Poxviridae

痘病毒科
  • 文章类型: Journal Article
    水痘(以前称为猴痘)病毒和包括天花病毒在内的一些相关痘病毒对公众健康构成重大威胁,需要有效的预防和治疗策略。这项研究利用反向疫苗学方法来检索猴痘病毒的保守表位,并构建可以提供针对具有相似抗原特性的相关病毒的交叉保护的疫苗。猴痘病毒的选定毒力蛋白,MPXVgp165和病毒体核心蛋白P4a,进行表位定位以构建疫苗。使用选择的T细胞表位和B细胞表位构建两种疫苗,其中PADRE和人β-防御素佐剂缀合在疫苗序列中。这两种构建体被发现是高度抗原性的,非过敏性,无毒,和可溶性,表明它们有可能产生足够的免疫反应并对人类安全。选择疫苗构建体1用于分子动力学模拟研究。模拟研究表明,TLR8疫苗复合物比TLR3疫苗复合物更稳定。与TLR3结合的疫苗相比,TLR8结合的疫苗的更低的RMSD和RMSF值表明氢键的更好的稳定性和一致性。与TLR8结合的疫苗链的Rg值表明总体稳定性,而与TLR3结合的疫苗链在整个模拟过程中显示出偏差。这些结果表明,构建的疫苗可能是针对猴痘和相关病毒的潜在预防措施,需要进一步的实验验证来证实这些发现.
    Mpox (formerly known as monkeypox) virus and some related poxviruses including smallpox virus pose a significant threat to public health, and effective prevention and treatment strategies are needed. This study utilized a reverse vaccinology approach to retrieve conserved epitopes for monkeypox virus and construct a vaccine that could provide cross-protection against related viruses with similar antigenic properties. The selected virulent proteins of monkeypox virus, MPXVgp165, and Virion core protein P4a, were subjected to epitope mapping for vaccine construction. Two vaccines were constructed using selected T cell epitopes and B cell epitopes with PADRE and human beta-defensins adjuvants conjugated in the vaccine sequence. Both constructs were found to be highly antigenic, non-allergenic, nontoxic, and soluble, suggesting their potential to generate an adequate immune response and be safe for humans. Vaccine construct 1 was selected for molecular dynamic simulation studies. The simulation studies revealed that the TLR8-vaccine complex was more stable than the TLR3-vaccine complex. The lower RMSD and RMSF values of the TLR8 bound vaccine compared to the TLR3 bound vaccine suggested better stability and consistency of hydrogen bonds. The Rg values of the vaccine chain bound to TLR8 indicated overall stability, whereas the vaccine chain bound to TLR3 showed deviations throughout the simulation. These results suggest that the constructed vaccine could be a potential preventive measure against monkeypox and related viruses however, further experimental validation is required to confirm these findings.
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  • 文章类型: Journal Article
    背景:猴痘(Mpox)是一种重要的人类病原体,未经病因治疗。病毒-宿主相互作用组研究可能会促进我们对分子发病机理的理解,并导致发现合适的治疗靶标。
    方法:GEO表达数据集分析了不同宿主对痘病毒反应的mRNA谱变化,以鉴定共享途径,然后,建立了蛋白质-蛋白质相互作用(PPI)图谱。使用猴痘病毒(MPXV)和痘苗病毒(VACV)的病毒基因表达数据集来鉴定重要的病毒基因,并进一步研究它们与靶向分子文库的结合。
    结果:MPXV感染会干扰各种细胞途径,包括白细胞介素和MAPK信号。虽然大多数宿主差异表达基因(DEGs)在感染时主要下调,观察到组蛋白修饰剂和免疫相关基因的显著富集。PPI分析揭示了上述功能簇中基因的一组新的病毒特异性蛋白质相互作用。病毒DEGs在三种研究的细胞类型中表现出可变的表达模式:原代人单核细胞,原代人成纤维细胞,还有HeLa,导致118种通常失调的蛋白质。基于其组蛋白调节和免疫抑制特性,将MPXV和VACV的Poxvirus蛋白C6R衍生的蛋白K7和K7R优先作为潜在治疗干预的靶标。在计算对接和分子动力学(MD)实验中,这些蛋白质被证明与候选小分子S3I-201结合,后者被进一步优先用于铅的开发.
