Snow leopards (Panthera uncia) are elusive predators inhabiting high-altitude and mountainous rugged habitats. The current study was conducted in the Yanchiwan National Nature Reserve, Gansu Province, China, to assess the habitat suitability of snow leopards and identify key environmental factors inducing their distribution. Field data collected between 2019 and 2022 through scat sampling and camera trapping techniques provided insights into snow leopard habitat preferences. Spatial distribution and cluster analyses show distinct hotspots of high habitat suitability, mostly concentrated near mountainous landscapes. While altitude remains a critical determinant, with places above 3300 m showing increased habitat suitability, other factors such as soil type, human footprint, forest cover, prey availability, and human disturbance also play important roles. These variables influence ecological dynamics and are required to assess and manage snow leopard habitats. The MaxEnt model has helped us to better grasp these issues, particularly the enormous impact of human activities on habitat suitability. The current study highlights the importance of altitude in determining snow leopard habitat preferences and distribution patterns in the reserve. Furthermore, the study underscores the significance of considering elevation in conservation planning and management strategies for snow leopards, particularly in mountainous regions. By combining complete environmental data with innovative modeling tools, this study not only improves local conservation efforts but also serves as a model for similar wildlife conservation initiatives around the world. By understanding the environmental factors driving snow leopard distribution, conservation efforts can be more efficiently directed to ensure the long-term survival of this endangered species. This study provides valuable insights for evidence-based conservation efforts to safeguard the habitats of snow leopards amidst emerging anthropogenic pressure and environmental fluctuations.

The enteric virome, comprising a complex community of viruses inhabiting the gastrointestinal tract, plays a significant role in health and disease dynamics. In this study, the fecal sample of a wild snow leopard was subjected to viral metagenomic analysis using a double barcode Illumina MiSeq platform. The resulting reads were de novo assembled into contigs with SOAPdenovo2 version r240. Additional bioinformatic analysis of the assembled genome and genome annotation was done using the Geneious prime software (version 2022.0.2). Following viral metagenomic analysis and bioinformatic analysis, a total of 7 viral families and a novel specie of bocaparvovirus tentatively named Panthera uncia bocaparvovirus (PuBOV) with GenBank accession number OQ627713 were identified. The complete genome of PuBOV was predicted to contain 3 open reading frames (ORFs), contains 5433 nucleotides and has a G + C content of 47.40 %. BLASTx analysis and pairwise sequence comparison indicated the novel virus genome was a new species in the genus Bocaparvovirus based on the species demarcation criteria of the International Committee on the Taxonomy of Viruses. This study provides valuable insights into the diversity and composition of the enteric virome in wild endangered snow leopards. The identification and characterization of viruses in wildlife is crucial for developing effective strategies to manage and mitigate potential zoonotic and other viral disease threats to human and animal health.

The population of snow leopards (Unciauncia) maintained in US zoos is no longer sustainable due to poor reproductive success. Our objective was to assess reproductive traits in male snow leopards and identify factors (markers of oxidative stress in seminal fluid, surveys of husbandry practices, gonadal and adrenocortical activity, dietary intake of various nutrients, and genetics) that may affect ejaculate traits and subsequent fertility. Ejaculates (2.9 ± 0.2 mL) from 32 male snow leopards (9.8 ± 0.7 years; 38.6 ± 0.8 kg) housed at 27 institutions contained 119.2 + 26.0 x 106 spermatozoa, of which 75.1 ± 2.3% were motile and 28.6 ± 2.6% exhibited normal morphology. Overall, 34% of males produced <5 million spermatozoa and 27% of males produced spermatozoa with <20% normal morphology. Activity of superoxide dismutase (SOD) in the seminal fluid was negatively correlated (P < 0.05, r 2 = 0.90) with normal sperm morphology. Husbandry practices, mean concentrations of fecal androgen metabolites (fAM), and baseline concentrations of fecal glucocorticoid metabolites (fGM), inbreeding coefficients, and generations each male was removed from the founders in their lineages were not correlated (P > 0.05) with the total number of spermatozoa or the proportion of spermatozoa with normal morphology. Total sperm count was positively correlated (P < 0.05, R 2 = 0.86) with the weekly intake of polyunsaturated fatty acids (PUFA) and the proportion of spermatozoa with normal morphology tended (P < 0.10, R 2 = 0.31) to be positively correlated with copper intake. Altering the nutrient composition of snow leopard diets could provide managers with a possible method of improving reproductive traits in this endangered species.
The population of snow leopards (Uncia uncia) maintained in US zoos has been declining since 1993 due to poor breeding success. Our objective was to assess the reproductive traits of male snow leopards and identify factors (e.g. hormones, diet, genetics) that may be affecting the quality of semen produced and therefore subsequent fertility. Within a cohort of 32 male snow leopards maintained at 27 US zoos, we found that 34% produced less than 5 million sperm and 27% of males produced sperm where less than 20% looked normal. The quantity and quality of the recovered sperm was not correlated with husbandry practices, concentrations of hormones (androgens and glucocorticoids) in feces, or genetics. However, the number of sperm was positively correlated with polyunsaturated fatty acids in the diet. Altering the nutrient composition of snow leopard diets could provide managers with a possible method of improving reproductive traits in this endangered species.

