the treatment of celiac disease (CD). Materials and Methods: Two types of multicompartmental systems were developed and evaluated: (1) a solid-in-solid multicompartmental system featuring \"nanoparticle in microsphere oral system (NiMOS)\" where type B gelatin nanoparticles containing TG2-siRNA (TG2-NiMOS) were encapsulated within poly(ɛ-caprolactone) (PCL) based microspheres, and (2) a solid-in-liquid multicompartmental system, \"Nanoparticle-in-Emulsion (NiE)\" consisting of type-B gelatin nanoparticles containing TG2-siRNA encapsulated within safflower oil containing water-in-oil-in-water (W/O/W) multiple emulsion (TG2-NiE). Results: Evaluation of the biodistribution and pharmacokinetics (PK) after a single oral dose of siRNA containing multicompartmental systems to C57BL/6 mice showed that TG2-siRNA was delivered to the small intestine (duodenum, jejunum and ileum), and colon with minimal systemic exposure via both TG2-NiE and TG2-NiMOS systems. TG2-siRNA exposure (AUC0-t) in the duodenum, jejunum, ileum and colon was 56.4-, 34.3-, 85.5- and 35.5-fold greater for the TG2-NiMOS formulation, relative to the TG2-NiE formulation. Conclusion: The results of this study suggest that TG2-NiMOS formulation was more superior than TG2-NiE formulation in facilitating intestinal delivery of siRNA via the oral route of administration and can be potentially used in the treatment of CD.
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  • 文章类型: Journal Article
    Cell-Penetrating Peptides (CPP) are valuable tools capable of crossing the plasma membrane to deliver therapeutic cargo inside cells. Small interfering RNAs (siRNA) are double-stranded RNA molecules capable of silencing the expression of a specific protein triggering the RNA interference (RNAi) pathway, but they are unable to cross the plasma membrane and have a short half-life in the bloodstream. In this overview, we assessed the many different approaches used and developed in the last two decades to deliver siRNA through the plasma membrane through different CPPs sorted according to three different loading strategies: covalent conjugation, complex formation, and CPP-decorated (functionalized) nanocomplexes. Each of these strategies has pros and cons, but it appears the latter two are the most commonly reported and emerging as the most promising strategies due to their simplicity of synthesis, use, and versatility. Recent progress with siRNA delivered by CPPs seems to focus on targeted delivery to reduce side effects and amount of drugs used, and it appears to be among the most promising use for CPPs in future clinical applications.
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    Cardiac thyrotropin-releasing hormone (TRH) is a tripeptide with still unknown functions. We demonstrated that the left ventricle (LV) TRH system is hyperactivated in spontaneously hypertensive rats and its inhibition prevented cardiac hypertrophy and fibrosis. Therefore, we evaluated whether in vivo cardiac TRH inhibition could improve myocardial function and attenuate ventricular remodeling in a rat model of myocardial infarction (MI).
    In Wistar rats, MI was induced by a permanent left anterior descending coronary artery ligation. A coronary injection of a specific small interfering RNA against TRH was applied simultaneously. The control group received a scrambled small interfering RNA. Cardiac remodeling variables were evaluated one week later. In MI rats, TRH inhibition decreased LV end-diastolic (1.049 ± 0.102 mL vs 1.339 ± 0.102 mL, P < .05), and end-systolic volumes (0.282 ± 0.043 mL vs 0.515 ± 0.037 mL, P < .001), and increased LV ejection fraction (71.89 ± 2.80% vs 65.69 ± 2.85%, P < .05). Although both MI groups presented similar infarct size, small interfering RNA against TRH treatment attenuated the cardiac hypertrophy index and myocardial interstitial collagen deposition in the peri-infarct myocardium. These effects were accompanied by attenuation in the rise of transforming growth factor-β, collagen I, and collagen III, as well as the fetal genes (atrial natriuretic peptide, B-type natriuretic peptide, and beta myosin heavy chain) expression in the peri-infarct region. In addition, the expression of Hif1α and vascular endothelial growth factor significantly increased compared with all groups.
