modelling

建模
  • 文章类型: Journal Article
    许多研究已经开发或验证了预测模型,以估计食管癌(EC)患者术后肺炎(POP)的可能性。这些模型的质量及其对临床实践和未来研究的适用性的评估仍然未知。本研究系统地评估了食管癌手术患者发生POP的风险预测模型的偏倚风险和适用性。
    PubMed,Embase,WebofScience,科克伦图书馆,护理和相关健康文献累积指数(CINAHL),中国国家知识基础设施(CNKI),中国科技期刊数据库(VIP),从开始到2024年3月12日检索万方数据库和中国生物医学文献数据库。两名研究者独立筛选文献并提取数据。采用预测模型偏差风险评估工具(PROBAST)检查表评估偏差风险和适用性。
    共14项研究,涉及23个模型。这些研究主要发表在2014年至2023年之间。所有研究的适用性都很好。然而,所有研究都表现出偏见的高风险,主要归因于不适当的数据源,样本量不足,对变量和缺失数据的不合理处理,缺乏模型验证。食管癌手术患者POP发生率为14.60%~39.26%。最常用的预测因素是吸烟,年龄,慢性阻塞性肺疾病(COPD),糖尿病,开胸手术的方法。模型间判别范围为0.627~0.850,灵敏度为60.7%~84.0%,特异性为59.1%至83.9%。
    在所有纳入的研究中,据报道,食管癌手术患者POP风险预测模型具有良好的区分度,表明模型性能稳定。然而,根据PROBAST检查表,所有研究均存在较高的偏倚风险.未来的研究应使用预测模型评估工具来改进研究设计,并开发具有更大样本和多中心外部验证的新模型。
    https://www.crd.约克。AC.英国/普劳里,标识符CRD42024527085。
    UNASSIGNED: Numerous studies have developed or validated prediction models to estimate the likelihood of postoperative pneumonia (POP) in esophageal cancer (EC) patients. The quality of these models and the evaluation of their applicability to clinical practice and future research remains unknown. This study systematically evaluated the risk of bias and applicability of risk prediction models for developing POP in patients undergoing esophageal cancer surgery.
    UNASSIGNED: PubMed, Embase, Web of Science, Cochrane Library, Cumulative Index to Nursing and Allied Health Literature (CINAHL), China National Knowledge Infrastructure (CNKI), China Science and Technology Journal Database (VIP), WanFang Database and Chinese Biomedical Literature Database were searched from inception to March 12, 2024. Two investigators independently screened the literature and extracted data. The Prediction Model Risk of Bias Assessment Tool (PROBAST) checklist was employed to evaluate both the risk of bias and applicability.
    UNASSIGNED: A total of 14 studies involving 23 models were included. These studies were mainly published between 2014 and 2023. The applicability of all studies was good. However, all studies exhibited a high risk of bias, primarily attributed to inappropriate data sources, insufficient sample size, irrational treatment of variables and missing data, and lack of model validation. The incidence of POP in patients undergoing esophageal cancer surgery ranged from 14.60% to 39.26%. The most frequently used predictors were smoking, age, chronic obstructive pulmonary disease(COPD), diabetes mellitus, and methods of thoracotomy. Inter-model discrimination ranged from 0.627 to 0.850, sensitivity ranged between 60.7% and 84.0%, and specificity ranged from 59.1% to 83.9%.
    UNASSIGNED: In all included studies, good discrimination was reported for risk prediction models for POP in patients undergoing esophageal cancer surgery, indicating stable model performance. However, according to the PROBAST checklist, all studies had a high risk of bias. Future studies should use the predictive model assessment tool to improve study design and develop new models with larger samples and multicenter external validation.
    UNASSIGNED: https://www.crd.york.ac.uk/prospero, identifier CRD42024527085.
