pCR

PCR
  • 文章类型: English Abstract
    这篇综述的重点是描述新的商用POC型分子诊断系统,该系统可以在社区药房中轻松实施,并有可能扩大制药服务的组合,并为改善公共卫生做出重大贡献。对PCR以外的新分子诊断技术的了解相对尚待探索。然而,可用的选择多种多样,并且已经达到了大规模使用的足够技术成熟度。SARS-CoV-2大流行给市场带来了诊断测试,在某些情况下,几十年来一直专门用于研究。等温核酸扩增技术继续发展,很可能在未来几年中,我们将看到其使用呈指数级增长,以及开发新的改进,进一步简化和降低每个测定的成本。此外,我们不能忽视这样一个事实,在新冠肺炎大流行期间,公众已经习惯于通过社区药房等大众分销渠道进行自我诊断。这可以使该部门对其他疾病开放-例如性传播疾病或动物健康-,食物控制,水和空气污染(真菌)或过敏原的存在。对它们的了解是制药部门必不可少的技术监督策略。
    This review focuses on describing new commercially available POC-type molecular diagnostic systems that can be easily implemented in community pharmacies and have the potential to expand the portfolio of pharmaceutical services and make a significant contribution to the improvement of public health.Knowledge of new molecular diagnostic techniques other than PCR is relatively unexplored. However, the available options are diverse and have reached sufficient technological maturity for large-scale use. The SARS-CoV-2 pandemic has brought diagnostic tests to market that, in some cases, have been used exclusively in research for decades.Isothermal nucleic acid amplification technology continues to evolve and it is likely that in the coming years we will witness an exponential increase in its use, as well as the development of new improvements that further simplify and reduce the cost of each assay.Furthermore, we cannot ignore the fact that during the COVID-19 pandemic, the public has become accustomed to self-diagnosing through mass distribution channels such as community pharmacies. Which can open the sector to other diseases - such as sexually transmitted diseases or animal health -, food control, water and air contamination (fungi) or the presence of allergens.Knowledge of them is an essential technological surveillance strategy for the pharmaceutical sector.
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  • 文章类型: Journal Article
    毛滴虫病是一种影响人类生殖和泌尿系统的寄生虫病,代表世界范围内大量非病毒性性传播感染。鉴于其对生殖健康的影响,关于阴道毛滴虫患病率的现有信息有限,这项研究旨在评估在大不里士卫生中心转诊的女性中阴道毛虫的患病率,伊朗西北部。对在大不里士29Bahman医院就诊的448名可疑妇女进行了研究,伊朗西北部,2020年9月至2021年9月。根据研究方案收集人口统计学数据。使用无菌拭子获得阴道分泌物,采用巴氏染色法和PCR法测定阴道毛虫的患病率。在研究的448例病例中,48个(10.7%)样本被怀疑为阴道毛虫感染,而4例(0.89%)使用PCR方法证实。感染者的平均年龄为41.7±9.4岁。炎症之间没有观察到统计学相关性,避孕和感染方法(p=0.8)。本研究显示,在研究人群中,阴道毛虫感染的患病率相对较低。此外,PCR方法的使用可有益于确认可疑样品。
    Trichomoniasis is a parasitic disease that affects the human reproductive and urinary systems, representing a substantial non-viral sexually transmitted infection worldwide. Given its impact on reproductive health, and the limited available information on the prevalence of Trichomonas vaginalis, this study aimed to evaluate the prevalence of T. vaginalis among women referred to health centers in Tabriz, Northwest Iran. Study was conducted on 448 suspicious women who attended to 29Bahman hospital in Tabriz, Northwest Iran, during September 2020 to September 2021. Demographic data were collected according to the study protocol. Vaginal discharges were obtained using sterile swabs, and the prevalence of T. vaginalis was determined using Papanicolauo staining and PCR method. Among the 448 cases studied, 48 (10.7%) samples were suspected as a T. vaginalis infection, while 4 (0.89%) confirmed using the PCR method. The mean age of infected individuals was 41.7 ± 9.4 years. No statistical correlation was observed between inflammation, method of contraception and infection (p = 0.8). The present study revealed a relatively low prevalence of T. vaginalis infection within the study population. Additionally, the utilization of the PCR method can be beneficial in confirming suspected samples.