    Cardiac TRH inhibition improves LV systolic function and attenuates ventricular remodeling after MI. These novel findings support the idea that TRH inhibition may serve as a new therapeutic strategy against the progression of heart failure.
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  • 文章类型: Journal Article
    是所有丙型肝炎病毒(HCV)基因型和亚基因型中最保守的区域,HCV基因组的5'非翻译区(5'UTR)表明它作为基于RNA干扰的抗mRNA治疗策略的潜在靶标的重要性。第一个基于小干扰RNA(siRNA)的遗传性转甲状腺素蛋白介导的淀粉样变性治疗的临床应用的出现和批准,提高了对这种方法对抗高度易感病毒如HCV的希望。我们调查了来自沙特人群的HCV亚型4a分离株的5'UTR内的内部核糖体进入位点(IRES)结构的茎环(SLs)II和III核苷酸基序的共有siRNA的抗病毒潜力。siRNA对病毒复制和全长HCV基因组翻译的抑制作用在一个主管,持久性,和可再生的Huh-7细胞培养系统维持一个月。通过在Huh-7细胞中靶向IRES的SL-III核苷酸基序的siRNA证明了HCV-IRES克隆的RNA转录物水平的最大抑制以及病毒复制和全长病毒基因组翻译的沉默。siRNAUsi-169在转染后24小时降低了HCV-IRES克隆的5'UTRRNA转录本水平,在转染后24小时降低了75%(P<0.001),在48小时处理时降低了80%(P<0.001)Huh-7细胞。在24小时和48小时的时间跨度,与构建的载体(即pCR3.1/GFP/5'UTR)和siRNAUsi-169共转染的Huh-7细胞中,5'UTR标记的GFP蛋白表达从70%显着降低至80%。在持续的Huh-7细胞培养系统中,胞浆内siRNAUsi-169活性也显着降解了病毒复制被90%以上(P<0.001)和HCV核心(C)和高变包膜糖蛋白(E1和E2)表达。研究结果揭示,靶向HCV亚型4a沙特分离株的5'UTR-IRES的siRNA在持续的体外Huh-7组织培养系统中显示出HCV复制的有效沉默和病毒翻译的阻断。此外,我们还阐明,siRNA沉默病毒mRNA不仅抑制病毒复制,而且阻断病毒翻译。结果表明,siRNA有效的抗病毒活性应被认为是一种有效的基于抗mRNA的治疗策略,用于针对沙特阿拉伯研究较少和难以治疗的HCV亚型4a分离株的进一步体内研究。
    Being the most conserved region of all hepatitis C virus (HCV) genotypes and sub-genotypes, the 5\' untranslated region (5\' UTR) of HCV genome signifies it\'s importance as a potential target for anti-mRNA based treatment strategies like RNA interference. The advent and approval of first small interference RNA (siRNA) -based treatment of hereditary transthyretin-mediated amyloidosis for clinical use has raised the hopes to test this approach against highly susceptible viruses like HCV. We investigated the antiviral potential of consensus siRNAs targeted to stem-loops (SLs) II and III nucleotide motifs of internal ribosome entry site (IRES) structure within 5\' UTR of HCV sub-genotype 4a isolates from the Saudi population. siRNA inhibitory effects on viral replication and translation of full-length HCV genome were determined in a competent, persistent, and reproducible Huh-7 cell culture system maintained for one month. Maximal inhibition of RNA transcript levels of HCV-IRES clones and silencing of viral replication and translation of full-length virus genome was demonstrated by siRNAs targeted to SL-III nucleotide motifs of IRES in Huh-7 cells. siRNA Usi-169 decreased 5\' UTR RNA transcript levels of HCV-IRES clones up to 75% (P < 0.001) at 24 h post-transfection and 80% (P < 0.001) at 48 h treatment in Huh-7 cells. 5\' UTR-tagged GFP protein expression was significantly decreased from 70 to 80% in Huh-7 cells co-transfected with constructed vectors (i.e. pCR3.1/GFP/5\' UTR) and siRNA Usi-169 at 24 h and 48 h time-span. Viral replication was inhibited by more than 90% (P < 0.001) and HCV core (C) and hypervariable envelope glycoproteins (E1 and E2) expression was also significantly degraded by intracytoplasmic siRNA Usi-169 activity in persistent Huh-7 cell culture system. The findings unveil that siRNAs targeted to 5\' UTR-IRES of HCV sub-genotype 4a Saudi isolates show potent silencing of HCV replication and blocking of viral translation in a persistent in-vitro Huh-7 tissue culture system. Furthermore, we also elucidated that siRNA silencing of viral mRNA not only inhibits viral replication but also blocks viral translation. The results suggest that siRNA potent antiviral activity should be considered as an effective anti-mRNA based treatment strategies for further in-vivo investigations against less studied and harder-to-treat HCV sub-genotype 4a isolates in Saudi Arabia.