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  • 文章类型: Journal Article
    背景:睡病(冈比亚人非洲锥虫病,gHAT)是一种媒介传播疾病,旨在到2030年在全球消除传播(EoT)。有,然而,有可能阻碍这一目标的实现和衡量的未知因素。这些包括无症状的gHAT感染(包括自愈或仅有皮肤感染的可能性)以及动物中的gHAT感染是否会导致人类的传播周期。
    方法:使用建模,我们探讨了神秘(未被发现)的传播如何影响对EoT目标的进展和实现的监测。我们开发了gHAT模型,包括无症状或动物传播,并将这些与没有这些传输路线的基线gHAT模型进行比较,探讨隐匿性感染对EoT目标的潜在作用。使用可用的2000-2020年历史人类病例数据(从世界卫生组织的HAT地图集获得),将每个模型独立校准到刚果民主共和国(DRC)的五个不同卫生区。我们对渐近模型应用了一种新颖的贝叶斯顺序更新方法,使我们能够组合有关每个健康区此类传播的统计信息。
    结果:我们的结果表明,当与过去的案例数据匹配时,我们估计模型变体之间的新人类感染数量相似,尽管在隐匿性感染的模型中,人类感染略高。我们模拟了屏幕确认和治疗干预的延续,发现动物和无症状传播模型的正向预测产生的EoT概率低于基线模型;然而,隐匿性感染并不能阻止EoT最终在这种方法下实现。
    结论:这项研究是第一个模拟(尚未可用的)筛查和治疗策略的研究,发现与其他模型相比,去除寄生虫学确认步骤被预测对无症状模型下的传播减少具有更明显的益处。我们的模拟表明,矢量控制可能会极大地影响所有模型中的所有传输路线,尽管这种资源密集型干预应谨慎优先。
    BACKGROUND: Sleeping sickness (gambiense human African trypanosomiasis, gHAT) is a vector-borne disease targeted for global elimination of transmission (EoT) by 2030. There are, however, unknowns that have the potential to hinder the achievement and measurement of this goal. These include asymptomatic gHAT infections (inclusive of the potential to self-cure or harbour skin-only infections) and whether gHAT infection in animals can contribute to the transmission cycle in humans.
    METHODS: Using modelling, we explore how cryptic (undetected) transmission impacts the monitoring of progress towards and the achievement of the EoT goal. We have developed gHAT models that include either asymptomatic or animal transmission, and compare these to a baseline gHAT model without either of these transmission routes, to explore the potential role of cryptic infections on the EoT goal. Each model was independently calibrated to five different health zones in the Democratic Republic of the Congo (DRC) using available historical human case data for 2000-2020 (obtained from the World Health Organization\'s HAT Atlas). We applied a novel Bayesian sequential updating approach for the asymptomatic model to enable us to combine statistical information about this type of transmission from each health zone.
    RESULTS: Our results suggest that, when matched to past case data, we estimated similar numbers of new human infections between model variants, although human infections were slightly higher in the models with cryptic infections. We simulated the continuation of screen-confirm-and-treat interventions, and found that forward projections from the animal and asymptomatic transmission models produced lower probabilities of EoT than the baseline model; however, cryptic infections did not prevent EoT from being achieved eventually under this approach.
    CONCLUSIONS: This study is the first to simulate an (as-yet-to-be available) screen-and-treat strategy and found that removing a parasitological confirmation step was predicted to have a more noticeable benefit to transmission reduction under the asymptomatic model compared with the others. Our simulations suggest vector control could greatly impact all transmission routes in all models, although this resource-intensive intervention should be carefully prioritised.