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  • 文章类型: Journal Article
    牛Theileriosis是由细胞内寄生虫引起的原生动物疾病(Theileriaspp。)通过蜱传播,被认为是最重要的寄生虫病之一,可能危及埃及牛群业。本研究是为了对牛theileriosis及其相关危险因素进行分子调查(季节变化,地理位置,品种,年龄,性别,蜱虫侵扰,和杀螨剂应用)在三个埃及省,Beni-Suef,Al-Faiyum,和Al-Minya为期一年,从2021年12月延长至2022年11月,此外,Theileria分离株的遗传多样性。总共对961头牛进行了Theileria感染的临床检查,微观上,并通过聚合酶链反应(PCR)使用18SrRNA基因进行pirospomaDNA检测,rRNA基因小亚基的Theileria属特异性引物,和Tams-1基因的环生Theileria特异性引物。牛的患病率为9.26%,11.86%使用Giemsa染色的血涂片和PCR,分别。当通过特异性引物筛选时,通过Theileria属特异性引物筛选的所有阳性样品均为T.annulata阳性。基于分子筛选,季节,牛品种和杀螨剂的应用被认为是T.annulata感染的危险因素,而局部性,年龄,性别和蜱虫感染对疾病的发生影响不大。鉴定了一种基于Tam-1基因的潜在的新的环状念珠菌单倍型,其登录号为OR364144和OR915851。因此,T.annulata是唯一发现的Theileria物种,在牛群中起着重大问题。这项研究可以作为未来研究未开发区域和不同动物物种的基础,以制定结构良好的预防和控制措施。
    Bovine theileriosis is a protozoan disease caused by the intracellular parasite (Theileria spp.) transmitted by ticks and it is considered one of the most significant parasitic diseases, potentially endangering Egyptian cattle herd industry. The present study was conducted for a molecular survey of bovine theileriosis and its associated risk factors (season variations, geographical locations, breeds, age, sex, tick infestation, and acaricide applications) in three Egyptian governorates, Beni-Suef, Al-Faiyum, and Al-Minya for a year extended from December 2021 to November 2022, in addition, genetic diversity of Theileria isolates. A total of 961 cattle were examined for Theileria infection clinically, microscopically, and by Polymerase Chain Reaction (PCR) using 18S rRNA gene for piroplasms DNA detection, Theileria genus-specific primers of the small subunit of rRNA gene, and Theileria annulata specific primers of the Tams-1 gene. The prevalence rate of bovine theileriosis was 9.26%, and 11.86% using Giemsa-stained blood smear and PCR, respectively. All positive samples screened by Theileria genus-specific primers were positive for T. annulata when screened by the specific primers. Based on molecular screening, season, cattle breeds and acaricide applications were considered risk factors for T. annulata infection, while locality, age, sex and tick infestation had insignificant effects with the occurrence of the disease. A potential novel T. annulata haplotype based on the Tam-1 gene was identified with accession numbers OR364144 and OR915851. Therefore, T. annulata was the only Theileria species found and played a significant problem in the cattle population. This study could be the basis for future studies on unexplored regions and different animal species for well-structured prevention and control measures.
