UNASSIGNED: Brain-computer interfaces (BCIs) are systems that acquire the brain\'s electrical activity and provide control of external devices. Since electroencephalography (EEG) is the simplest non-invasive method to capture the brain\'s electrical activity, EEG-based BCIs are very popular designs. Aside from classifying the extremity movements, recent BCI studies have focused on the accurate coding of the finger movements on the same hand through their classification by employing machine learning techniques. State-of-the-art studies were interested in coding five finger movements by neglecting the brain\'s idle case (i.e., the state that brain is not performing any mental tasks). This may easily cause more false positives and degrade the classification performances dramatically, thus, the performance of BCIs. This study aims to propose a more realistic system to decode the movements of five fingers and the no mental task (NoMT) case from EEG signals.
UNASSIGNED: In this study, a novel praxis for feature extraction is utilized. Using Proper Rotational Components (PRCs) computed through Intrinsic Time Scale Decomposition (ITD), which has been successfully applied in different biomedical signals recently, features for classification are extracted. Subsequently, these features were applied to the inputs of well-known classifiers and their different implementations to discriminate between these six classes. The highest classifier performances obtained in both subject-independent and subject-dependent cases were reported. In addition, the ANOVA-based feature selection was examined to determine whether statistically significant features have an impact on the classifier performances or not.
UNASSIGNED: As a result, the Ensemble Learning classifier achieved the highest accuracy of 55.0% among the tested classifiers, and ANOVA-based feature selection increases the performance of classifiers on five-finger movement determination in EEG-based BCI systems.
UNASSIGNED: When compared with similar studies, proposed praxis achieved a modest yet significant improvement in classification performance although the number of classes was incremented by one (i.e., NoMT).

Kinase fusion genes are the most active fusion gene group in human cancer fusion genes. To help choose the clinically significant kinase so that the cancer patients that have fusion genes can be better diagnosed, we need a metric to infer the assessment of kinases in pan-cancer fusion genes rather than relying on the sample frequency expressed fusion genes. Most of all, multiple studies assessed human kinases as the drug targets using multiple types of genomic and clinical information, but none used the kinase fusion genes in their study. The assessment studies of kinase without kinase fusion gene events can miss the effect of one of the mechanisms that enhance the kinase function in cancer. To fill this gap, in this study, we suggest a novel way of assessing genes using a network propagation approach to infer how likely individual kinases influence the kinase fusion gene network composed of ~5K kinase fusion gene pairs. To select a better seed of propagation, we chose the top genes via dimensionality reduction like a principal component or latent layer information of six features of individual genes in pan-cancer fusion genes. Our approach may provide a novel way to assess of human kinases in cancer.

UNASSIGNED: While previous studies have suggested close association of psychological variables of students withtheir higher-order cognitive abilities, such studies have largely been lacking for third world countries like India, with their unique socio-economic-cultural set of challenges. We aimed to investigate the relationship between psychological variables (depression, anxiety and stress) and cognitive functions among Indian students, and to predict cognitive performance as a function of these variables.
UNASSIGNED: Four hundred and thirteen university students were systematically selected using purposive sampling. Widely used and validated offline questionnaires were used to assess their psychological and cognitive statuses. Correlational analyses were conducted to examine the associations between these variables. An Artificial Neural Network (ANN) model was applied to predict cognitive levels based on the scores of psychological variables.
UNASSIGNED: Correlational analyses revealed negative correlations between emotional distress and cognitive functioning. Principal Component Analysis (PCA) reduced the dimensionality of the input data, effectively capturing the variance with fewer features. The feature weight analysis indicated a balanced contribution of each mental health symptom, with particular emphasis on one of the symptoms. The ANN model demonstrated moderate predictive performance, explaining a portion of the variance in cognitive levels based on the psychological variables.
UNASSIGNED: The study confirms significant associations between emotional statuses of university students with their cognitive abilities. Specifically, we provide evidence for the first time that in Indian students, self-reported higher levels of stress, anxiety, and depression are linked to lower performance in cognitive tests. The application of PCA and feature weight analysis provided deeper insights into the structure of the predictive model. Notably, use of the ANN model provided insights into predicting these cognitive domains as a function of the emotional attributes. Our results emphasize the importance of addressing mental health concerns and implementing interventions for the enhancement of cognitive functions in university students.

