Endoribonucleases

核糖核酸内切酶
  • 文章类型: Journal Article
    3型先天淋巴细胞(ILC3)是肠道稳态和上皮屏障完整性的关键调节因子。在本期JCI中,Cao和他的同事们发现了内质网(ER)应激的传感器,需要肌醇的激酶1α/X-盒结合蛋白1(IRE1α/XBP1)途径,对ILC3的功能进行了微调。IRE1α和XBP1在ILC3s限制小鼠肠道炎症中的激活,并与ustekinumab的疗效相关,IL-12/IL-23阻断剂,克罗恩病患者。这些结果促进了我们对使用ILC作为生物标志物的理解,不仅可以预测疾病结果,而且可以指示炎症性肠病患者对生物制剂的反应。
    Type 3 innate lymphoid cells (ILC3s) are key regulators of intestinal homeostasis and epithelial barrier integrity. In this issue of the JCI, Cao and colleagues found that a sensor of endoplasmic reticulum (ER) stress, the inositol-requiring kinase 1α/X-box-binding protein 1 (IRE1α/XBP1) pathway, fine-tuned the functions of ILC3s. Activation of IRE1α and XBP1 in ILC3s limited intestinal inflammation in mice and correlated with the efficacy of ustekinumab, an IL-12/IL-23 blocker, in patients with Crohn\'s disease. These results advance our understanding in the use of ILCs as biomarkers not only to predict disease outcomes but also to indicate the response to biologicals in patients with inflammatory bowel disease.
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  • 文章类型: Journal Article
    目的:眼眶成纤维细胞在Graves眼眶病(GO)的发病机制中起关键作用,和先前的研究结果表明,内质网(ER)应激和自噬也有助于GO。在这项研究中,我们调查了目前尚不清楚的需要肌醇的酶1(IRE1)和相关的自噬过程在GO的促纤维化机制中的作用。
    方法:在手术过程中从8名GO患者和6名正常个体获得眼眶脂肪/结缔组织。用IRE1小干扰RNA转染GO成纤维细胞,用巴弗洛霉素A1(Baf-A1)处理,以评估ER应激和自噬的抑制作用,用转化生长因子(TGF)-β刺激后,通过蛋白质印迹分析蛋白质表达水平。
    结果:TGF-β刺激上调GO眶成纤维细胞IRE1,而沉默IRE1抑制纤维化和自噬反应。同样,Baf-A1,晚期自噬抑制剂,降低促纤维化蛋白的表达。
    结论:IRE1介导自噬和GO的促纤维化机制,这为GO的发病机制提供了更全面的解释,并提出了潜在的治疗靶点。
    OBJECTIVE: Orbital fibroblasts play key roles in the pathogenesis of Graves\' orbitopathy (GO), and previous findings have shown that endoplasmic reticulum (ER) stress and autophagy also contribute to GO. In this study, we investigated the presently unclear roles of inositol-requiring enzyme 1 (IRE1) and related autophagy processes in the pro-fibrotic mechanism of GO.
    METHODS: Orbital adipose/connective tissues were obtained from eight GO patients and six normal individuals during surgery. GO fibroblasts were transfected with IRE1 small-interfering RNA and treated with bafilomycin A1 (Baf-A1) to evaluate the inhibitory effects of ER stress and autophagy, and protein-expression levels were analyzed through western blotting after stimulation with transforming growth factor (TGF)-β.
    RESULTS: TGF-β stimulation upregulated IRE1 in GO orbital fibroblasts, whereas silencing IRE1 suppressed fibrosis and autophagy responses. Similarly, Baf-A1, an inhibitor of late-phase autophagy, decreased the expression of pro-fibrotic proteins.
    CONCLUSIONS: IRE1 mediates autophagy and the pro-fibrotic mechanism of GO, which provides a more comprehensive interpretation of GO pathogenesis and suggests potential therapeutic targets.