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  • 文章类型: Journal Article
    类风湿关节炎(RA)是临床上常见的以持续滑膜炎为主要表现的自身免疫系统炎症性疾病,软骨损伤甚至畸形。尽管RA的临床治疗取得了重大进展,长期服用抗风湿药物会引起一系列问题,包括感染,胃肠道反应,肝肾功能异常.RNA搅扰(RNAi)药物的涌现为RA的医治带来了新的愿望。设计合理的RNAi药物载体将大大拓展RNAi的应用前景。纳米粒子作为一种有前途的药物载体为RNAi药物提供了可靠的支持。本文综述了RA的发病机制,作为小干扰RNA(siRNA)设计的可能靶标。同时,该综述还分析了近年来用于siRNA载体的纳米颗粒,为下一步智能纳米载体的发展奠定基础和展望。
    Rheumatoid arthritis (RA) is a common clinical inflammatory disease of the autoimmune system manifested by persistent synovitis, cartilage damage and even deformities. Despite significant progress in the clinical treatment of RA, long-term administration of anti-rheumatic drugs can cause a series of problems, including infections, gastrointestinal reactions, and abnormal liver and kidney functions. The emergence of RNA interference (RNAi) drugs has brought new hope for the treatment of RA. Designing a reasonable vector for RNAi drugs will greatly expand the application prospects of RNAi. Nanoparticles as a promising drug carrier provide reliable support for RNAi drugs. The review summarizes the pathogenesis of RA as a possible target for small interference RNA (siRNA) design. At the same time, the review also analyzes the nanoparticles used in siRNA carriers in recent years, laying the foundation and prospect for the next step in the development of intelligent nanocarriers.
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  • 文章类型: Journal Article
    网状病毒是一组拟议的昆虫特异性病毒,可以分为两个不同的系统发育进化枝,Nelorpivirus和Sandewavirus。网状病毒以其广泛的地理分布和在吸血昆虫中的广泛宿主范围而闻名。在这项研究中,通过从北极黄河站收集的单个dungfly(Scathophagafurcata)的RNA提取和测序,鉴定了来自每个进化枝的两个新型negesirvirus的完整基因组,这些基因组是第一个被发现的来自寒冷地区的神经病毒。Nelorpivirusdungfly1(NVD1)和Sandevavirusdungfly1(SVD1)具有典型的negevirus基因组组织,并且病毒转录本的覆盖率很高。来自两种病毒的小干扰RNA很容易在S.furcata中检测到,清楚地表明negevirus是通过宿主抗病毒RNA干扰(RNAi)途径靶向的。这些结果以及随后对公共数据库和已发表的病毒学数据的计算机模拟分析(研究)表明,类巢病毒的宿主除了先前报道的嗜血昆虫外,还包括属于许多目的昆虫以及各种非昆虫。系统发育分析揭示了至少另外三组雀巢病毒,以及几个解决不良的孤立分支,填补了Kitaviridae中的negesirus和植物相关病毒的两个亚组内的空白。这项研究的结果将有助于更好地了解地理分布,主机范围,negevirus的进化和宿主抗病毒免疫反应。
    Negeviruses are a proposed group of insect-specific viruses that can be separated into two distinct phylogenetic clades, Nelorpivirus and Sandewavirus. Negeviruses are well-known for their wide geographic distribution and broad host range among hematophagous insects. In this study, the full genomes of two novel negeviruses from each of these clades were identified by RNA extraction and sequencing from a single dungfly (Scathophaga furcata) collected from the Arctic Yellow River Station, where these genomes are the first negeviruses from cold zone regions to be discovered. Nelorpivirus dungfly1 (NVD1) and Sandewavirus dungfly1 (SVD1) have the typical negevirus genome organization and there was a very high coverage of viral transcripts. Small interfering RNAs derived from both viruses were readily detected in S. furcata, clearly showing that negeviruses are targeted by the host antiviral RNA interference (RNAi) pathway. These results and subsequent in silico analysis (studies) of