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  • 文章类型: Journal Article
    起飞是动力飞行的重要组成部分,可能会限制鸟类的大小,然而,众所周知,已经灭绝的翼龙已经达到了更大的尺寸。三种不同的假设起飞运动(双足爆射,双足反动发射,和四足发射)已被提议作为翼龙如何空中飞行并规避了这一拟议的形态限制的解释。我们已经构建了一个5m翼展鸟巢翼龙的计算肌肉骨骼模型,重建三十四个关键肌肉,以估计在三个假设的起飞运动中的肌肉力矩。在现存的飞行脊椎动物之后,对双足和四足起飞运动的运动约束范围的假设运动学序列进行了建模。在我们的模拟中,我们没有发现用于双足起飞运动的后肢力矩臂或用于四足起飞运动的前肢力矩臂明显较高。尽管如此,在我们所有的模型中,我们发现在四足动物起飞中使用的肌肉在整个起飞序列和起飞姿势中具有最大的总发射适用力矩臂。这表明在进一步检查肌肉力量之前,翼龙的四足起飞比假设的两足运动具有更高的杠杆作用。
    Take-off is a vital part of powered flight which likely constrains the size of birds, yet extinct pterosaurs are known to have reached far larger sizes. Three different hypothesised take-off motions (bipedal burst launching, bipedal countermotion launching, and quadrupedal launching) have been proposed as explanations for how pterosaurs became airborne and circumvented this proposed morphological limit. We have constructed a computational musculoskeletal model of a 5 m wingspan ornithocheiraean pterosaur, reconstructing thirty-four key muscles to estimate the muscle moment arms throughout the three hypothesised take-off motions. Range of motion constrained hypothetical kinematic sequences for bipedal and quadrupedal take-off motions were modelled after extant flying vertebrates. Across our simulations we did not find higher hindlimb moment arms for bipedal take-off motions or noticeably higher forelimb moment arms in the forelimb for quadrupedal take-off motions. Despite this, in all our models we found the muscles utilised in the quadrupedal take-off have the largest total launch applicable moment arms throughout the entire take-off sequences and for the take-off pose. This indicates the potential availability of higher leverage for a quadrupedal take-off than hypothesised bipedal motions in pterosaurs pending further examination of muscle forces.
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  • 文章类型: Journal Article
    数学建模在理解和管理城市供水系统(UWS)中起着至关重要的作用。机械模型通常作为其设计和操作的基础。尽管被广泛收养,机械模型受到动态过程的复杂性和高计算要求的挑战。数据驱动的模型带来了捕捉系统复杂性并降低计算成本的机会,通过利用传感器技术的最新进展提供的丰富数据。然而,可解释性和数据可用性阻碍了它们的广泛采用。本文主张在UWS上下文中应用数据驱动模型的范式转变。将现有的机械知识集成到数据驱动的建模中提供了一种独特的解决方案,可以降低数据需求并增强模型的可解释性。知识知情方法在模型复杂性与数据集大小之间取得平衡,在UWS中实现更高效和可解释的建模。此外,机械和数据驱动模型的集成提供了UWS动力学的更准确表示,解决挥之不去的不确定性,提高建模能力。本文提出了开发和实现知识信息数据驱动建模的观点和概念框架,强调他们在数字时代改善UWS管理的潜力。
    Mathematical modeling plays a crucial role in understanding and managing urban water systems (UWS), with mechanistic models often serving as the foundation for their design and operations. Despite the wide adoptions, mechanistic models are challenged by the complexity of dynamic processes and high computational demands. Data-driven models bring opportunities to capture system complexities and reduce computational cost, by leveraging the abundant data made available by recent advance in sensor technologies. However, the interpretability and data availability hinder their wider adoption. This paper advocates for a paradigm shift in the application of data-driven models within the context of UWS. Integrating existing mechanistic knowledge into data-driven modeling offers a unique solution that reduces data requirements and enhances model interpretability. The knowledge-informed approach balances model complexity with dataset size, enabling more efficient and interpretable modeling in UWS. Furthermore, the integration of mechanistic and data-driven models offers a more accurate representation of UWS dynamics, addressing lingering uncertainties and advancing modelling capabilities. This paper presents perspectives and conceptual framework on developing and implementing knowledge-informed data-driven modeling, highlighting their potential to improve UWS management in the digital era.