In this study, we investigated the impact of domestic and wild prey availability on snow leopard prey preference in the Kangchenjunga Conservation Area of eastern Nepal-a region where small domestic livestock are absent and small wild ungulate prey are present. We took a comprehensive approach that combined fecal genetic sampling, macro- and microscopic analyses of snow leopard diets, and direct observation of blue sheep and livestock in the KCA. Out of the collected 88 putative snow leopard scat samples from 140 transects (290 km) in 27 (4 × 4 km2) sampling grid cells, 73 (83%) were confirmed to be from snow leopard. The genetic analysis accounted for 19 individual snow leopards (10 males and 9 females), with a mean population size estimate of 24 (95% CI: 19-29) and an average density of 3.9 snow leopards/100 km2 within 609 km2. The total available prey biomass of blue sheep and yak was estimated at 355,236 kg (505 kg yak/km2 and 78 kg blue sheep/km2). From the available prey biomass, we estimated snow leopards consumed 7% annually, which comprised wild prey (49%), domestic livestock (45%), and 6% unidentified items. The estimated 47,736 kg blue sheep biomass gives a snow leopard-to-blue sheep ratio of 1:59 on a weight basis. The high preference of snow leopard to domestic livestock appears to be influenced by a much smaller available biomass of wild prey than in other regions of Nepal (e.g., 78 kg/km2 in the KCA compared with a range of 200-300 kg/km2 in other regions of Nepal). Along with livestock insurance scheme improvement, there needs to be a focus on improved livestock guarding, predator-proof corrals as well as engaging and educating local people to be citizen scientists on the importance of snow leopard conservation, involving them in long-term monitoring programs and promotion of ecotourism.

BACKGROUND: While recent advances in genomics has enabled vast improvements in the quantification of genome-wide diversity and the identification of adaptive and deleterious alleles in model species, wildlife and non-model species have largely not reaped the same benefits. This has been attributed to the resources and infrastructure required to develop essential genomic datasets such as reference genomes. In the absence of a high-quality reference genome, cross-species alignments can provide reliable, cost-effective methods for single nucleotide variant (SNV) discovery. Here, we demonstrated the utility of cross-species genome alignment methods in gaining insights into population structure and functional genomic features in cheetah (Acinonyx jubatas), snow leopard (Panthera uncia) and Sumatran tiger (Panthera tigris sumatrae), relative to the domestic cat (Felis catus).
RESULTS: Alignment of big cats to the domestic cat reference assembly yielded nearly complete sequence coverage of the reference genome. From this, 38,839,061 variants in cheetah, 15,504,143 in snow leopard and 13,414,953 in Sumatran tiger were discovered and annotated. This method was able to delineate population structure but limited in its ability to adequately detect rare variants. Enrichment analysis of fixed and species-specific SNVs revealed insights into adaptive traits, evolutionary history and the pathogenesis of heritable diseases.
CONCLUSIONS: The high degree of synteny among felid genomes enabled the successful application of the domestic cat reference in high-quality SNV detection. The datasets presented here provide a useful resource for future studies into population dynamics, evolutionary history and genetic and disease management of big cats. This cross-species method of variant discovery provides genomic context for identifying annotated gene regions essential to understanding adaptive and deleterious variants that can improve conservation outcomes.

The cold and arid mountains and plateaus of High Asia, inhabited by a relatively sparse human population, a high density of livestock, and wildlife such as the iconic snow leopard Panthera uncia, are usually considered low risk for disease outbreaks. However, based on current knowledge about drivers of disease emergence, we show that High Asia is rapidly developing conditions that favor increased emergence of infectious diseases and zoonoses. This is because of the existing prevalence of potentially serious pathogens in the system; intensifying environmental degradation; rapid changes in local ecological, socio-ecological, and socio-economic factors; and global risk intensifiers such as climate change and globalization. To better understand and manage the risks posed by diseases to humans, livestock, and wildlife, there is an urgent need for establishing a disease surveillance system and improving human and animal health care. Public health must be integrated with conservation programs, more ecologically sustainable development efforts and long-term disease surveillance.

The snow leopard (Panthera uncia) found in central Asia is classified as vulnerable species by the International Union for Conservation of Nature (IUCN). Every year, large number of livestock are killed by snow leopards in Nepal, leading to economic loss to local communities and making human-snow leopard conflict a major threat to snow leopard conservation. We conducted formal and informal stakeholder\'s interviews to gather information related to livestock depredation with the aim to map the attack sites by the snow leopard. These sites were further validated by district forest office staffs to assess sources of bias. Attack sites older than 3 years were removed from the survey. We found 109 attack sites and visited all the sites for geo location purpose (GPS points of all unique sites were taken). We maintained at least a 100 m distance between attack locations to ensure that each attack location was unique, which resulted in 86 unique locations. A total of 235 km2 was used to define livestock depredation risk zone during this study. Using Maximum Entropy (MaxEnt) modeling, we found that distance to livestock sheds, distance to paths, aspect, and distance to roads were major contributing factors to the snow leopard\'s attacks. We identified 13.64 km2 as risk zone for livestock depredation from snow leopards in the study area. Furthermore, snow leopards preferred to attack livestock near livestock shelters, far from human paths and at moderate distance from motor roads. These identified attack zones should be managed both for snow leopard conservation and livestock protection in order to balance human livelihoods while protecting snow leopards and their habitats.