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  • 文章类型: Journal Article
    未折叠的蛋白质反应可以从生存前转变为适应不良,促凋亡模式。在ER压力期间,IRE1α传感器二聚化,变得磷酸化,并激活XBP1拼接,在ER蛋白工厂增加折叠能力。在适应不良的ER应激期间,开启IRE1α内切核酸酶对内源性mRNA的活性的步骤仍然未知。这里,我们表明,尽管有必要,IRE1α二聚化不足以触发磷酸化。需要IRE1α二聚体之间的随机和/或引导碰撞来引发交叉磷酸化和内切核酸酶活性。因此,在ER膜中达到IRE1α二聚体的临界浓度是关键事件。稳定的IRE1α簇的形成对于RNase活性不是必需的。然而,聚类可以调节反应的效力,促进二聚体之间的相互作用,并降低磷酸化IRE1α对磷酸酶的可及性。IRE1α分子的逐步激活及其在稳态下的低浓度可防止过度反应,仅在强烈的压力条件下释放成熟的IRE1活性。
    The unfolded protein response can switch from a pro-survival to a maladaptive, pro-apoptotic mode. During ER stress, IRE1α sensors dimerize, become phosphorylated, and activate XBP1 splicing, increasing folding capacity in the ER protein factory. The steps that turn on the IRE1α endonuclease activity against endogenous mRNAs during maladaptive ER stress are still unknown. Here, we show that although necessary, IRE1α dimerization is not sufficient to trigger phosphorylation. Random and/or guided collisions among IRE1α dimers are needed to elicit cross-phosphorylation and endonuclease activities. Thus, reaching a critical concentration of IRE1α dimers in the ER membrane is a key event. Formation of stable IRE1α clusters is not necessary for RNase activity. However, clustering could modulate the potency of the response, promoting interactions between dimers and decreasing the accessibility of phosphorylated IRE1α to phosphatases. The stepwise activation of IRE1α molecules and their low concentration at the steady state prevent excessive responses, unleashing full-blown IRE1 activity only upon intense stress conditions.
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  • 文章类型: Journal Article
    哺乳动物的新皮质包括一个巨大的多样性关于细胞类型,形态学,和连通性。在这项工作中,我们发现了基因表达调控的转录后机制,蛋白质翻译,作为皮质神经元身份的决定因素。我们发现后来出生的神经元的祖细胞中蛋白质合成的特定上调,并表明翻译速率和伴随的蛋白质半衰期是皮质神经元亚型的固有特征。在小分子筛选中,我们确定Ire1α是Satb2表达和神经元极性的调节因子。在发育中的大脑中,Ire1α调节全球翻译率,协调核糖体交通,和eIF4A1的表达式。此外,我们证明Satb2mRNA翻译需要eIF4A1解旋酶活性对其5'-非翻译区。总之,我们表明皮质神经元的多样性是由超越基因转录的机制产生的,Ire1α保护的蛋白质稳定是大脑发育的重要调节剂。
    The mammalian neocortex comprises an enormous diversity regarding cell types, morphology, and connectivity. In this work, we discover a post-transcriptional mechanism of gene expression regulation, protein translation, as a determinant of cortical neuron identity. We find specific upregulation of protein synthesis in the progenitors of later-born neurons and show that translation rates and concomitantly protein half-lives are inherent features of cortical neuron subtypes. In a small molecule screening, we identify Ire1α as a regulator of Satb2 expression and neuronal polarity. In the developing brain, Ire1α regulates global translation rates, coordinates ribosome traffic, and the expression of eIF4A1. Furthermore, we demonstrate that the Satb2 mRNA translation requires eIF4A1 helicase activity towards its 5\'-untranslated region. Altogether, we show that cortical neuron diversity is generated by mechanisms operating beyond gene transcription, with Ire1α-safeguarded proteostasis serving as an essential regulator of brain development.