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  • 文章类型: Journal Article
    探测生命推动了几个世纪的研究和探索,但是最近尝试编译和生成一个总结生活特征的框架,旨在为地球以外的生命探测任务制定策略,忽视了一个关键的生活特征:行为。然而,一些行为,如生物矿化或运动偶尔被提出作为生物特征来检测生命。这里,我们利用特定的出租车运动行为,趋磁,通过实验提供洞察力来支持行为作为明确的,敏感的生物特征,和磁力作为预筛选选项。使用趋磁细菌物种,磁螺旋藻,我们进行了一项实验室敏感性实验,将PCR与悬滴行为测定进行了比较,使用稀释系列。悬滴行为测定在视觉上显示了MTB朝向磁极的运动性。我们的发现表明,与已建立的PCR方案相比,行为测定在检测磁性分枝杆菌方面表现出更高的灵敏度。虽然两种方法在高浓度下具有相似的检测灵敏度,在≥10-7倍稀释时,行为方法被证明更敏感。即使在10-9稀释样品时,行为方法也可以检测细菌。从Hula山谷的环境样品获得了可比的结果。我们提出行为线索作为有价值的生物特征,在地球上未开发的水生栖息地中进行生命检测,并激发和支持有关如何检测地球外现存生命的讨论。通用和强大的行为测定可以代表方法学革命。
    Detecting life has driven research and exploration for centuries, but recent attempts to compile and generate a framework that summarizes life features, aimed to develop strategies for life detection missions beyond planet Earth, have disregarded a key life feature: behavior. Yet, some behaviors such as biomineralization or motility have occasionally been proposed as biosignatures to detect life. Here, we capitalize on a specific taxis\' motility behavior, magnetotaxis, to experimentally provide insights in support of behavior as an unambiguous, sensitive biosignature, and magnetic forces as a prescreening option. Using a magnetotactic bacterial species, Magnetospirillum magneticum, we conducted a lab sensitivity experiment comparing PCR with the hanging drop behavioral assay, using a dilution series. The hanging drop behavioral assay visually shows the motility of MTB toward magnetic poles. Our findings reveal that the behavioral assay exhibits higher sensitivity in the detection of M. magneticum when compared to the established PCR protocol. While both methods present similar detection sensitivities at high concentrations, at ≥ 10-7 fold dilutions, the behavioral method proved more sensitive. The behavioral method can detect bacteria even when samples are diluted at 10-9. Comparable results were obtained with environmental samples from the Hula Valley. We propose behavioral cues as valuable biosignatures in the ongoing efforts of life detection in unexplored aquatic habitats on Earth and to stimulate and support discussions about how to detect extant life beyond Earth. Generic and robust behavioral assays can represent a methodological revolution.
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  • 文章类型: Published Erratum
    [这更正了文章DOI:10.3389/fvets.2023.1266499。].
    [This corrects the article DOI: 10.3389/fvets.2023.1266499.].
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  • 文章类型: Journal Article
    血友病B(Hb)是一种由FIX基因缺陷引起的遗传性出血性疾病,导致严重的凝血功能障碍。本研究设计了8对覆盖FIX基因8个外显子的引物,采用PCR和DNA测序技术检测31例HB患者的FIX基因突变。在Blast上使用Chromas软件将测序结果与正常序列进行比较以鉴定突变位点。研究结果表明,在中国人群中,CpG二核苷酸区是突变热点,第192核苷酸(F192)是二核苷酸多态性位点。致病突变包括点突变,删除,插入,和影响氨基酸或剪接位点的突变。对于只有多态位点的情况,需要进一步的外显子测序.这项研究为全球HB数据库增加了新的突变数据,支持对FIX基因突变种族差异的研究,并有助于国内HB统计。该结果有助于理解FIX基因在凝血中的作用,阐明HB发病机制,并为未来的基因治疗提供基础。
    Hemophilia B (HB) is an inherited bleeding disorder caused by defects in the FⅨ gene, leading to severe coagulation dysfunction. This study designed eight pairs of primers covering eight exons of the FⅨ gene and used PCR and DNA sequencing to detect FⅨ gene mutations in 31 HB patients. Sequencing results were compared with normal sequences using Chromas software on Blast to identify mutation sites. Findings revealed the CpG dinucleotide region as a mutation hotspot and the 192nd nucleotide (FⅨ192) as a dinucleotide polymorphism site in the Chinese population. Pathogenic mutations included point mutations, deletions, insertions, and mutations affecting amino acids or splicing sites. For cases with only polymorphic sites, further exon sequencing is needed. This study adds new mutation data to the global HB database, supports research on racial differences in FⅨ gene mutations, and contributes to domestic HB statistics. The results aid in understanding the FⅨ gene\'s role in coagulation, elucidating HB pathogenesis, and providing a basis for future gene therapy.
