open science

开放科学
  • 文章类型: Journal Article
    本文研究了在破坏性技术上应用开放科学(OS)实践的伦理意义,如生成AI。颠覆性技术,以它们的可扩展性和范式转换性质为特征,有可能产生重大的全球影响,并有双重使用的风险。操作系统通过使知识民主化来促进社会利益的道德义务与与破坏性技术的公开传播相关的风险之间存在紧张关系。VanRennselaerPotter的“第三生物伦理学”是治理这些紧张局势的伦理框架的基础。通过理论分析和具体实例,本文探讨了操作系统如何为更好的未来做出贡献或构成威胁。最后,我们为操作系统和颠覆性技术之间的交叉提供了一个道德框架,试图超越简单的“尽可能开放”的原则,将开放视为追求其他伦理价值的工具性价值,而不是具有表面道德意义的原则。
    This paper investigates the ethical implications of applying open science (OS) practices on disruptive technologies, such as generative AIs. Disruptive technologies, characterized by their scalability and paradigm-shifting nature, have the potential to generate significant global impact, and carry a risk of dual use. The tension arises between the moral duty of OS to promote societal benefit by democratizing knowledge and the risks associated with open dissemination of disruptive technologies. Van Rennselaer Potter\'s \'third bioethics\' serves as the founding horizon for an ethical framework to govern these tensions. Through theoretical analysis and concrete examples, this paper explores how OS can contribute to a better future or pose threats. Finally, we provide an ethical framework for the intersection between OS and disruptive technologies that tries to go beyond the simple \'as open as possible\' tenet, considering openness as an instrumental value for the pursuit of other ethical values rather than as a principle with prima facie moral significance.
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  • 文章类型: Journal Article
    化学是一门可重复的科学,其支柱-合成和分析-实际上包括大量高度可重复的实验方法来合成和分析物质。化学的历史发展,此外,表明方法的可重复性一直是新颖性和创造性创新的伴侣。二十多年来,“出版或灭亡”原则一直主导着全球学术界,然而,本质上也有助于化学领域不可重复研究结果的发表。因此,对化学研究的可重复性进行研究似乎是及时的,尤其是现在化学家们正在缓慢但不可避免地采用开放科学及其工具,如预印本,开放访问,和数据共享。最后,我们提出了三个简单的指南,以增强化学研究结果的发表。
    Chemistry is a reproducible science whose pillars - synthesis and analysis - actually comprise a huge collection of highly reproducible experimental methods to synthesize and analyze substances. The historical development of chemistry, furthermore, shows that reproducibility of methods has been the companion of novelty and creative innovation. The \"publish or perish\" principle dominating global academia since over two decades, however, intrinsically contributes to the publication of non-reproducible research outcomes also in chemistry. A study on reproducibility of chemistry research seems therefore timely, especially now that chemists are slowly but inevitably adopting open science and its tools such as the preprint, open access, and data sharing. We conclude presenting three simple guidelines for enhanced publication of research findings in chemistry.
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  • 文章类型: Journal Article
    开放科学(OS)的目标,在某种程度上,推动学术研究产生更大的社会影响。政府,资助者和机构政策指出,它应该进一步使研究民主化,提高学习和认识,基于证据的决策,研究与社会问题的相关性,和公众对研究的信任。然而,衡量操作系统的社会影响已被证明具有挑战性,并缺乏综合证据。本研究通过系统地界定由操作系统及其各个方面驱动的社会影响的现有证据,填补了这一空白。包括公民科学(CS),开放式访问(OA),开路/FAIR数据(OFD);开放代码/软件和其他。使用PRISMA扩展在WebofScience中进行的范围审查和搜索,Scopus和相关的灰色文献,我们确定了196项包含社会影响证据的研究.大多数人关注CS,一些人专注于OA,只有少数涉及其他方面。发现的关键影响领域是教育和意识,气候与环境,和社会参与。我们没有发现文献记录OFD的社会影响的证据和有限的社会影响在政策方面的证据,健康,对学术研究的信任。我们的研究结果表明,迫切需要更多的证据,并提出了实际和政策含义。
    Open Science (OS) aims, in part, to drive greater societal impact of academic research. Government, funder and institutional policies state that it should further democratize research and increase learning and awareness, evidence-based policy-making, the relevance of research to society\'s problems, and public trust in research. Yet, measuring the societal impact of OS has proven challenging and synthesized evidence of it is lacking. This study fills this gap by systematically scoping the existing evidence of societal impact driven by OS and its various aspects, including Citizen Science (CS), Open Access (OA), Open/FAIR Data (OFD), Open Code/Software and others. Using the PRISMA Extension for Scoping Reviews and searches conducted in Web of Science, Scopus and relevant grey literature, we identified 196 studies that contain evidence of societal impact. The majority concern CS, with some focused on OA, and only a few addressing other aspects. Key areas of impact found are education and awareness, climate and environment, and social engagement. We found no literature documenting evidence of the societal impact of OFD and limited evidence of societal impact in terms of policy, health, and trust in academic research. Our findings demonstrate a critical need for additional evidence and suggest practical and policy implications.