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  • 文章类型: Journal Article
    射血分数保留的心力衰竭(HFpEF)是一种临床综合征,其特征是由左心室舒张功能障碍和充盈压升高引起的肺和全身充血。目前,然而,没有证据表明HFpEF的有效药物治疗.在这项研究中,我们旨在通过建立高脂饮食(HFD)L-NAME诱导的小鼠模型,研究龙胆总黄吨酮(TXG)对HFpEF的治疗作用。超声心动图用于评估TXG对HFpEF小鼠心功能的影响。苏木精和伊红染色,小麦胚芽凝集素染色,用Masson三色染色观察TXG治疗后的组织病理学变化。结果表明,TXG通过降低心肌肥厚相关基因的表达减轻HFpEF,纤维化和凋亡。此外,TXG通过抑制凋亡相关蛋白的表达改善心肌细胞凋亡。机制研究表明,TXG可以激活需要肌醇的酶1α(IRE1α)/X-box结合蛋白1(Xbp1s)信号通路,但是使用IRE1α抑制剂STF083010或siRNA-IRE1α敲低IRE1α会损害TXG改善HFpEF模型中心脏重塑的能力。总之,TXG减轻心肌肥厚,通过激活IRE1α/Xbp1s信号通路,提示其对HFpEF患者的潜在有益作用。
    Heart failure with preserved ejection fraction (HFpEF) is a clinical syndrome characterized by pulmonary and systemic congestion resulting from left ventricular diastolic dysfunction and increased filling pressure. Currently, however, there is no evidence on effective pharmacotherapy for HFpEF. In this study, we aimed to investigate the therapeutic effect of total xanthones extracted from Gentianella acuta (TXG) on HFpEF by establishing an high-fat diet (HFD) + L-NAME-induced mouse model. Echocardiography was employed to assess the impact of TXG on the cardiac function in HFpEF mice. Haematoxylin and eosin staining, wheat germ agglutinin staining, and Masson\'s trichrome staining were utilized to observe the histopathological changes following TXG treatment. The results demonstrated that TXG alleviated HFpEF by reducing the expressions of genes associated with myocardial hypertrophy, fibrosis and apoptosis. Furthermore, TXG improved cardiomyocyte apoptosis by inhibiting the expression of apoptosis-related proteins. Mechanistic investigations revealed that TXG could activate the inositol-requiring enzyme 1α (IRE1α)/X-box-binding protein 1 (Xbp1s) signalling pathway, but the knockdown of IRE1α using the IRE1α inhibitor STF083010 or siRNA-IRE1α impaired the ability of TXG to ameliorate cardiac remodelling in HFpEF models. In conclusion, TXG alleviates myocardial hypertrophy, fibrosis and apoptosis through the activation of the IRE1α/Xbp1s signalling pathway, suggesting its potential beneficial effects on HFpEF patients.
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  • 文章类型: Journal Article
    猪繁殖与呼吸综合征病毒(PRRSV),动脉炎病毒科的一员,对全球养猪业的持续威胁,导致猪生殖衰竭和呼吸道疾病。在这项研究中,我们探讨了组蛋白脱乙酰酶(HDAC2)在PRRSV感染过程中的作用。我们的发现揭示HDAC2表达在PRRSV感染后下调。值得注意的是,通过特异性小干扰RNA抑制HDAC2活性导致病毒产量增加,而过表达HDAC2通过增强IFN调节的抗病毒分子的表达有效抑制PRRSV复制。此外,我们确定该病毒的非结构蛋白11(nsp11)是降低HDAC2水平的关键因素。PRRSVnsp11的诱变分析表明,其对HDAC2抗病毒活性的拮抗作用取决于其核酸内切酶活性。总之,我们的研究发现了PRRSV采用的一种新的免疫逃避机制,为该病毒的发病机制提供重要见解,并指导针对PRRSV感染的创新预防策略的开发。
    Porcine reproductive and respiratory syndrome virus (PRRSV), a member of the Arteriviridae family, represents a persistent menace to the global pig industry, causing reproductive failure and respiratory disease in pigs. In this study, we delved into the role of histone deacetylases (HDAC2) during PRRSV infection. Our findings revealed that HDAC2 expression is downregulated upon PRRSV infection. Notably, suppressing HDAC2 activity through specific small interfering RNA led to an increase in virus production, whereas overexpressing HDAC2 effectively inhibited PRRSV replication by boosting the expression of IFN-regulated antiviral molecules. Furthermore, we identified the virus\'s nonstructural protein 11 (nsp11) as a key player in reducing HDAC2 levels. Mutagenic analyses of PRRSV nsp11 revealed that its antagonistic effect on the antiviral activity of HDAC2 is dependent on its endonuclease activity. In summary, our research uncovered a novel immune evasion mechanism employed by PRRSV, providing crucial insights into the pathogenesis of this virus and guiding the development of innovative prevention strategies against PRRSV infection.