    结果:MPXV通过参与组蛋白修饰和免疫逃避策略来规避细胞抗病毒防御。C6R衍生的蛋白K7结合候选分子S3I-201是用于治疗水痘的优先有希望的候选物。
    BACKGROUND: Monkeypox (Mpox) is an important human pathogen without etiological treatment. A viral-host interactome study may advance our understanding of molecular pathogenesis and lead to the discovery of suitable therapeutic targets.
    METHODS: GEO Expression datasets characterizing mRNA profile changes in different host responses to poxviruses were analyzed for shared pathway identification, and then, the Protein-protein interaction (PPI) maps were built. The viral gene expression datasets of Monkeypox virus (MPXV) and Vaccinia virus (VACV) were used to identify the significant viral genes and further investigated for their binding to the library of targeting molecules.
    RESULTS: Infection with MPXV interferes with various cellular pathways, including interleukin and MAPK signaling. While most host differentially expressed genes (DEGs) are predominantly downregulated upon infection, marked enrichments in histone modifiers and immune-related genes were observed. PPI analysis revealed a set of novel virus-specific protein interactions for the genes in the above functional clusters. The viral DEGs exhibited variable expression patterns in three studied cell types: primary human monocytes, primary human fibroblast, and HeLa, resulting in 118 commonly deregulated proteins. Poxvirus proteins C6R derived protein K7 and K7R of MPXV and VACV were prioritized as targets for potential therapeutic interventions based on their histone-regulating and immunosuppressive properties. In the computational docking and Molecular Dynamics (MD) experiments, these proteins were shown to bind the candidate small molecule S3I-201, which was further prioritized for lead development.
    RESULTS: MPXV circumvents cellular antiviral defenses by engaging histone modification and immune evasion strategies. C6R-derived protein K7 binding candidate molecule S3I-201 is a priority promising candidate for treating Mpox.
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  • 文章类型: Journal Article
    2023年的猴痘(mpox)流行是由1971年追溯到尼日利亚的猴痘病毒(MPXV)谱系的IIb亚进化枝引起的。人与人之间的传播似乎高于进化枝I或IIaMPXV,可能是由IIbMPXV亚进化枝的基因组变化引起的。关键的基因组变化可能发生在基因组的低复杂度区域(LCR),这些序列具有挑战性,并且经常被认为是无信息的。这里,使用高度敏感的技术组合,我们确定了一个代表当前流行的高质量MPXV基因组序列,LCR以前所未有的精度解析。这揭示了LCR内的短串联重复的显著变化。我们证明了MPXV基因组中的LCR熵显着高于单核苷酸多态性(SNP),并且LCR不是随机分布的。在硅分析中表明,表达,翻译,稳定性,或MPXV直系同源痘病毒基因(OPGs)的功能,包括OPG153,OPG204和OPG208,可能会受到与已建立的正痘病毒“基因组手风琴”进化策略一致的影响。我们认为,侧重于表型MPXV差异的基因组研究应考虑LCR变异性。
    The 2023 monkeypox (mpox) epidemic was caused by a subclade IIb descendant of a monkeypox virus (MPXV) lineage traced back to Nigeria in 1971. Person-to-person transmission appears higher than for clade I or subclade IIa MPXV, possibly caused by genomic changes in subclade IIb MPXV. Key genomic changes could occur in the genome\'s low-complexity regions (LCRs), which are challenging to sequence and are often dismissed as uninformative. Here, using a combination of highly sensitive techniques, we determine a high-quality MPXV genome sequence of a representative of the current epidemic with LCRs resolved at unprecedented accuracy. This reveals significant variation in short tandem repeats within LCRs. We demonstrate that LCR entropy in the MPXV genome is significantly higher than that of single-nucleotide polymorphisms (SNPs) and that LCRs are not randomly distributed. In silico analyses indicate that expression, translation, stability, or function of MPXV orthologous poxvirus genes (OPGs), including OPG153, OPG204, and OPG208, could be affected in a manner consistent with the established \"genomic accordion\" evolutionary strategies of orthopoxviruses. We posit that genomic studies focusing on phenotypic MPXV differences should consider LCR variability.
