ADEPT

ADEPT
  • 文章类型: Journal Article
    蛋白质工程可用于定制用于医疗目的的酶,包括抗体导向的酶前药治疗(ADEPT),它可以作为癌症常规化疗的肿瘤靶向替代方案。在ADEPT,抗体作为载体,将药物激活酶选择性地递送到肿瘤部位。谷胱甘肽转移酶(GSTs)是一个家族的天然存在的解毒酶,其中一些在肿瘤中过表达的发现已被用于开发GST激活的前药。前药Telcyta被GSTP1-1激活,GSTP1-1是癌细胞中最常见的GST,这意味着过表达GSTP1-1的肿瘤应该特别容易受到Telcyta的影响。临床试验中已注意到有希望的抗肿瘤活性,但是野生型酶对Telcyta的活性不大,进一步的功能改进将增强其对ADEPT的有用性。我们利用蛋白质工程构建人GSTP1-1基因变体,以寻找具有Telcyta增强活性的酶。与野生型GSTP1-1相比,变体Y109H显示出高2.9倍的酶活性。然而,催化效能的增加伴随着Y109H酶热稳定性的降低,在50℃下8分钟内失去99%的活性通过同时引入四个额外的突变而恢复了热稳定性,而没有丧失Telcyta的增强活性。突变Q85R被鉴定为恢复热稳定性的重要贡献者。这些结果代表了Telcyta功能性ADEPT应用的第一步。
    Protein engineering can be used to tailor enzymes for medical purposes, including antibody-directed enzyme prodrug therapy (ADEPT), which can act as a tumor-targeted alternative to conventional chemotherapy for cancer. In ADEPT, the antibody serves as a vector, delivering a drug-activating enzyme selectively to the tumor site. Glutathione transferases (GSTs) are a family of naturally occurring detoxication enzymes, and the finding that some of them are overexpressed in tumors has been exploited to develop GST-activated prodrugs. The prodrug Telcyta is activated by GST P1-1, which is the GST most commonly elevated in cancer cells, implying that tumors overexpressing GST P1-1 should be particularly vulnerable to Telcyta. Promising antitumor activity has been noted in clinical trials, but the wildtype enzyme has modest activity with Telcyta, and further functional improvement would enhance its usefulness for ADEPT. We utilized protein engineering to construct human GST P1-1 gene variants in the search for enzymes with enhanced activity with Telcyta. The variant Y109H displayed a 2.9-fold higher enzyme activity compared to the wild-type GST P1-1. However, increased catalytic potency was accompanied by decreased thermal stability of the Y109H enzyme, losing 99% of its activity in 8 min at 50 °C. Thermal stability was restored by four additional mutations simultaneously introduced without loss of the enhanced activity with Telcyta. The mutation Q85R was identified as an important contributor to the regained thermostability. These results represent a first step towards a functional ADEPT application for Telcyta.
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  • 文章类型: Journal Article
    当前的初级保健认知评估工具要么是粗糙的,要么是耗时的工具,只有在建立良好的情况下才能检测到认知障碍。这导致对内存服务的不必要或延迟引用,到那时,疾病可能已经发展到更严重的阶段。由于COVID-19大流行,一些记忆服务已经适应了新的环境,转向远程评估患者,以满足服务用户的需求。然而,远程认知评估的使用一直不一致,在临床实践中,对这种变化的结果几乎没有评估。新兴的研究强调了计算机化的认知测试,如综合认知评估(ICA),作为临床实践中采用的主要候选人。无论是在大流行期间,还是在后COVID-19时代,作为医疗保健创新的一部分,这都是如此。
    为了应对这一挑战并开发现实世界的证据基础,启动了加速痴呆途径技术(ADEPT)研究,以支持采用ICA作为一种廉价的筛查工具来检测认知障碍并提高痴呆护理途径的效率。
    招募了99名55-90岁的患者,这些患者已被全科医生(GP)转诊到记忆诊所。参与者在家中或诊所完成了ICA,以及病史和可用性问卷。将GP转诊和ICA结果与在记忆诊所获得的专家诊断进行比较。参与者可以选择进行重新测试访问,再次有机会远程或面对面进行ICA测试。
    该研究的主要结果比较了全科医生转诊与专家诊断的轻度认知障碍(MCI)和痴呆。在全科医生提到记忆诊所的那些人中,78%是必要的转介,约22%的不必要推荐,或由于患有MCI/痴呆以外的疾病而应转诊至其他服务的患者。在同一人群中,ICA能够正确识别约90%的患者的认知障碍,大约9%的患者是假阴性。从不必要的GP推荐的子集,ICA将约72%的人归类为没有认知障碍,这表明,如果使用ICA,这些不必要的转介可能不会发生。ICA对痴呆症的敏感性为93%,对MCI的敏感性为83%,对两种疾病的特异性均为80%。此外,ICA的测试-重测预测一致性为87.5%。
    这项研究的结果证明了ICA作为筛选工具的潜力,可以用来支持初级保健机构的准确转诊,以及在记忆诊所和二级保健中进行的工作。ICA检测MCI认知障碍的敏感性和特异性超过了现有文献报道的整体护理标准。