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  • 文章类型: Journal Article
    目前,全世界有超过5500万人患有痴呆症,和阿尔茨海默病和相关痴呆(ADRD)占所有这些病例的近60-70%。阿尔茨海默病(AD)病理和海马和大脑皮层进行性神经变性的扩散与AD患者的认知功能下降密切相关;ADRD因果关系的分子基础尚不清楚。对死后AD大脑和AD动物模型的研究表明,内质网(ER)应激升高可能通过改变与学习和记忆相关的大脑区域的神经细胞稳态而在ADRD病理学中起作用。研究ER应激相关的神经细胞反应及其对神经细胞稳态和神经发生的影响。我们使用Thapsigargin(TG)对ER压力挑战进行建模,Sarco/内质网Ca2ATPase(SERCA)的特异性抑制剂,来自墨西哥裔美国人家庭研究(MAFS)的两名个体的诱导多能干细胞(iPSC)衍生的神经干细胞(NSC)。对对照和ER应激挑战的NSC的高含量筛选和转录组分析表明,NSC的ER应激反应导致NSC自我更新的显着下降,凋亡和细胞氧化应激的增加。共有2300个基因显着差异表达(DE)(适度t统计FDR校正的p值≤0.05,绝对变化倍数≥2.0)。DE基因的途径富集和基因网络分析表明,所有三个未折叠蛋白反应(UPR)途径,蛋白激酶RNA样ER激酶(PERK),激活转录因子-6(ATF-6),和需要肌醇的酶-1(IRE1),显著激活并协同调节NSC对ER应激的转录反应。我们的结果表明IRE1/X-box结合蛋白1(XBP1)介导E2F转录因子1(E2F1)基因的转录调控,及其下游靶标在ER应激攻击的NSCs中诱导G1/S期细胞周期停滞中起主导作用。ER应激攻击的NSC还显示了C/EBP同源蛋白(CHOP)介导的细胞凋亡的激活以及突触可塑性和神经递质稳态相关基因的失调。总的来说,我们的结果表明,内质网应激相关的NSC自我更新的衰减,细胞凋亡增加,突触可塑性和神经递质稳态失调可能在ADRD的因果关系中起作用。
    Currently, more than 55 million people around the world suffer from dementia, and Alzheimer\'s Disease and Related Dementias (ADRD) accounts for nearly 60-70% of all those cases. The spread of Alzheimer\'s Disease (AD) pathology and progressive neurodegeneration in the hippocampus and cerebral cortex is strongly correlated with cognitive decline in AD patients; however, the molecular underpinning of ADRD\'s causality is still unclear. Studies of postmortem AD brains and animal models of AD suggest that elevated endoplasmic reticulum (ER) stress may have a role in ADRD pathology through altered neurocellular homeostasis in brain regions associated with learning and memory. To study the ER stress-associated neurocellular response and its effects on neurocellular homeostasis and neurogenesis, we modeled an ER stress challenge using thapsigargin (TG), a specific inhibitor of sarco/endoplasmic reticulum Ca2+ ATPase (SERCA), in the induced pluripotent stem cell (iPSC)-derived neural stem cells (NSCs) of two individuals from our Mexican American Family Study (MAFS). High-content screening and transcriptomic analysis of the control and ER stress-challenged NSCs showed that the NSCs\' ER stress response resulted in a significant decline in NSC self-renewal and an increase in apoptosis and cellular oxidative stress. A total of 2300 genes were significantly (moderated t statistics FDR-corrected p-value ≤ 0.05 and fold change absolute ≥ 2.0) differentially expressed (DE). The pathway enrichment and gene network analysis of DE genes suggests that all three unfolded protein response (UPR) pathways, protein kinase RNA-like ER kinase (PERK), activating transcription factor-6 (ATF-6), and inositol-requiring enzyme-1 (IRE1), were significantly activated and cooperatively regulated the NSCs\' transcriptional response to ER stress. Our results show that IRE1/X-box binding protein 1 (XBP1) mediated transcriptional regulation of the E2F transcription factor 1 (E2F1) gene, and its downstream targets have a dominant role in inducing G1/S-phase cell cycle arrest in ER stress-challenged NSCs. The ER stress-challenged NSCs also showed the activation of C/EBP homologous protein (CHOP)-mediated apoptosis and the dysregulation of synaptic plasticity and neurotransmitter homeostasis-associated genes. Overall, our results suggest that the ER stress-associated attenuation of NSC self-renewal, increased apoptosis, and dysregulated synaptic plasticity and neurotransmitter homeostasis plausibly play a role in the causation of ADRD.