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  • 文章类型: Case Reports
    在对野生动植物进行被动健康监测期间,在斯洛文尼亚自由生活的ro(Capreoluscapreolus)的食道中发现了成年雌性和雄性巩膜线虫。巩膜属是通过光学显微镜根据寄生虫前部的属特异性角质岩确定的。分子方法被用来确认贡古兰pulchrum物种,具有人畜共患潜力。虽然巩膜属物种被认为是常见的,并且分布在世界各地,这是G.pulchrum在斯洛文尼亚境内的动物中的第一份报告,也是世界上r的第一份分子报告。寄生虫很可能被诊断不足,误诊或被忽视,因为动物很少或没有临床症状和轻微的病理损伤。屠宰场工人,猎人和兽医应该意识到这种难以捉摸的寄生虫。因此,应更仔细地检查和切除动物的上消化道。
    Adult female and male Gongylonema nematodes were found in the oesophagus of a free-living roe deer (Capreolus capreolus) in Slovenia during passive health surveillance of wildlife. The genus Gongylonema was determined by light microscopy based on the genus-specific cuticular bosses in the anterior part of the parasite. Molecular methods were used to confirm the species Gongylonema pulchrum, which has zoonotic potential. Although Gongylonema species are considered common and distributed worldwide, this is the first report of G. pulchrum in an animal on the territory of Slovenia and the first molecular report in a roe deer worldwide. The parasite is likely to be underdiagnosed, misdiagnosed or goes unnoticed as the animals show little or no clinical signs and minor pathological lesions. Slaughterhouse workers, hunters and veterinarians should be aware of this elusive parasite. Examination and evisceration of the upper digestive tract of animals should therefore be carried out more carefully.
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  • 文章类型: Journal Article
    OvisBabesia,由法氏囊蜱传播,是绵羊巴贝斯虫病的病原体,一种以发烧为特征的疾病,贫血,血红蛋白尿症,和高死亡率的羊。这项研究调查了在没有治疗的情况下存活的巴贝斯虫病的绵羊是否可以在以后的季节中成为无卵黄双歧杆菌寻求寄主的法氏囊幼虫的感染源。三只供体绵羊被实验感染了B.ovis,六个月后,通过血液和蜱传播实验评估了双歧杆菌的持久性。将供体绵羊的血液静脉注射到三只受体绵羊中,而供体绵羊也感染了无卵器的法氏囊幼虫。成虫蜕皮成虫,新的受体绵羊被这些蜱感染。使用显微镜,血清学,和分子方法。在接受血液的受体绵羊中证实了B.Ovis的存在,导致两种临床感染。然而,在感染蜱的受体绵羊中未检测到B.Ovis。这些结果表明,从念珠菌感染中恢复的绵羊在随后的季节中不能成为念珠菌幼虫的感染源。
    Babesia ovis, transmitted by Rhipicephalus bursa ticks, is the causative agent of ovine babesiosis, a disease characterized by fever, anemia, hemoglobinuria, and high mortality in sheep. This study investigates whether sheep that survived babesiosis without treatment can serve as a source of infection for B. ovis-free host-seeking R. bursa larvae in a later season. Three donor sheep were experimentally infected with B. ovis, and after six months, persistence of B. ovis was assessed through blood and tick transmission experiments. Blood from donor sheep was intravenously injected into three recipient sheep, while donor sheep were also infested with B. ovis-free R. bursa larvae. Engorged nymphs molted to adults, and new recipient sheep were infested with these ticks. All recipient sheep were monitored for B. ovis for 100 days using microscopic, serological, and molecular approaches. The presence of B. ovis was confirmed in the recipient sheep that received blood, leading to clinical infection in two. However, no B. ovis was detected in recipient sheep infested with ticks. These results suggest that sheep recovering from B. ovis infection do not serve as a source of infection for R. bursa larvae in subsequent seasons.