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  • 文章类型: Journal Article
    应受感染血液调查的要求召开了统计专家组会议,以提供包括乙型肝炎病毒在内的血液传播感染的感染人数和死亡人数的估计,人类免疫缺陷病毒,丙型肝炎病毒(HCV)和变异型克雅氏病,这是大不列颠及北爱尔兰联合王国(UK)使用的受污染的血液和血液制品的直接结果。在英国所有国家都没有HCV感染和相关死亡的数据库的情况下,需要一个统计模型来估计1970年1月至1991年8月因输血获得的HCV感染和随后死亡的数量.我们详细介绍了该统计模型以及将其应用于英国四个国家中的每个国家的结果。我们估计,在1970年1月至1991年8月之间,由于输血被污染,整个英国有26800人(95%的不确定区间21300-38800)被HCV慢性感染。截至2019年底,因这种慢性感染而导致的死亡人数估计为1820人(95%不确定区间650-3320)。
    The Statistics Expert Group was convened at the request of the Infected Blood Inquiry to provide estimates of the number of infections and deaths from blood-borne infections including hepatitis B virus, human immunodeficiency virus, hepatitis C virus (HCV) and variant Creutzfeldt Jakob disease, as a direct result of contaminated blood and blood products administered in the United Kingdom of Great Britain and Northern Ireland (UK). In the absence of databases of HCV infections and related deaths for all nations of the UK, a statistical model was required to estimate the number of infections and subsequent deaths from HCV acquired from blood transfusions from January 1970 to August 1991. We present this statistical model in detail alongside the results of its application to each of the four nations in the UK. We estimated that 26 800 people (95% uncertainty interval 21 300-38 800) throughout the UK were chronically infected with HCV because of contaminated blood transfusions between January 1970 and August 1991. The number of deaths up to the end of 2019 that occurred as a result of this chronic infection is estimated to be 1820 (95% uncertainty interval 650-3320).
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  • 文章类型: Journal Article
    各国建议对青春期少女常规接种一到两剂人乳头瘤病毒(HPV)疫苗,以消除宫颈癌这一公共卫生问题。由于大多数现有疫苗剂量被现有HPV疫苗接种计划的国家(主要是高收入国家)吸收,有限的供应一直留给新的国家引进,直到2022年;其中许多,低收入和中等收入国家死亡率较高。免疫战略专家咨询小组考虑了几种疫苗接种战略,以允许更多国家在供应有限的情况下引入疫苗接种。
    我们研究了从2020年到2030年向100个引进前国家分配有限疫苗剂量的九种策略的影响。使用两种算法来优化癌症死亡的总数,通过有限的剂量(背包和国家特定死亡率的递减顺序)可以避免全球范围内的癌症死亡总数。并使用了未优化的算法(人类发展指数的降序)。
    定期给14岁的女孩接种一剂或两剂疫苗,并在供应不再受限的情况下转向常规的9岁计划,可以防止大多数宫颈癌死亡,不管分配算法。未优化的分配避免了更少的死亡,因为它首先分配给高收入国家,通常具有较低的子宫颈癌死亡率。
    为了在供应有限的情况下优化通过疫苗接种避免的死亡,重要的是优先考虑高负担国家,并首先为年龄较大的女孩接种疫苗。
    谁,比尔和梅林达·盖茨基金会。
    UNASSIGNED: Countries are recommended to immunise adolescent girls routinely with one or two doses of human papillomavirus (HPV) vaccines to eliminate cervical cancer as a public health problem. With most existing vaccine doses absorbed by countries (mostly high-income) with existing HPV vaccination programmes, limited supply has been left for new country introductions until 2022; many of those, low- and middle-income countries with higher mortality. Several vaccination strategies were considered by the Strategic Advisory Group of Experts on Immunization to allow more countries to introduce vaccination despite constrained supplies.
    UNASSIGNED: We examined the impact of nine strategies for allocating limited vaccine doses to 100 pre-introduction countries from 2020 to 2030. Two algorithms were used to optimise the total number of cancer deaths that can be averted worldwide by a limited number of doses (knapsack and decreasing order of country-specific mortality rates), and an unoptimised algorithm (decreasing order of Human Development Index) were used.
    UNASSIGNED: Routinely vaccinating 14-year-old girls with either one or two doses and switching to a routine 9-year-old programme when supply is no longer constrained could prevent the most cervical cancer deaths, regardless of allocation algorithm. The unoptimised allocation averts fewer deaths because it allocates first to higher-income countries, usually with lower cervical cancer mortality.
    UNASSIGNED: To optimise the deaths averted through vaccination when supply is limited, it is important to prioritise high-burden countries and vaccinating older girls first.
    UNASSIGNED: WHO, Bill & Melinda Gates Foundation.