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  • 文章类型: Journal Article
    强心苷(CGs)是天然类固醇苷,作为细胞钠钾ATP酶泵的抑制剂。尽管传统上被认为对人细胞有毒,CGs被广泛用作治疗心血管相关医学病症的药物。最近,CGs已被开发为潜在的抗病毒药物并抑制一系列RNA和DNA病毒的复制。以前,复合筛选鉴定出抑制牛痘病毒(VACV)感染的CGs。然而,没有对这些化合物的抑制潜力进行进一步的研究,也没有调查他们影响的痘病毒生命周期的阶段。这里,我们调查了一组CGs的抗痘病毒活性。我们发现所有测试的CG都是VACV复制的有效抑制剂。我们的病毒学实验表明,CGs不会影响病毒的感染性,绑定,或进入。相反,使用表达由VACV启动子控制的报告蛋白的重组病毒和阿拉伯糖苷释放测定的实验表明,CGs在不同浓度下抑制早期和晚期VACV蛋白的表达。使用电子显微镜确认在CG存在下缺乏病毒组装。因此,我们扩大了我们对具有抗痘病毒活性的化合物的理解,并强调了一种尚未被识别的机制,通过该机制可以抑制痘病毒的复制。
    Cardiac glycosides (CGs) are natural steroid glycosides, which act as inhibitors of the cellular sodium-potassium ATPase pump. Although traditionally considered toxic to human cells, CGs are widely used as drugs for the treatment of cardiovascular-related medical conditions. More recently, CGs have been explored as potential anti-viral drugs and inhibit replication of a range of RNA and DNA viruses. Previously, a compound screen identified CGs that inhibited vaccinia virus (VACV) infection. However, no further investigation of the inhibitory potential of these compounds was performed, nor was there investigation of the stage(s) of the poxvirus lifecycle they impacted. Here, we investigated the anti-poxvirus activity of a broad panel of CGs. We found that all CGs tested were potent inhibitors of VACV replication. Our virological experiments showed that CGs did not impact virus infectivity, binding, or entry. Rather, experiments using recombinant viruses expressing reporter proteins controlled by VACV promoters and arabinoside release assays demonstrated that CGs inhibited early and late VACV protein expression at different concentrations. Lack of virus assembly in the presence of CGs was confirmed using electron microscopy. Thus, we expand our understanding of compounds with anti-poxvirus activity and highlight a yet unrecognized mechanism by which poxvirus replication can be inhibited.
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  • 文章类型: Journal Article
    非洲猪瘟病毒(ASFV)属于淡水霉素科,核质大DNA病毒(NCLDV)组的一部分。关于ASFV在宿主细胞中的内化和在感染早期发生的融合膜事件知之甚少。痘病毒,也是NCLDV的成员,以牛痘病毒(VACV)为代表,很大,信封,双链DNA病毒。痘病毒被认为是独特的,因为它具有复杂的进入融合复合物(EFC),该复合物由11种高度保守的蛋白质组成,并整合到成熟的病毒体的膜中。方法学技术的最新进展再次揭示了VACVEFC蛋白之间的几种联系。在这项研究中,我们通过鉴定10种与VACVEFC蛋白结构相似的候选蛋白,探索了类似ASFVEFC的可能性.这可以揭示这些ASFV蛋白的关键功能,提请注意两个病毒家族之间的共同特征,表明ASFV进入融合复合物的潜在存在。
    African swine fever virus (ASFV) belongs to the family of Asfarviridae, part of the group of nucleocytoplasmic large DNA viruses (NCLDV). Little is known about the internalization of ASFV in the host cell and the fusion membrane events that take place at early stages of the infection. Poxviruses, also members of the NCLDV and represented by vaccinia virus (VACV), are large, enveloped, double-stranded DNA viruses. Poxviruses were considered unique in having an elaborate entry-fusion complex (EFC) composed of 11 highly conserved proteins integrated into the membrane of mature virions. Recent advances in methodological techniques have again revealed several connections between VACV EFC proteins. In this study, we explored the possibility of an analogous ASFV EFC by identifying ten candidate proteins exhibiting structural similarities with VACV EFC proteins. This could reveal key functions of these ASFV proteins, drawing attention to shared features between the two virus families, suggesting the potential existence of an ASFV entry-fusion complex.