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  • 文章类型: Journal Article
    当聚合酶链反应(PCR)用于使用单一或简并引物扩增复杂模板如宏基因组DNA时,模板的优先扩增(PCR偏差)导致最终扩增子池中原始模板的失真表示。这种偏差可能受到引物和模板之间错配的影响,不匹配的位置,和错配的核苷酸配对。许多研究已经通过用受控输入模板询问PCR扩增的最终产物来检查引物-模板相互作用。直接测量引物-模板相互作用,然而,是不可能的,导致优化PCR反应和简并引物池时的不确定性。在这项研究中,我们采用了一种减少PCR偏差的方法(即,解构PCR,或DePCR),还提供了有关PCR扩增的前两个循环中引物-模板相互作用的经验数据。我们使用合成DNA模板和不同的引物池系统地检查了引物和模板之间的相互作用,使用标准PCR和DePCR方案进行扩增。我们观察到,在简单的引物-模板系统中,完美匹配的引物-模板相互作用是有利的,特别是当错配接近引物的3'末端时。在更复杂的引物-模板系统中,更好地代表天然样品,错配扩增可以占主导地位,和严重简并的引物池可以改善输入模板的表示。当使用DePCR方法时,错配的引物-模板退火导致源模板的扩增,相对于标准PCR,失真显著降低。我们在这里建立了用于询问引物-模板相互作用的定量实验系统,并证明了DePCR用于扩增具有复杂引物库的复杂模板混合物的功效。
    When the polymerase chain reaction (PCR) is used to amplify complex templates such as metagenomic DNA using single or degenerate primers, preferential amplification of templates (PCR bias) leads to a distorted representation of the original templates in the final amplicon pool. This bias can be influenced by mismatches between primers and templates, the locations of mismatches, and the nucleotide pairing of mismatches. Many studies have examined primer-template interactions through interrogation of the final products of PCR amplification with controlled input templates. Direct measurement of primer-template interactions, however, has not been possible, leading to uncertainty when optimizing PCR reactions and degenerate primer pools. In this study, we employed a method developed to reduce PCR bias (i.e., Deconstructed PCR, or DePCR) that also provides empirical data regarding primer-template interactions during the first two cycles of PCR amplification. We systematically examined interactions between primers and templates using synthetic DNA templates and varying primer pools, amplified using standard PCR and DePCR protocols. We observed that in simple primer-template systems, perfect match primer-template interactions are favored, particularly when mismatches are close to the 3\' end of the primer. In more complex primer-template systems that better represent natural samples, mismatch amplifications can dominate, and heavily degenerate primer pools can improve representation of input templates. When employing the DePCR methodology, mismatched primer-template annealing led to amplification of source templates with significantly lower distortion relative to standard PCR. We establish here a quantitative experimental system for interrogating primer-template interactions and demonstrate the efficacy of DePCR for amplification of complex template mixtures with complex primer pools.
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  • 文章类型: Journal Article
    新辅助化疗(NAT)在乳腺癌(BC)治疗中起着至关重要的作用,在公元前晚期和公元前早期,不同BC分子亚型的病理完全缓解率(pCR)不同。成像监测是评估NAT功效的强制性要求。这项研究评估了接受NAT的BC患者的对比增强乳房X线照相术(CEM)的诊断性能。这项回顾性的双中心研究包括174例患者。根据激素受体(HR)/HER2-的分子亚型对乳腺病变进行分类。HER2+,和三阴性乳腺癌(TNBC)。手术后进行的组织病理学分析用作pCR的参考标准。灵敏度,特异性,PPV,和NPV进行了总体和不同亚型的测量。我们招募了174名患者,79/174(46%)HR+/HER2-,59/174(33.9%)HER2+,和35/174(20.1%)TNBC;pCR在64/174(36.8%)中发现,其中57.1%为TNBC。在总人口中,CEM敏感性和特异性分别为66.2%和75.2%,PPV为61.4%,NPV为78.8%。在HR+/HER2-中发现最高的特异性(80.9%)和NPV(91.7%),而TNBC的敏感性最高(70%)和PPV出现(73.7%)。结果表明,CEM是评估pCR的有效工具,BC亚型之间的表现不同。
    Neoadjuvant chemotherapy (NAT) plays a crucial role in breast cancer (BC) treatment, both in advanced BC and in early-stage BC, with different rates of pathological complete response (pCR) among the different BC molecular subtypes. Imaging monitoring is mandatory to evaluate the NAT efficacy. This study evaluates the diagnostic performance of Contrast-Enhanced Mammography (CEM) in BC patients undergoing NAT. This retrospective two-center study included 174 patients. The breast lesions were classified based on the molecular subtypes in hormone receptor (HR+)/HER2-, HER2+, and triple-negative breast cancer (TNBC). The histopathological analysis performed following surgery was used as a reference standard for the pCR. Sensitivity, specificity, PPV, and NPV were measured overall and for the different subtypes. We enrolled 174 patients, 79/174 (46%) HR+/HER2-, 59/174 (33.9%) HER2+, and 35/174 (20.1%) TNBC; the pCR was found in 64/174 (36.8%), of which 57.1% were TNBCs. In the total population, the CEM sensitivity and specificity were 66.2% and 75.2%, with a PPV of 61.4% and an NPV of 78.8%. The highest specificity (80.9%) and NPV (91.7%) were found in HR+/HER2-, while the highest sensitivity (70%) and PPV appeared (73.7%) in TNBC. The results indicate that CEM is a valid tool to assess the pCR, with different performances among the subtypes of BC.
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