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  • 文章类型: Journal Article
    在COVID-19大流行期间,数学建模在提供知情建议方面发挥了重要作用。在英国,一项跨政府和学术界的合作从一系列流行病学模型中对未来4-6周可能的流行病轨迹进行了中期预测(MTPs).在这篇文章中,我们概述了这种协作建模方法,并根据2021年11月至2022年12月期间各种Omicron亚变体在英格兰传播的数据评估了组合模型和单个模型预测的准确性.使用一些统计方法,我们量化了组合和单个MTP的模型预测的预测性能,通过评估点和概率准确性。我们的结果表明,合并的MTP,从一组异质流行病学模型中产生,在流行病增长或下降期间,比单个模型更接近数据,90%的置信区间在流行病高峰附近最宽。我们还表明,组合的MTP增加了鲁棒性,并减少了与单个模型投影相关的偏差。从我们在COVID-19流行期间的合奏建模经验中学习,我们的研究结果强调了发展跨机构多模式传染病中心对于未来疫情控制的重要性.
    Mathematical modelling has played an important role in offering informed advice during the COVID-19 pandemic. In England, a cross government and academia collaboration generated medium-term projections (MTPs) of possible epidemic trajectories over the future 4-6 weeks from a collection of epidemiological models. In this article, we outline this collaborative modelling approach and evaluate the accuracy of the combined and individual model projections against the data over the period November 2021-December 2022 when various Omicron subvariants were spreading across England. Using a number of statistical methods, we quantify the predictive performance of the model projections for both the combined and individual MTPs, by evaluating the point and probabilistic accuracy. Our results illustrate that the combined MTPs, produced from an ensemble of heterogeneous epidemiological models, were a closer fit to the data than the individual models during the periods of epidemic growth or decline, with the 90% confidence intervals widest around the epidemic peaks. We also show that the combined MTPs increase the robustness and reduce the biases associated with a single model projection. Learning from our experience of ensemble modelling during the COVID-19 epidemic, our findings highlight the importance of developing cross-institutional multi-model infectious disease hubs for future outbreak control.
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  • 文章类型: Journal Article
    慢性心力衰竭是住院的最常见原因之一。目前的风险分层是基于射血分数,而许多心律失常事件发生在射血分数相对保留的患者中。我们的目的是研究心律失常异常之间的机制联系,心力衰竭的收缩力和舒张功能障碍降低,使用机电建模和人类衰竭心肌细胞的模拟。我们建造了,失败的心肌细胞的人类机电模型的校准和验证群体,能够重现长期的动作电位,在人类数据中观察到的收缩力和舒张功能障碍降低,以及增加的致心律失常事件的倾向,例如早期的去极化后和搏动交替。我们的模拟数据显示,心律失常事件倾向于发生在舒张张力较低的衰竭心肌细胞中,而不是收缩力较低,由于相对保存的SERCA和钠钙交换电流。这些结果支持将舒张末期容积纳入可能有益于心力衰竭患者的风险分层。
    Chronic heart failure is one of the most common reasons for hospitalization. Current risk stratification is based on ejection fraction, whereas many arrhythmic events occur in patients with relatively preserved ejection fraction. We aim to investigate the mechanistic link between proarrhythmic abnormalities, reduced contractility and diastolic dysfunction in heart failure, using electromechanical modelling and simulations of human failing cardiomyocytes. We constructed, calibrated and validated populations of human electromechanical models of failing cardiomyocytes, that were able to reproduce the prolonged action potential, reduced contractility and diastolic dysfunction as observed in human data, as well as increased propensity to proarrhythmic incidents such as early afterdepolarization and beat-to-beat alternans. Our simulation data reveal that proarrhythmic incidents tend to occur in failing myocytes with lower diastolic tension, rather than with lower contractility, due to the relative preserved SERCA and sodium calcium exchanger current. These results support the inclusion of end-diastolic volume to be potentially beneficial in the risk stratifications of heart failure patients.