    UNASSIGNED: Current primary care cognitive assessment tools are either crude or time-consuming instruments that can only detect cognitive impairment when it is well established. This leads to unnecessary or late referrals to memory services, by which time the disease may have already progressed into more severe stages. Due to the COVID-19 pandemic, some memory services have adapted to the new environment by shifting to remote assessments of patients to meet service user demand. However, the use of remote cognitive assessments has been inconsistent, and there has been little evaluation of the outcome of such a change in clinical practice. Emerging research has highlighted computerized cognitive tests, such as the Integrated Cognitive Assessment (ICA), as the leading candidates for adoption in clinical practice. This is true both during the pandemic and in the post-COVID-19 era as part of healthcare innovation.
    UNASSIGNED: The Accelerating Dementias Pathways Technologies (ADePT) Study was initiated in order to address this challenge and develop a real-world evidence basis to support the adoption of ICA as an inexpensive screening tool for the detection of cognitive impairment and improving the efficiency of the dementia care pathway.
    UNASSIGNED: Ninety-nine patients aged 55-90 who have been referred to a memory clinic by a general practitioner (GP) were recruited. Participants completed the ICA either at home or in the clinic along with medical history and usability questionnaires. The GP referral and ICA outcome were compared with the specialist diagnosis obtained at the memory clinic.Participants were given the option to carry out a retest visit where they were again given the chance to take the ICA test either remotely or face-to-face.
    UNASSIGNED: The primary outcome of the study compared GP referral with specialist diagnosis of mild cognitive impairment (MCI) and dementia. Of those the GP referred to memory clinics, 78% were necessary referrals, with ~22% unnecessary referrals, or patients who should have been referred to other services as they had disorders other than MCI/dementia. In the same population the ICA was able to correctly identify cognitive impairment in ~90% of patients, with approximately 9% of patients being false negatives. From the subset of unnecessary GP referrals, the ICA classified ~72% of those as not having cognitive impairment, suggesting that these unnecessary referrals may not have been made if the ICA was in use. ICA demonstrated a sensitivity of 93% for dementia and 83% for MCI, with a specificity of 80% for both conditions in detecting cognitive impairment. Additionally, the test-retest prediction agreement for the ICA was 87.5%.
    UNASSIGNED: The results from this study demonstrate the potential of the ICA as a screening tool, which can be used to support accurate referrals from primary care settings, along with the work conducted in memory clinics and in secondary care. The ICA\'s sensitivity and specificity in detecting cognitive impairment in MCI surpassed the overall standard of care reported in existing literature.