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  • 文章类型: Journal Article
    2022年9月,在Tshuapa省报告了由猪痘病毒引起的痘痘样病变的猪死亡。刚果民主共和国。在周围社区中同时发现了两个人类水痘病例。需要特异性诊断和稳健的测序来表征多种痘病毒并防止潜在的痘病毒传播。
    In September 2022, deaths of pigs manifesting pox-like lesions caused by swinepox virus were reported in Tshuapa Province, Democratic Republic of the Congo. Two human mpox cases were found concurrently in the surrounding community. Specific diagnostics and robust sequencing are needed to characterize multiple poxviruses and prevent potential poxvirus transmission.
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  • 文章类型: Journal Article
    许多病毒在感染过程中会改变宿主微管(MT)网络,但是在许多情况下,它们如何以及为什么引起这些变化尚不清楚。我们表明,牛痘病毒(VV)编码的A51R蛋白是一种MT相关蛋白(MAP),可直接结合MT并通过促进其生长和防止其解聚来稳定它们。此外,我们证明A51R-MT相互作用在来自多个痘病毒属的A51R蛋白中是保守的,高度保守,A51R蛋白中带正电荷的残基介导这些相互作用。引人注目的是,我们发现编码MT相互作用缺陷型A51R蛋白的病毒无法抑制巨噬细胞中依赖活性氧(ROS)的抗病毒反应,这导致病毒粒子形态发生的阻断。此外,A51R-MT相互作用是小鼠VV毒力所必需的。总的来说,我们的数据显示,痘病毒MAP-MT相互作用克服了巨噬细胞中细胞固有的抗病毒ROS反应,否则该反应将阻断动物中病毒的形态发生和复制.
    Numerous viruses alter host microtubule (MT) networks during infection, but how and why they induce these changes is unclear in many cases. We show that the vaccinia virus (VV)-encoded A51R protein is a MT-associated protein (MAP) that directly binds MTs and stabilizes them by both promoting their growth and preventing their depolymerization. Furthermore, we demonstrate that A51R-MT interactions are conserved across A51R proteins from multiple poxvirus genera, and highly conserved, positively charged residues in A51R proteins mediate these interactions. Strikingly, we find that viruses encoding MT interaction-deficient A51R proteins fail to suppress a reactive oxygen species (ROS)-dependent antiviral response in macrophages that leads to a block in virion morphogenesis. Moreover, A51R-MT interactions are required for VV virulence in mice. Collectively, our data show that poxviral MAP-MT interactions overcome a cell-intrinsic antiviral ROS response in macrophages that would otherwise block virus morphogenesis and replication in animals.
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  • 文章类型: Letter
    200多年来,传染性软体动物这个名字是一种皮肤病,它与软体动物(地球上第二大动物群体)和这种高度传染性的传染病不公平地联系在一起。在这里,提出的论点表明了继续使用这个名字的严重问题,包括动物福利问题。因此,尽量减少对软体动物的生物多样性和保护的任何不必要的影响,我们遵循世卫组织命名疾病的最佳做法,建议使用新术语“水痘”或“水疣”作为传染性软体动物的同义词。
    For over 200 years, the name molluscum contagiosum-a dermatological disease-has unfairly associated molluscs (the second largest group of animals on the planet) with this highly contagious infectious disease. Herein, arguments are presented demonstrating the serious problem of continuing to use this name, including animal welfare concerns. Thus, to minimize any unnecessary impacts on the biodiversity and conservation of molluscs, we follow WHO best practices in naming diseases to suggest the use of the new term \'wpox\' or \'water warts\' as a synonym for molluscum contagiosum.