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  • 文章类型: Journal Article
    背景:软骨-毛发发育不全(CHH,OMIM#250250)是一种罕见的常染色体隐性遗传疾病,其中包括软骨-毛发发育不全-无张力发育不良(CHH-AD)谱系障碍。CHH-AD是由线粒体RNA加工核糖核酸内切酶(RMRP)基因的RNA成分中的纯合或复合杂合突变引起的。
    方法:这里,我们报告2例韩国儿童CHH-AD。
    方法:在第一种情况下,该患者有干phy端发育不良,但无毛发减少,通过全外显子组测序(WES)诊断,只表现出骨骼发育不良,缺乏骨骼外表现,如头发发育不全和免疫缺陷。在第二种情况下,病人有骨骼发育不良,毛发发育不全,和免疫缺陷,由WES鉴定。
    方法:第二例是韩国报道的首例CHH。两种情况下的患者都接受了定期的免疫和肺功能检查。
    结果:我们的案例表明,出生时身材矮小的儿童,有或没有骨外表现,应包括CHH-AD作为鉴别诊断。
    临床怀疑是最重要的,诊断CHH-AD应考虑RMRP测序。
    BACKGROUND: Cartilage-hair hypoplasia (CHH, OMIM # 250250) is a rare autosomal recessive disorder, which includes cartilage-hair hypoplasia-anauxetic dysplasia (CHH-AD) spectrum disorders. CHH-AD is caused by homozygous or compound heterozygous mutations in the RNA component of the mitochondrial RNA-processing Endoribonuclease (RMRP) gene.
    METHODS: Here, we report 2 cases of Korean children with CHH-AD.
    METHODS: In the first case, the patient had metaphyseal dysplasia without hypotrichosis, diagnosed by whole exome sequencing (WES), and exhibited only skeletal dysplasia and lacked extraskeletal manifestations, such as hair hypoplasia and immunodeficiency. In the second case, the patient had skeletal dysplasia, hair hypoplasia, and immunodeficiency, which were identified by WES.
    METHODS: The second case is the first CHH reported in Korea. The patients in both cases received regular immune and lung function checkups.
    RESULTS: Our cases suggest that children with extremely short stature from birth, with or without extraskeletal manifestations, should include CHH-AD as a differential diagnosis.
    UNASSIGNED: Clinical suspicion is the most important and RMRP sequencing should be considered for the diagnosis of CHH-AD.