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  • 文章类型: Journal Article
    胞嘧啶脱氨酶(CDA)是一种非哺乳动物酶,具有将前药5-氟胞嘧啶(5-FC)介导成毒性药物5-氟尿嘧啶(5-FU)的强大活性,作为癌症传统化疗和放疗的替代方法。这种酶已经从各种微生物中经常被报道和表征。5-FC-CDA的治疗策略包括施用CDA,随后注射前药5-FC以产生细胞毒性5-FU。CDA-5-FC的抗增殖活性来自尿嘧啶途径在肿瘤细胞中的活性高于正常细胞。治疗药物5-FU的主要挑战是半衰期短,缺乏选择性和耐药性的出现,与其他化疗一致。所以,通过CDA将5-FU介导到肿瘤细胞是将药物引导到肿瘤细胞的最可行的方法之一,降低其毒性作用并改善其药代动力学特性。然而,催化效率,稳定性,CDA-5-FC的抗原性和靶向性,是限制这种方法临床应用的主要挑战。因此,探索来自各种微生物的CDA的生化特性,以及通过抗体导向的酶前药疗法(ADEPT)和基因导向的前药疗法(GDEPT)将CDA-5-FC系统定位到肿瘤细胞的方法是本综述的目标.最后,提高治疗效果的观点,描述了CDA-5-FC系统的靶向性。
    Cytosine deaminase (CDA) is a non-mammalian enzyme with powerful activity in mediating the prodrug 5-fluorcytosine (5-FC) into toxic drug 5-fluorouracil (5-FU), as an alternative directed approach for the traditional chemotherapies and radiotherapies of cancer. This enzyme has been frequently reported and characterized from various microorganisms. The therapeutic strategy of 5-FC-CDA involves the administration of CDA followed by the prodrug 5-FC injection to generate cytotoxic 5-FU. The antiproliferative activity of CDA-5-FC elaborates from the higher activity of uracil pathway in tumor cells than normal ones. The main challenge of the therapeutic drug 5-FU are the short half-life, lack of selectivity and emergence of the drug resistance, consistently to the other chemotherapies. So, mediating the 5-FU to the tumor cells by CDA is one of the most feasible approaches to direct the drug to the tumor cells, reducing its toxic effects and improving their pharmacokinetic properties. Nevertheless, the catalytic efficiency, stability, antigenicity and targetability of CDA-5-FC, are the major challenges that limit the clinical application of this approach. Thus, exploring the biochemical properties of CDA from various microorganisms, as well as the approaches for localizing the system of CDA-5-FC to the tumor cells via the antibody directed enzyme prodrug therapy (ADEPT) and gene directed prodrug therapy (GDEPT) were the objectives of this review. Finally, the perspectives for increasing the therapeutic efficacy, and targetability of the CDA-5-FC system were described.
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  • 文章类型: Journal Article
    现代工业机器人系统是高度互联的。它们在分布式环境中运行,并与传感器通信,计算机视觉系统,机电设备,和计算组件。在基本层面上,在这种分布式系统中,各方之间的通信和协调具有离散事件行为的特征。后者主要归因于网络上通信的细节,which,在条款中,便于异步编程和显式事件处理。此外,在概念层面上,事件是实现反应性和协调性的重要组成部分。事件驱动架构在构建基于发布-订阅中间件的松耦合系统方面表现出其有效性,无论是通用的或面向机器人的。尽管中间件取得了所有的进步,工业机器人仍然难以在分布式系统的背景下编程,这在很大程度上是由于原生机器人平台的限制。本文提出了一种基于AdeptV+平台的工业机器人柔性事件控制架构。该架构基于机器人控制器提供TCP/IP服务器和机器人技能的集合,和部署到专用计算设备的高级控制模块。控制模块具有与机器人控制器的双向通信以及与外部系统的发布/订阅消息传送。它使用pyadept以异步样式编程,基于Python协程的Python库,AsyncIO事件循环和ZeroMQ中间件。所提出的解决方案有助于将Adept机器人集成到分布式环境中,并使用基于事件的逻辑构建更灵活的机器人解决方案。
    Modern industrial robotic systems are highly interconnected. They operate in a distributed environment and communicate with sensors, computer vision systems, mechatronic devices, and computational components. On the fundamental level, communication and coordination between all parties in such distributed system are characterized by discrete event behavior. The latter is largely attributed to the specifics of communication over the network, which, in terms, facilitates asynchronous programming and explicit event handling. In addition, on the conceptual level, events are an important building block for realizing reactivity and coordination. Event-driven architecture has manifested its effectiveness for building loosely-coupled systems based on publish-subscribe middleware, either general-purpose or robotic-oriented. Despite all the advances in middleware, industrial robots remain difficult to program in context of distributed systems, to a large extent due to the limitation of the native robot platforms. This paper proposes an architecture for flexible event-based control of industrial robots based on the Adept V+ platform. The architecture is based on the robot controller providing a TCP/IP server and a collection of robot skills, and a high-level control module deployed to a dedicated computing device. The control module possesses bidirectional communication with the robot controller and publish/subscribe messaging with external systems. It is programmed in asynchronous style using pyadept, a Python library based on Python coroutines, AsyncIO event loop and ZeroMQ middleware. The proposed solution facilitates integration of Adept robots into distributed environments and building more flexible robotic solutions with event-based logic.