public database and published virome data showed that the hosts of nege-like viruses include insects belonging to many orders as well as various non-insects in addition to the hematophagous insects previously reported. Phylogenetic analysis reveals at least three further groups of negeviruses, as well as several poorly resolved solitary branches, filling in the gaps within the two sub-groups of negeviruses and plant-associated viruses in the Kitaviridae. The results of this study will contribute to a better understanding of the geographic distribution, host range, evolution and host antiviral immune responses of negeviruses.
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  • 文章类型: Journal Article
    Novel findings reveal important functional roles for β-arrestin 1 and β-arrestin 2 in the regulation of insulin secretion, β-cell survival, and β-cell mass plasticity not only by glucose but also by G-protein-coupled receptors, such as the glucagon-like peptide-1 (GLP-1) and the pituitary adenylate cyclase-activating polypeptide (PACAP) receptors or GPR40, or tyrosine kinase receptors, such as the insulin receptor. Here, we describe experimental protocols to knock down β-arrestins by small interference RNA, to follow subcellular localization of β-arrestins in the cytosol and nucleus of the insulinoma INS-1E rat pancreatic β-cell line, and to analyze β-arrestin protein expression by Western blot using INS-1E cells and isolated mouse or human pancreatic islets. We also provide details on how to genotype β-arrestin 2 knockout (Arrb2-/-) mice and to evaluate β-arrestin-mediated roles in β-cell mass plasticity and β-cell signaling using immunocytochemistry on pancreatic sections or on primary dispersed β-cells from wild-type mice and Arrb2-/- mice.
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  • 文章类型: Journal Article
    阳离子脂质体已经成为运输大量小药物分子和大分子的重要非病毒载体。这些胶体纳米颗粒在治疗中表现出的日益增长的兴趣取决于它们与脂质体的结构相似性。阳离子囊泡通常由非离子表面活性剂分子的自组装获得。该过程不仅可以由这些表面活性剂的性质控制,还可以由其他因素控制,例如添加剂的存在。包封的疏水性或亲水性分子的制剂制备和性质。这篇综述旨在为使用阳离子脂质体进行基因递送提供最新信息,特别强调改善反义寡核苷酸(ASO)的运输,小干扰RNA(siRNA),适体和质粒(pDNA)。
    Cationic niosomes have become important non-viral vehicles for transporting a good number of small drug molecules and macromolecules. Growing interest shown by these colloidal nanoparticles in therapy is determined by their structural similarities to liposomes. Cationic niosomes are usually obtained from the self-assembly of non-ionic surfactant molecules. This process can be governed not only by the nature of such surfactants but also by others factors like the presence of additives, formulation preparation and properties of the encapsulated hydrophobic or hydrophilic molecules. This review is aimed at providing recent information for using cationic niosomes for gene delivery purposes with particular emphasis on improving the transportation of antisense oligonucleotides (ASOs), small interference RNAs (siRNAs), aptamers and plasmids (pDNA).
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