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  • 文章类型: Journal Article
    多元素设计是在应用行为分析中评估功能分析结果的典型设计策略。保护数据收集的可信度,绘图,从功能分析的视觉分析过程增加了为个人做出最佳干预决策的可能性。时间序列图和可视化分析是用于解释功能分析数据的最普遍的方法。当前项目包括两个主要目标。首先,我们测试了x轴与y轴比率的图形构造操纵(即,每个x轴与y轴之比的数据点[DPPXYR])影响了视觉分析人员在显示功能分析的32个多元素设计图上对功能的检测。第二,我们调查了董事会认证行为分析师(BCBAs;N=59)视觉分析与修改后的视觉检查标准之间的一致性(Roane等人。,应用行为分析杂志,46,130-146,2013)。我们发现包含随机斜坡的交叉GLMM,随机截获,并且不包括最佳执行的交互效应(AIC=1406.1,BIC=1478.2)。第二,BCBAs决策和MVI之间的一致性在数据集之间似乎很低。我们还利用开放科学的当前最佳实践来提高原始数据和分析透明度。
    Multielement designs are the quintessential design tactic to evaluate outcomes of a functional analysis in applied behavior analysis. Protecting the credibility of the data collection, graphing, and visual analysis processes from a functional analysis increases the likelihood that optimal intervention decisions are made for individuals. Time-series graphs and visual analysis are the most prevalent method used to interpret functional analysis data. The current project included two principal aims. First, we tested whether the graphical construction manipulation of the x-to-y axes ratio (i.e., data points per x- axis to y-axis ratio [DPPXYR]) influenced visual analyst\'s detection of a function on 32 multielement design graphs displaying functional analyses. Second, we investigated the alignment between board certified behavior analysts (BCBAs; N = 59) visual analysis with the modified visual inspection criteria (Roane et al., Journal of Applied Behavior Analysis, 46, 130-146, 2013). We found that the crossed GLMM that included random slopes, random intercepts, and did not include an interaction effect (AIC = 1406.1, BIC = 1478.2) performed optimally. Second, alignment between BCBAs decisions and the MVI appeared to be low across data sets. We also leveraged current best practices in Open Science for raw data and analysis transparency.
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  • 文章类型: Journal Article
    对科学数据的访问可以实现独立的重用和验证;然而,大多数数据不可用,并且随着时间的推移变得越来越不可恢复。这项研究旨在从2008-2013年至2015-2018年发表的160篇引用最多的社会科学文章中检索和保存重要数据集。我们询问作者是否会在公共存储库中共享数据-DataArk-或提供无法共享数据的原因。在160篇文章中,117的数据(73%,95%CI[67%-80%])不可用,数据为7(4%,95%CI[0%-12%])可用,但有限制。36的数据(22%,95%CI[16%-30%])的文章以无限制的形式提供:其中29个数据集已经可用,数据方舟中提供了7个数据集。大多数作者没有回应我们的数据请求,少数人分享不分享的原因。例如法律或道德约束。这些发现凸显了一个尚未解决的需要,即保留重要的科学数据集并增加其对科学界的可及性。
    Access to scientific data can enable independent reuse and verification; however, most data are not available and become increasingly irrecoverable over time. This study aimed to retrieve and preserve important datasets from 160 of the most highly-cited social science articles published between 2008-2013 and 2015-2018. We asked authors if they would share data in a public repository-the Data Ark-or provide reasons if data could not be shared. Of the 160 articles, data for 117 (73%, 95% CI [67%-80%]) were not available and data for 7 (4%, 95% CI [0%-12%]) were available with restrictions. Data for 36 (22%, 95% CI [16%-30%]) articles were available in unrestricted form: 29 of these datasets were already available and 7 datasets were made available in the Data Ark. Most authors did not respond to our data requests and a minority shared reasons for not sharing, such as legal or ethical constraints. These findings highlight an unresolved need to preserve important scientific datasets and increase their accessibility to the scientific community.