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  • 文章类型: Journal Article
    在四砷三硒化物(As4Se3)的熔融淬火玻璃态合金中,可以识别出由高能机械球磨(nanomilling)驱动的多变形转变。我们采用了XRPD分析,并辅以热物理传热和显微拉曼光谱研究。通过将该合金的XRPD图案中的扩散峰晕处理为平面间相关性的布拉格衍射贡献的叠加,在改进的微晶模型中对铣削驱动的重整化的中程结构响应进行了简单的解释,补充了与硫代砷化物As4Sen分子衍生物相关的原子间和/或分子间相关性的Ehrenfest衍射贡献,主要是双非晶型As4Se3。这些笼状分子只是在研磨下被破坏,促进形成具有增强的量热传热响应的聚合网络。中断中档订购,由于FSDP(第一个尖锐的衍射峰)的减弱,伴随着扩展范围排序的增强,由于负责SSDP的结构实体的碎裂(第二个尖锐的衍射峰),发生在变质的As4Se3玻璃合金中的中程结构水平之间的相互作用。通过显微拉曼光谱证明了纳米研磨驱动的硫代砷化物As4Sen分子的破坏,然后将其残留物掺入玻璃状网络中。由As4Se3分子的分解及其在研磨下的直接破坏引起的分子到网络多态转变的微观结构方案通过从头算的量子化学簇建模算法来识别。
    Polyamorphic transformations driven by high-energy mechanical ball milling (nanomilling) are recognized in a melt-quenched glassy alloy of tetra-arsenic triselenide (As4Se3). We employed XRPD analysis complemented by thermophysical heat-transfer and micro-Raman spectroscopy studies. A straightforward interpretation of the medium-range structural response to milling-driven reamorphization is developed within a modified microcrystalline model by treating diffuse peak-halos in the XRPD patterns of this alloy as a superposition of the Bragg-diffraction contribution from inter-planar correlations, which are supplemented by the Ehrenfest-diffraction contribution from inter-atomic and/or inter-molecular correlations related to derivatives of thioarsenide As4Sen molecules, mainly dimorphite-type As4Se3 ones. These cage molecules are merely destroyed under milling, facilitating the formation of a polymerized network with enhanced calorimetric heat-transfer responses. Disruption of intermediate-range ordering, due to weakening of the FSDP (the first sharp diffraction peak), accompanied by an enhancement of extended-range ordering, due to fragmentation of structural entities responsible for the SSDP (the second sharp diffraction peak), occurs as an interplay between medium-range structural levels in the reamorphized As4Se3 glass alloy. Nanomilling-driven destruction of thioarsenide As4Sen molecules followed by incorporation of their remnants into a glassy network is proved by micro-Raman spectroscopy. Microstructure scenarios of the molecular-to-network polyamorphic transformations caused by the decomposition of the As4Se3 molecules and their direct destruction under grinding are recognized by an ab initio quantum-chemical cluster-modeling algorithm.
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  • 文章类型: Journal Article
    保持可靠的能源供应,应对极端天气,水资源短缺以及电力和制冷需求的增加对于成功实施清洁能源转型至关重要。在几个极度干旱的国家发现的综合电力和水系统,具有冷却驱动的电力需求和几乎完全依赖海水淡化的特点,提供案例研究,说明能源系统对这些条件的鲁棒性。我们使用线性优化来在基于阿拉伯联合酋长国(UAE)面向弹性的能源系统的模型系统中最小化成本,同时逐步使能源组合脱碳。我们证明,在保守的未来技术成本假设下,高水平的可再生能源采用在经济上是有利的,甚至包括严格的弹性要求,并为在具有挑战性的气候条件下向可再生能源过渡的其他能源系统得出结论,特别是关于海水淡化的作用,需求灵活性,储能,以及确保可再生主导系统的弹性的常规设计规则的适用性。
    Maintaining reliable energy supplies with resilience to extreme weather, water shortage and rising electricity and cooling demand is crucial to successfully implementing the clean energy transition. The integrated power and water systems found in several hyper-arid countries, featuring cooling-driven electrical demand and near-total dependence on seawater desalination, offer case studies illustrating energy system robustness to these conditions. We use linear optimization to minimize costs in a model system based on the resiliency-oriented energy system of the United Arab Emirates (UAE) while progressively decarbonizing the energy mix. We demonstrate that high levels of renewable energy adoption are economically favorable under conservative future technology cost assumptions, even including strict resiliency requirements, and draw conclusions for other energy systems making the transition to renewable energy under challenging climatic conditions, especially regarding the role of water desalination, demand flexibility, energy storage, and suitability of conventional design rules for ensuring resilience in renewable-dominated systems.
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