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  • 文章类型: Journal Article
    许多癌症疾病,例如,前列腺癌和肺癌,发展非常缓慢。常见的化疗药物如长春新碱,长春碱和紫杉醇靶向处于其增殖状态的癌细胞。在缓慢发展的癌症疾病中,只有一小部分恶性细胞处于增殖状态,因此,这些药物也会对快速增殖的良性组织产生伴随的损害。许多毒素具有杀死处于所有状态的细胞的能力,而不管它们是良性的还是恶性的。如果这些毒素可以选择性地靶向肿瘤,则它们只能用作化学治疗剂。这类毒素的例子是mertansine,Calicheamicins和thapsigargins,它们都在低微摩尔或纳摩尔浓度下杀死细胞。能够将这些毒素靶向癌组织的高级前药概念包括抗体导向的酶前药治疗(ADEPT),基因导向酶前药治疗(GDEPT),凝集素定向酶激活前药治疗(LEAPT),和抗体-药物偶联疗法(ADC),这将在本审查中讨论。该综述还包括蛋白酶靶向嵌合体(PROTAC)的最新实例,用于敲低肿瘤发展所必需的受体。此外,将提到依赖于具有独特底物特异性的肿瘤过表达的酶的毒素靶向。
    Many cancer diseases, e.g., prostate cancer and lung cancer, develop very slowly. Common chemotherapeutics like vincristine, vinblastine and taxol target cancer cells in their proliferating states. In slowly developing cancer diseases only a minor part of the malignant cells will be in a proliferative state, and consequently these drugs will exert a concomitant damage on rapidly proliferating benign tissue as well. A number of toxins possess an ability to kill cells in all states independently of whether they are benign or malignant. Such toxins can only be used as chemotherapeutics if they can be targeted selectively against the tumors. Examples of such toxins are mertansine, calicheamicins and thapsigargins, which all kill cells at low micromolar or nanomolar concentrations. Advanced prodrug concepts enabling targeting of these toxins to cancer tissue comprise antibody-directed enzyme prodrug therapy (ADEPT), gene-directed enzyme prodrug therapy (GDEPT), lectin-directed enzyme-activated prodrug therapy (LEAPT), and antibody-drug conjugated therapy (ADC), which will be discussed in the present review. The review also includes recent examples of protease-targeting chimera (PROTAC) for knockdown of receptors essential for development of tumors. In addition, targeting of toxins relying on tumor-overexpressed enzymes with unique substrate specificity will be mentioned.
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  • 文章类型: Journal Article
    背景:直到最近,患有相同类型和阶段癌症的患者都接受相同的治疗。它已经建立,然而,患有相同疾病的个体对相同治疗的反应不同。Further,每个肿瘤都经历基因变化,导致癌症生长和转移。在一个人的癌症中发生的变化可能不会发生在具有相同癌症类型的其他人中。这些差异也导致对治疗的不同反应。精准医学,也被称为个性化医疗,是一种策略,允许根据患者的基因组成选择治疗方法。在癌症的情况下,这种治疗是为考虑到个体肿瘤中可能发生的遗传变化而定制的。精准医学,因此,可以根据靶向治疗涉及的靶标来定义。
    方法:在电子数据库中使用关键词“癌症靶向治疗,从2010年至2019年6月,进行了个性化医学和癌症联合治疗,包括论文。
    结果:报道了靶向癌症治疗策略的最新进展。具体来说,关于两种靶向治疗;第一,基于免疫的治疗,如使用免疫检查点抑制剂(ICIs),免疫细胞因子,肿瘤靶向超抗原(TTS)和配体靶向治疗剂(LTT)。第二种策略涉及基于酶/小分子的疗法,例如使用蛋白水解靶向嵌合体(PROTAC),抗体-药物缀合物(ADC)和抗体导向的酶前药治疗(ADEPT)。还研究了药物对受到攻击的基因或蛋白质的精确靶向,换句话说,如何使用精准医学来定制治疗方法。
    结论:癌症和其他疾病的常规治疗模式集中于对所有患者进行单一类型的干预。然而,肿瘤学的大量文献支持精准医学治疗方法以及联合治疗的治疗益处.