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  • 文章类型: Journal Article
    对国际开放科学运动的目的和目标的广泛理解最近通过了2021年教科文组织关于开放科学的建议,扩大开放科学的重点,包括科学知识,基础设施,知识体系和社会行为者的开放参与。作为回应,最近关于科学政策实践的讨论正在转向通过国家政策实施开放科学。虽然支持开放科学某些方面的政策工具得到了充分研究,对开放科学新兴的“社会”方面的指导已经滞后,促使教科文组织制定指导意见。在本文中,教科文组织“开放科学工具包”指导文件的几位作者综合了其建议背后的学术基础。这项工作借鉴了来自学术界的有针对性的搜索,政策,以及开放科学和社区参与领域的灰色文学,特别关注公民科学,得出如何克服社会参与方法的障碍的指导。这些结果为社会参与者的开放参与提供了一个有利的环境,确定关键考虑因素,并反思进步的机遇和挑战,并评估社会行为者对区域和国家(开放)科学政策的合理开放参与。
    A broad understanding of the aims and objectives of the international open science movement was recently adopted with the 2021 UNESCO Recommendation on Open Science, expanding the focus of open science to include scientific knowledge, infrastructures, knowledge systems and the open engagement of societal actors. In response, recent discussions on science policy practice are shifting to the implementation of open science via national policies. While policy instruments to support some aspects of open science are well-studied, guidance on the emerging \'social\' aspects of open science has lagged, prompting UNESCO to generate guidance. In this paper, several authors of the UNESCO Open Science Toolkit guidance document on \'Engaging societal actors in Open Science\' synthesize the scholarly underpinnings behind its recommendations. This work draws upon a targeted search from academic, policy, and grey literature in the fields of open science and community engagement, with a special focus on citizen science, to derive guidance on how to overcome barriers to the uptake of societal engagement approaches. The results present building blocks of what an enabling environment for the open engagement of societal actors could look like, identifying key considerations and reflecting on opportunities and challenges for progressing and evaluating sound open engagement of societal actors into regional & national (open) science policies.
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  • 文章类型: Journal Article
    科学方法以透明度为前提,但科学界采用透明研究实践的步伐却很缓慢。心理学中的复制危机表明,采用统计推断的已发表发现受到未被发现的错误的威胁,数据操纵和数据篡改。为了缓解这些问题并提高研究可信度,开放数据和预注册实践在自然科学和社会科学中获得了吸引力。然而,他们在不同学科中的采用程度是未知的。我们引入了计算程序,以使用大规模文本分析和机器学习分类器来识别研究领域的透明度。以政治学和国际关系为例,我们审查了2010年至2021年间160种顶级政治学和国际关系期刊上的93931篇文章。我们发现,所有统计推断论文中约有21%具有开放数据,所有实验中有5%是预先注册的。尽管有这种不足,该领域领先期刊的例子表明,变革是可行的,可以很快实现。
    The scientific method is predicated on transparency-yet the pace at which transparent research practices are being adopted by the scientific community is slow. The replication crisis in psychology showed that published findings employing statistical inference are threatened by undetected errors, data manipulation and data falsification. To mitigate these problems and bolster research credibility, open data and preregistration practices have gained traction in the natural and social sciences. However, the extent of their adoption in different disciplines is unknown. We introduce computational procedures to identify the transparency of a research field using large-scale text analysis and machine learning classifiers. Using political science and international relations as an illustrative case, we examine 93 931 articles across the top 160 political science and international relations journals between 2010 and 2021. We find that approximately 21% of all statistical inference papers have open data and 5% of all experiments are preregistered. Despite this shortfall, the example of leading journals in the field shows that change is feasible and can be effected quickly.