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  • 文章类型: Journal Article
    足细胞内质网(ER)中的蛋白质错误折叠有助于肾小球疾病的发病机理。蛋白质错误折叠激活未折叠的蛋白质反应(UPR),补偿性信令网络。我们讨论了UPR和UPR换能器的作用,需要肌醇的酶1α(IRE1α),在链脲佐菌素诱导的小鼠糖尿病肾病中。糖尿病在对照小鼠中引起进行性蛋白尿,在足细胞特异性IRE1α敲除(KO)小鼠中加剧。与糖尿病对照组相比,糖尿病IRE1αKO小鼠足细胞数量和突触素减少。仅在糖尿病IRE1αKO小鼠中改变了肾小球超微结构;主要变化包括足细胞足突和肾小球基底膜的加宽。UPR和自噬的激活在糖尿病控制中是明显的,但不是糖尿病IRE1αKO小鼠。对JuCKD-Glom数据库中的人肾小球基因表达的分析证明了与ER相关的基因的诱导,UPR和自噬在糖尿病肾病中的作用.因此,足细胞特异性IRE1α缺失的小鼠表现出更严重的糖尿病肾病和肾小球UPR和自噬的减弱,暗示IRE1α的保护作用。这些结果与人类糖尿病性肾病的数据一致,并突出了治疗靶向这些途径的潜力。
    Protein misfolding in the endoplasmic reticulum (ER) of podocytes contributes to the pathogenesis of glomerular diseases. Protein misfolding activates the unfolded protein response (UPR), a compensatory signaling network. We address the role of the UPR and the UPR transducer, inositol-requiring enzyme 1α (IRE1α), in streptozotocin-induced diabetic nephropathy in mice. Diabetes caused progressive albuminuria in control mice that was exacerbated in podocyte-specific IRE1α knockout (KO) mice. Compared to diabetic controls, diabetic IRE1α KO mice showed reductions in podocyte number and synaptopodin. Glomerular ultrastructure was altered only in diabetic IRE1α KO mice; the major changes included widening of podocyte foot processes and glomerular basement membrane. Activation of the UPR and autophagy was evident in diabetic control, but not diabetic IRE1α KO mice. Analysis of human glomerular gene expression in the JuCKD-Glom database demonstrated induction of genes associated with the ER, UPR and autophagy in diabetic nephropathy. Thus, mice with podocyte-specific deletion of IRE1α demonstrate more severe diabetic nephropathy and attenuation of the glomerular UPR and autophagy, implying a protective effect of IRE1α. These results are consistent with data in human diabetic nephropathy and highlight the potential for therapeutically targeting these pathways.
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  • 文章类型: Journal Article
    假体周围骨质溶解和随后的无菌性松动是全关节置换术后失败的主要原因。磨损颗粒诱导的成骨损伤被认为是骨溶解发展的重要因素。内质网(ER)应激是一个关键的潜在机制。因此,寻找能够调节成骨细胞内质网应激的潜在治疗靶点和药物对于预防无菌性松动至关重要.山奈酚(KAE),一种天然的黄酮醇化合物,在各种疾病中显示出有希望的骨保护作用和抗ER应激特性。然而,KAE对磨损颗粒诱导的ER应力介导的成骨损伤的影响尚不清楚。在这项研究中,我们观察到KAE通过改善小鼠颅骨模型中的成骨作用,有效缓解TiAl6V4颗粒(TiPs)诱导的骨溶解.此外,我们证明了KAE可以减弱暴露于TiPs的成骨细胞中ER应激介导的细胞凋亡,在体外和体内。机械上,我们的结果表明,KAE通过上调IRE1α/XBP1s通路,同时部分抑制IRE1α调节的RIDD和JNK激活,减轻了ER应激介导的细胞凋亡.总的来说,我们的研究结果表明,KAE是一种治疗磨损颗粒诱导的骨质溶解的前瞻性治疗剂,并强调IRE1α/XBP1s通路是预防无菌性松动的潜在治疗靶点。
    Periprosthetic osteolysis and subsequent aseptic loosening are the primary causes of failure following total joint arthroplasty. Wear particle-induced osteogenic impairment is recognized as an important contributing factor in the development of osteolysis, with endoplasmic reticulum (ER) stress emerging as a pivotal underlying mechanism. Hence, searching for potential therapeutic targets and agents capable of modulating ER stress in osteoblasts is crucial for preventing aseptic loosening. Kaempferol (KAE), a natural flavonol compound, has shown promising osteoprotective effects and anti-ER stress properties in diverse diseases. However, the influence of KAE on ER stress-mediated osteogenic impairment induced by wear particles remains unclear. In this study, we observed that KAE effectively relieved TiAl6V4 particles-induced osteolysis by improving osteogenesis in a mouse calvarial model. Furthermore, we demonstrated that KAE could attenuate ER stress-mediated apoptosis in osteoblasts exposed to TiAl6V4 particles, both in vitro and in vivo. Mechanistically, our results revealed that KAE mitigated ER stress-mediated apoptosis by upregulating the IRE1α-XBP1s pathway while concurrently partially inhibiting the IRE1α-regulated RIDD and JNK activation. Collectively, our findings suggest that KAE is a prospective therapeutic agent for treating wear particle-induced osteolysis and highlight the IRE1α-XBP1s pathway as a potential therapeutic target for preventing aseptic loosening.
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