    BACKGROUND: Until recently, patients who have the same type and stage of cancer all receive the same treatment. It has been established, however, that individuals with the same disease respond differently to the same therapy. Further, each tumor undergoes genetic changes that cause cancer to grow and metastasize. The changes that occur in one person\'s cancer may not occur in others with the same cancer type. These differences also lead to different responses to treatment. Precision medicine, also known as personalized medicine, is a strategy that allows the selection of a treatment based on the patient\'s genetic makeup. In the case of cancer, the treatment is tailored to take into account the genetic changes that may occur in an individual\'s tumor. Precision medicine, therefore, could be defined in terms of the targets involved in targeted therapy.
    METHODS: A literature search in electronic data bases using keywords \"cancer targeted therapy, personalized medicine and cancer combination therapies\" was conducted to include papers from 2010 to June 2019.
    RESULTS: Recent developments in strategies of targeted cancer therapy were reported. Specifically, on the two types of targeted therapy; first, immune-based therapy such as the use of immune checkpoint inhibitors (ICIs), immune cytokines, tumor-targeted superantigens (TTS) and ligand targeted therapeutics (LTTs). The second strategy deals with enzyme/small molecules-based therapies, such as the use of a proteolysis targeting chimera (PROTAC), antibody-drug conjugates (ADC) and antibody-directed enzyme prodrug therapy (ADEPT). The precise targeting of the drug to the gene or protein under attack was also investigated, in other words, how precision medicine can be used to tailor treatments.
    CONCLUSIONS: The conventional therapeutic paradigm for cancer and other diseases has focused on a single type of intervention for all patients. However, a large literature in oncology supports the therapeutic benefits of a precision medicine approach to therapy as well as combination therapies.
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  • 文章类型: Journal Article
    Quantifying gait parameters and ambulatory monitoring of changes in these parameters have become increasingly important in epidemiological and clinical studies. Using high-density accelerometry measurements, we propose adaptive empirical pattern transformation (ADEPT), a fast, scalable, and accurate method for segmentation of individual walking strides. ADEPT computes the covariance between a scaled and translated pattern function and the data, an idea similar to the continuous wavelet transform. The difference is that ADEPT uses a data-based pattern function, allows multiple pattern functions, can use other distances instead of the covariance, and the pattern function is not required to satisfy the wavelet admissibility condition. Compared to many existing approaches, ADEPT is designed to work with data collected at various body locations and is invariant to the direction of accelerometer axes relative to body orientation. The method is applied to and validated on accelerometry data collected during a $450$-m outdoor walk of $32$ study participants wearing accelerometers on the wrist, hip, and both ankles. Additionally, all scripts and data needed to reproduce presented results are included in supplementary material available at Biostatistics online.
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  • 文章类型: Journal Article
    与选择性剖宫产相比,紧急剖宫产术后并发症更多。Seprafilm和Adept是常用的粘连减少装置,已在腹部或骨盆手术中应用了很长时间。本研究重点比较两组急诊剖宫产术后短期结局。我们进行了一项回顾性研究,包括2014年8月至2017年11月在麦凯纪念医院接受同一位外科医生紧急剖腹产的所有患者,我们分析了总体病例,并对感染或肮脏/感染伤口的病例进行了亚组分析手术部位感染率(SSI)。绷带症,迟发性肠胃排气通道,和住院时间。两组的SSI发生率相似,绷带症,和住院时间。然而,Seprafilm与48h内肛门延迟通过的风险更高(OR:2.67,95%CI=2.16-7.64,p=0.001)。它还需要更少的时间来恢复消化系统,并且术后需要更少的医疗管理。如果伤口被污染或弄脏/感染,熟练的用户的比率也显着降低(10.3%与32%,p=0.048,OR:4.12,CI=1.09-15.61)。
    Emergency cesarean sections are associated with more postoperative complications than with elective cesarean sections. Seprafilm and Adept are commonly used adhesion reduction devices and have been applied in abdominal or pelvic surgery for a long time. This study focuses on comparing the short-term postoperative outcomes of emergency cesarean sections between two groups. We performed a retrospective study that included all patients who received emergency caesarean sections from the same surgeon at MacKay Memorial Hospital between August 2014 and November 2017, We analyzed the overall cases and conducted a subgroup analysis of cases with contaminated or dirty/infected wounds in regard to the rates of surgical-site infection (SSI), bandemia, delayed flatus passage, and length of hospital stay. The two groups were similar with respect to the rates of SSI, bandemia, and length of hospital stay. However, Seprafilm was associated with higher risk of delayed flatus passage over 48 h (OR: 2.67, 95% CI = 2.16-7.64, p = 0.001). It also needs less time for recovery of the digestive system and less medical management postoperatively. In cases of contaminated or dirty/infected wounds, Adept user also had significantly lower rates (10.3% vs. 32%, p = 0.048, OR: 4.12, CI = 1.09-15.61) of postcesarean metritis.