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  • 文章类型: Case Reports
    在一名24岁女性的双手手指上证实了人类口蹄疫(称为传染性湿疹或动物的传染性/传染性脓疱性皮炎),在2023年4月用哺乳瓶喂养患病的羔羊后。除了皮肤症状,她有低热(37.6°C)和两个腋窝淋巴结肿大。存在orf病毒(副痘病毒属,确认了Poxviridae家族),这个菌株,Baja/2023/HUN(OR372161-OR372163),在四个测试的基因组区域(ORF011/B2L,ORF019,ORF020/VIR,和ORF056)。这是匈牙利首例人类感染被忽视的人畜共患orf病毒的病例。
    Human orf disease (called ecthyma contagiosum or contagious/infectious pustular dermatitis in animals) was confirmed on the fingers of both hands of a 24-year-old female, after feeding diseased lambs with a nursing bottle in April 2023. In addition to skin symptoms, she had low-grade fever (37.6°C) and swollen lymph nodes in both axilla. The presence of orf virus (genus Parapoxvirus, family Poxviridae) was confirmed, and this strain, Baja/2023/HUN (OR372161-OR372163), was found to have > 98% nucleotide sequence identity to sheep-origin orf viruses in four tested genome regions (ORF011/B2L, ORF019, ORF020/VIR, and ORF056). This is the first report of a human case of infection with the neglected zoonotic orf virus in Hungary.
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  • 文章类型: Journal Article
    波克斯病毒科是一个大家庭,复杂,信封,和双链DNA病毒。这个家族的成员无处不在,众所周知,在人类和其他类型的动物中也会引起传染病。分类上,痘病毒科分为两个亚科,即毛虫科(影响脊椎动物)和昆虫科(影响昆虫)。根据基因组结构和进化关系,将Chordopoxvirinae亚科的成员进一步分为18个属。在这18个属中,四属,即软体动物痘病毒,正痘病毒,副痘病毒,和Yatapoxvirus,以感染人类而闻名。痘病毒科的一些流行成员是天花病毒,疫苗病毒,水痘(以前称为猴痘),牛痘,等。对于开发针对痘病毒的有效疫苗仍然存在迫切的需求。基于综合免疫信息学和人工智能(AI)的方法已成为设计针对传染性新兴传染病的多表位疫苗的重要方法。尽管免疫信息学和基于人工智能的技术取得了重大进展,有限的方法可用于预测表位。在这项研究中,我们提出了一种独特的方法来预测多种痘病毒的潜在抗原和T细胞表位。有了PoxiPred,我们开发了一种基于AI的工具,该工具经过了痘病毒抗原和表位的训练和测试。我们的工具能够从25种不同的痘病毒中找到3191种抗原蛋白。从这些抗原蛋白中,PoxiPred冗余定位每个蛋白质多达五个表位,产生16,817个潜在的T细胞表位,这些表位主要是(即,92%)预测为对CD8+T细胞有反应性。PoxiPred能够,在一次奔跑中,用一个单一输入鉴定痘病毒的抗原和T细胞表位,即,任何痘病毒的蛋白质组文件.
    Poxviridae is a family of large, complex, enveloped, and double-stranded DNA viruses. The members of this family are ubiquitous and well known to cause contagious diseases in humans and other types of animals as well. Taxonomically, the poxviridae family is classified into two subfamilies, namely Chordopoxvirinae (affecting vertebrates) and Entomopoxvirinae (affecting insects). The members of the Chordopoxvirinae subfamily are further divided into 18 genera based on the genome architecture and evolutionary relationship. Of these 18 genera, four genera, namely Molluscipoxvirus, Orthopoxvirus, Parapoxvirus, and Yatapoxvirus, are known for infecting humans. Some of the popular members of poxviridae are variola virus, vaccine virus, Mpox (formerly known as monkeypox), cowpox, etc. There is still a pressing demand for the development of effective vaccines against poxviruses. Integrated immunoinformatics and artificial-intelligence (AI)-based methods have emerged as important approaches to design multi-epitope vaccines against contagious emerging infectious diseases. Despite significant progress in immunoinformatics and AI-based techniques, limited methods are available to predict the epitopes. In this study, we have proposed a unique method to predict the potential antigens and T-cell epitopes for multiple poxviruses. With PoxiPred, we developed an AI-based tool that was trained and tested with the antigens and epitopes of poxviruses. Our tool was able to locate 3191 antigen proteins from 25 distinct poxviruses. From these antigenic proteins, PoxiPred redundantly located up to five epitopes per protein, resulting in 16,817 potential T-cell epitopes which were mostly (i.e., 92%) predicted as being reactive to CD8+ T-cells. PoxiPred is able to, on a single run, identify antigens and T-cell epitopes for poxviruses with one single input, i.e., the proteome file of any poxvirus.
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