In the field of audiology, achieving accurate discrimination of auditory impairments remains a formidable challenge. Conditions such as deafness and tinnitus exert a substantial impact on patients\' overall quality of life, emphasizing the urgent need for precise and efficient classification methods. This study introduces an innovative approach, utilizing Multi-View Brain Network data acquired from three distinct cohorts: 51 deaf patients, 54 with tinnitus, and 42 normal controls. Electroencephalogram (EEG) recording data were meticulously collected, focusing on 70 electrodes attached to an end-to-end key with 10 regions of interest (ROI). This data is synergistically integrated with machine learning algorithms. To tackle the inherently high-dimensional nature of brain connectivity data, principal component analysis (PCA) is employed for feature reduction, enhancing interpretability. The proposed approach undergoes evaluation using ensemble learning techniques, including Random Forest, Extra Trees, Gradient Boosting, and CatBoost. The performance of the proposed models is scrutinized across a comprehensive set of metrics, encompassing cross-validation accuracy (CVA), precision, recall, F1-score, Kappa, and Matthews correlation coefficient (MCC). The proposed models demonstrate statistical significance and effectively diagnose auditory disorders, contributing to early detection and personalized treatment, thereby enhancing patient outcomes and quality of life. Notably, they exhibit reliability and robustness, characterized by high Kappa and MCC values. This research represents a significant advancement in the intersection of audiology, neuroimaging, and machine learning, with transformative implications for clinical practice and care.

Feature selection is a critical component of machine learning and data mining which addresses challenges like irrelevance, noise, redundancy in large-scale data etc., which often result in the curse of dimensionality. This study employs a K-nearest neighbour wrapper to implement feature selection using six nature-inspired algorithms, derived from human behaviour and mammal-inspired techniques. Evaluated on six real-world datasets, the study aims to compare the performance of these algorithms in terms of accuracy, feature count, fitness, convergence and computational cost. The findings underscore the efficacy of the Human Learning Optimization, Poor and Rich Optimization and Grey Wolf Optimizer algorithms across multiple performance metrics. For instance, for mean fitness, Human Learning Optimization outperforms the others, followed by Poor and Rich Optimization and Harmony Search. The study suggests the potential of human-inspired algorithms, particularly Poor and Rich Optimization, in robust feature selection without compromising classification accuracy.

Breast cancer is the second most common cancer among women worldwide, and the diagnosis by pathologists is a time-consuming procedure and subjective. Computer-aided diagnosis frameworks are utilized to relieve pathologist workload by classifying the data automatically, in which deep convolutional neural networks (CNNs) are effective solutions. The features extracted from the activation layer of pre-trained CNNs are called deep convolutional activation features (DeCAF). In this paper, we have analyzed that all DeCAF features are not necessarily led to higher accuracy in the classification task and dimension reduction plays an important role. We have proposed reduced DeCAF (R-DeCAF) for this purpose, and different dimension reduction methods are applied to achieve an effective combination of features by capturing the essence of DeCAF features. This framework uses pre-trained CNNs such as AlexNet, VGG-16, and VGG-19 as feature extractors in transfer learning mode. The DeCAF features are extracted from the first fully connected layer of the mentioned CNNs, and a support vector machine is used for classification. Among linear and nonlinear dimensionality reduction algorithms, linear approaches such as principal component analysis (PCA) represent a better combination among deep features and lead to higher accuracy in the classification task using a small number of features considering a specific amount of cumulative explained variance (CEV) of features. The proposed method is validated using experimental BreakHis and ICIAR datasets. Comprehensive results show improvement in the classification accuracy up to 4.3% with a feature vector size (FVS) of 23 and CEV equal to 0.15.

It has been a long time since we use magnetic resonance imaging (MRI) to detect brain diseases and many useful techniques have been developed for this task. However, there is still a potential for further improvement of classification of brain diseases in order to be sure of the results. In this research we presented, for the first time, a non-linear feature extraction method from the MRI sub-images that are obtained from the three levels of the two-dimensional Dual tree complex wavelet transform (2D DT-CWT) in order to classify multiple brain disease. After extracting the non-linear features from the sub-images, we used the spectral regression discriminant analysis (SRDA) algorithm to reduce the classifying features. Instead of using the deep neural networks that are computationally expensive, we proposed the Hybrid RBF network that uses the k-means and recursive least squares (RLS) algorithm simultaneously in its structure for classification. To evaluate the performance of RBF networks with hybrid learning algorithms, we classify nine brain diseases based on MRI processing using these networks, and compare the results with the previously presented classifiers including, supporting vector machines (SVM) and K-nearest neighbour (KNN). Comprehensive comparisons are made with the recently proposed cases by extracting various types and numbers of features. Our aim in this paper is to reduce the complexity and improve the classifying results with the hybrid RBF classifier and the results showed 100 percent classification accuracy in both the two class and the multiple classification of brain diseases in 8 and 10 classes. In this paper, we provided a low computational and precise method for brain MRI disease classification. the results show that the proposed method is not only accurate but also computationally reasonable.