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  • 文章类型: Journal Article
    对数据分析中高效计算的需求增加,鼓励生物医学科学研究人员使用工作流系统。工作流系统,或者所谓的工作流语言,用于描述和执行一组数据分析步骤。工作流系统提高了研究人员的生产力,特别是在使用高通量DNA测序应用的领域,其中需要可扩展计算。由于系统提高了数据分析工作流程的可移植性,研究社区能够共享工作流程,以降低构建普通分析程序的成本。然而,在一个研究领域拥有多个工作流系统导致了不同工作流系统社区的努力分布。由于每个工作流系统都有其独特的特点,为了使用公开共享的工作流,学习每一个系统是不可行的。因此,我们开发了札幌,一种应用程序,用于根据各种工作流系统的差异提供统一的工作流执行层。札幌有两个组件:接收工作流运行请求的应用程序编程接口(API)和基于浏览器的API客户端。该API遵循全球基因组学和健康联盟提出的工作流执行服务API标准。当前实现支持以四种语言执行工作流:通用工作流语言、工作流描述语言,蛇饼,和Nextflow。凭借其可扩展和可扩展的设计,札幌可以支持研究社区利用宝贵的资源进行数据分析。
    The increased demand for efficient computation in data analysis encourages researchers in biomedical science to use workflow systems. Workflow systems, or so-called workflow languages, are used for the description and execution of a set of data analysis steps. Workflow systems increase the productivity of researchers, specifically in fields that use high-throughput DNA sequencing applications, where scalable computation is required. As systems have improved the portability of data analysis workflows, research communities are able to share workflows to reduce the cost of building ordinary analysis procedures. However, having multiple workflow systems in a research field has resulted in the distribution of efforts across different workflow system communities. As each workflow system has its unique characteristics, it is not feasible to learn every single system in order to use publicly shared workflows. Thus, we developed Sapporo, an application to provide a unified layer of workflow execution upon the differences of various workflow systems. Sapporo has two components: an application programming interface (API) that receives the request of a workflow run and a browser-based client for the API. The API follows the Workflow Execution Service API standard proposed by the Global Alliance for Genomics and Health. The current implementation supports the execution of workflows in four languages: Common Workflow Language, Workflow Description Language, Snakemake, and Nextflow. With its extensible and scalable design, Sapporo can support the research community in utilizing valuable resources for data analysis.
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  • 文章类型: Journal Article
    许多分析师的研究探索了一个经验声明如何能够承受多个数据集的合理替代分析,独立分析团队。这些研究的结论通常依赖于每个分析团队提供的单一结果度量(例如效应大小)。尽管提供了有关数据集中合理影响范围的信息,每个团队的单一效果大小并不能提供完整的,对分析选择如何与结果相关的细微差别的理解。我们使用Delphi共识技术和37位专家的输入进行了18项主观证据评估调查(SEES),以评估每个分析团队如何看待研究设计的方法学适用性以及假设的证据强度。我们通过先前的许多分析师研究的试点数据来说明SEES在提供更丰富的证据评估方面的有用性。
    Many-analysts studies explore how well an empirical claim withstands plausible alternative analyses of the same dataset by multiple, independent analysis teams. Conclusions from these studies typically rely on a single outcome metric (e.g. effect size) provided by each analysis team. Although informative about the range of plausible effects in a dataset, a single effect size from each team does not provide a complete, nuanced understanding of how analysis choices are related to the outcome. We used the Delphi consensus technique with input from 37 experts to develop an 18-item subjective evidence evaluation survey (SEES) to evaluate how each analysis team views the methodological appropriateness of the research design and the strength of evidence for the hypothesis. We illustrate the usefulness of the SEES in providing richer evidence assessment with pilot data from a previous many-analysts study.
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  • 文章类型: Journal Article
    在过去的十年里,开放科学(OS)已成为一项全球科学政策和研究计划,对研究的大多数方面都有影响,包括规划,资金,出版,评估,数据共享和访问。随着操作系统越来越突出,它也面临着大量的批评。无论是对与开放获取发布相关的访问平等的担忧,还是最近对OS的指控使那些出于私人利益行事而不回馈OS的人受益,有,的确,许多潜在的以及实际的危害,可以链接到操作系统的做法。这些批评往往围绕着道德挑战和公平问题,这引发了一个问题,即操作系统是否需要一个全面的道德治理框架。本评注认为,由于操作系统规范基础的异质性和科学实践中固有的多样性,需要一种多元化和深思熟虑的治理方法。
    Over the past decade, open science (OS) has emerged as a global science policy and research initiative with implications for most aspects of research, including planning, funding, publishing, evaluation, data sharing and access. As OS has gained increasing prominence, it has also faced substantial criticism. Whether it is the worries about the equality of access associated with open-access publishing or the more recent allegations of OS benefitting those who act in the private interest without giving back to OS, there are, indeed, many potential as well as actual harms that can be linked to the practice of OS. These criticisms often revolve around ethical challenges and fairness concerns, prompting the question of whether a comprehensive ethical governance framework is needed for OS. This commentary contends that owing to the heterogeneous nature of the normative foundations of OS and the inherent diversity within scientific practices, a pluralistic and deliberative approach to governance is needed.
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