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  • 文章类型: Journal Article
    简介:前药已用于通过靶向癌细胞过表达且在正常组织中不存在的独特异常标志物来提高癌症治疗的选择性和功效。在这种情况下,不同的策略被采用,每年都在开发新的策略。涵盖的领域:在这篇评论中,提供了前药在靶向癌症治疗中的潜在用途的综合观点.被动和主动策略讨论了每个人的优点,并提供了一些成功的例子。以及几种前药的临床状况。其中,抗体-药物缀合物(ADC)是最常用的。然而,几个缺点,包括有限的前药摄取,不良的药代动力学,免疫原性问题,在选择性靶向和基因表达方面的困难,和优化的旁观者效应限制了它们的临床应用。专家观点:尽管不同的公司和研究小组做出了努力,几个缺点,例如缺乏相关的体内模型,人类新陈代谢的复杂性,和经济限制,阻碍了靶向癌症治疗的新药研发。因此,我们相信前药与纳米技术和其他新开发的方法相结合,如适体共轭纳米材料,是有效的策略。
    Introduction: Prodrugs have been used to improve the selectivity and efficacy of cancer therapy by targeting unique abnormal markers that are overexpressed by cancer cells and are absent in normal tissues. In this context, different strategies have been exploited and new ones are being developed each year. Areas covered: In this review, an integrated view of the potential use of prodrugs in targeted cancer therapy is provided. Passive and active strategies are discussed in light of the advantages of each one and some successful examples are provided, as well as the clinical status of several prodrugs. Among them, antibody-drug conjugates (ADCs) are the most commonly used. However, several drawbacks, including limited prodrug uptake, poor pharmacokinetics, immunogenicity problems, difficulties in selective targeting and gene expression, and optimized bystander effects limit their clinical applications. Expert opinion: Despite the efforts of different companies and research groups, several drawbacks, such as the lack of relevant in vivo models, complexity of the human metabolism, and economic limitations, have hampered the development of new prodrugs for targeted cancer therapy. As a result, we believe that the combination of prodrugs with cancer nanotechnology and other newly developed approaches, such as aptamer-conjugated nanomaterials, are efficient strategies.
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  • 文章类型: Journal Article
    Glucarpidase, also known as carboxypeptidase G2, is a Food and Drug Administration-approved enzyme used in targeted cancer strategies such as antibody-directed enzyme prodrug therapy (ADEPT). It is also used in drug detoxification when cancer patients have excessive levels of the anti-cancer agent methotrexate. The application of glucarpidase is limited by its potential immunogenicity and limited catalytic efficiency. To overcome these pitfalls, mutagenesis was applied to the glucarpidase gene of Pseudomonas sp. strain RS-16 to isolate three novels \"biobetter\" variants with higher specific enzyme activity. DNA sequence analysis of the genes for the variants showed that each had a single point mutation, resulting in the amino acid substitutions: I100 T, G123S and T239 A. Km, Vmax and Kcat measurements confirmed that each variant had increased catalytic efficiency relative to wild type glucarpidase. Additionally, circular dichroism studies indicated that they had a higher alpha-helical content relative to the wild type enzyme. However, three different software packages predicted that they had reduced protein stability, which is consistent with having higher activities as a tradeoff. The novel glucarpidase variants presented in this work could pave the way for more efficient drug detoxification and might allow dose escalation during chemotherapy. They also have the potential to increase the efficiency of ADEPT and to reduce the number of treatment cycles, thereby reducing the risk that patients will develop antibodies to glucarpidase.
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