Oxidative stress (OS) results from the overproduction of reactive species. Nutrient intake can contribute positively or negatively to OS, and the lack of established nutrient requirements for most of the exotic species managed in zoos exacerbates the possibilities for nutrient imbalances that potentially could lead to reactive species production. The objective of this study was to evaluate the influence of nutrient intake and nutritional husbandry on markers of OS in male snow leopards (n = 14) maintained in U.S. facilities (n = 12). Diet samples and husbandry information were obtained and snow leopards were immobilized once for collection of blood. Samples were analyzed for chemical composition (diet and blood), antioxidant capacity (blood), and markers of OS (blood). Correlations between weekly nutrient intakes and markers of OS were analyzed by linear regression. Analyzed markers of OS included antioxidant enzymes (superoxide dismutase [SOD] and glutathione peroxidase [GPx]) and ferric reducing antioxidant potential that are protective against OS, and protein carbonyls, thiobarbituric acid reactive substances, and DNA/RNA damage that are indicative of oxidative damage. Weekly copper intake (10.1 to 80.2 mg) was negatively correlated with DNA/RNA damage (R 2 = 0.44; P = 0.01). Weekly sodium intake (4.4 to 12.7 g) was positively correlated with GPx activity (R 2 = 0.43; P = 0.04). More frequent feeding of whole prey (0.3 to 3 times/wk) was correlated with increased blood SOD activity (R 2 = 0.55; P < 0.01). In conclusion, greater dietary copper intake and more frequent feeding of whole prey may reduce OS in snow leopards. Dietary sodium intake and relationship with GPx activity should be further evaluated to determine benefit or detriment. No cause and effect can be inferred from our results, but our data suggest altering dietary form and nutrient concentrations may influence OS in snow leopards.

Snow leopards inhabit the cold, arid environments of the high mountains of South and Central Asia. These living conditions likely affect the abundance and composition of microbes with the capacity to infect these animals. It is important to investigate the microbes that snow leopards are exposed to detect infectious disease threats and define a baseline for future changes that may impact the health of this endangered felid. In this work, next-generation sequencing is used to investigate the fecal (and in a few cases serum) virome of seven snow leopards from the Tost Mountains of Mongolia. The viral species to which the greatest number of sequences reads showed high similarity was rotavirus. Excluding one animal with overall very few sequence reads, four of six animals (67%) displayed evidence of rotavirus infection. A serum sample of a male and a rectal swab of a female snow leopard produced sequence reads identical or closely similar to felid herpesvirus 1, providing the first evidence that this virus infects snow leopards. In addition, the rectal swab from the same female also displayed sequence reads most similar to feline papillomavirus 2, which is the first evidence for this virus infecting snow leopards. The rectal swabs from all animals also showed evidence for the presence of small circular DNA viruses, predominantly Circular Rep-Encoding Single-Stranded (CRESS) DNA viruses and in one case feline anellovirus. Several of the viruses implicated in the present study could affect the health of snow leopards. In animals which are under environmental stress, for example, young dispersing individuals and lactating females, health issues may be exacerbated by latent virus infections.

Conservation conflict over livestock depredation is one of the key drivers of large mammalian carnivore declines worldwide. Mitigating this conflict requires strategies informed by reliable knowledge of factors influencing livestock depredation. Wild prey and livestock abundance are critical factors influencing the extent of livestock depredation. We compared whether the extent of livestock predation by snow leopards Panthera uncia differed in relation to densities of wild prey, livestock, and snow leopards at two sites in Shey Phoksundo National Park, Nepal. We used camera trap-based spatially explicit capture-recapture models to estimate snow leopard density; double-observer surveys to estimate the density of their main prey species, the blue sheep Pseudois nayaur; and interview-based household surveys to estimate livestock population and number of livestock killed by snow leopards. The proportion of livestock lost per household was seven times higher in Upper Dolpa, the site which had higher snow leopard density (2.51 snow leopards per 100 km2) and higher livestock density (17.21 livestock per km2) compared to Lower Dolpa (1.21 snow leopards per 100 km2; 4.5 livestock per km2). The wild prey density was similar across the two sites (1.81 and 1.57 animals per km2 in Upper and Lower Dolpa, respectively). Our results suggest that livestock depredation level may largely be determined by the abundances of the snow leopards and livestock and predation levels on livestock can vary even at similar levels of wild prey density. In large parts of the snow leopard range, livestock production is indispensable to local livelihoods and livestock population is expected to increase to meet the demand of cashmere. Hence, we recommend that any efforts to increase livestock populations or conservation initiatives aimed at recovering or increasing snow leopard population be accompanied by better herding practices (e.g., predator-proof corrals) to protect livestock from snow leopard.