BACKGROUND: The field of epigenomics holds great promise in understanding and treating disease with advances in machine learning (ML) and artificial intelligence being vitally important in this pursuit. Increasingly, research now utilises DNA methylation measures at cytosine-guanine dinucleotides (CpG) to detect disease and estimate biological traits such as aging. Given the challenge of high dimensionality of DNA methylation data, feature-selection techniques are commonly employed to reduce dimensionality and identify the most important subset of features. In this study, our aim was to test and compare a range of feature-selection methods and ML algorithms in the development of a novel DNA methylation-based telomere length (TL) estimator. We utilised both nested cross-validation and two independent test sets for the comparisons.
RESULTS: We found that principal component analysis in advance of elastic net regression led to the overall best performing estimator when evaluated using a nested cross-validation analysis and two independent test cohorts. This approach achieved a correlation between estimated and actual TL of 0.295 (83.4% CI [0.201, 0.384]) on the EXTEND test data set. Contrastingly, the baseline model of elastic net regression with no prior feature reduction stage performed less well in general-suggesting a prior feature-selection stage may have important utility. A previously developed TL estimator, DNAmTL, achieved a correlation of 0.216 (83.4% CI [0.118, 0.310]) on the EXTEND data. Additionally, we observed that different DNA methylation-based TL estimators, which have few common CpGs, are associated with many of the same biological entities.
CONCLUSIONS: The variance in performance across tested approaches shows that estimators are sensitive to data set heterogeneity and the development of an optimal DNA methylation-based estimator should benefit from the robust methodological approach used in this study. Moreover, our methodology which utilises a range of feature-selection approaches and ML algorithms could be applied to other biological markers and disease phenotypes, to examine their relationship with DNA methylation and predictive value.

DNA synthesis is widely used in synthetic biology to construct and assemble sequences ranging from short RBS to ultra-long synthetic genomes. Many sequence features, such as the GC content and repeat sequences, are known to affect the synthesis difficulty and subsequently the synthesis cost. In addition, there are latent sequence features, especially local characteristics of the sequence, which might affect the DNA synthesis process as well. Reliable prediction of the synthesis difficulty for a given sequence is important for reducing the cost, but this remains a challenge. In this study, we propose a new automated machine learning (AutoML) approach to predict the DNA synthesis difficulty, which achieves an F1 score of 0.930 and outperforms the current state-of-the-art model. We found local sequence features that were neglected in previous methods, which might also affect the difficulty of DNA synthesis. Moreover, experimental validation based on ten genes of Escherichia coli strain MG1655 shows that our model can achieve an 80% accuracy, which is also better than the state of art. Moreover, we developed the cloud platform SCP4SSD using an entirely cloud-based serverless architecture for the convenience of the end users.

Disease phenotypes are characterized by signs (what a physician observes during the examination of a patient) and symptoms (the complaints of a patient to a physician). Large repositories of disease phenotypes are accessible through the Online Mendelian Inheritance of Man, Human Phenotype Ontology, and Orphadata initiatives. Many of the diseases in these datasets are neurologic. For each repository, the phenotype of neurologic disease is represented as a list of concepts of variable length where the concepts are selected from a restricted ontology. Visualizations of these concept lists are not provided. We address this limitation by using subsumption to reduce the number of descriptive features from 2,946 classes into thirty superclasses. Phenotype feature lists of variable lengths were converted into fixed-length vectors. Phenotype vectors were aggregated into matrices and visualized as heat maps that allowed side-by-side disease comparisons. Individual diseases (representing a row in the matrix) were visualized as word clouds. We illustrate the utility of this approach by visualizing the neuro-phenotypes of 32 dystonic diseases from Orphadata. Subsumption can collapse phenotype features into superclasses, phenotype lists can be vectorized, and phenotypes vectors can be visualized as heat maps and word clouds.