ABF

ABF
  • 文章类型: Journal Article
    气候变化是我们星球上所有生命的全球关切,包括人类和植物。植物的生长和发育受到非生物胁迫的显著影响,包括不利的温度,水供应不足或过量,营养缺乏,和盐度。生物钟是植物中许多发育和代谢过程的主要调节因子。为了通过生物信息学分析识别新的时钟相关基因和输出,我们揭示了CIRCADIAN时钟相关1(CCA1)和晚期下胚轴(LHY)在调节多种非生物应激反应中起着至关重要的作用,并靶向脱落酸响应元素-结合因子3(ABF3),植物激素脱落酸(ABA)信号通路中的关键转录因子。具体来说,我们发现CCA1和LHY在diel条件下调节ABF3的表达,以及盐度下的种子萌发。相反,ABF3控制核心时钟基因的表达,并以应激反应的方式协调昼夜节律。ABF3通过与CCA1和LHY的启动子结合将应激信号传递到中心振荡器。总的来说,我们的研究揭示了ABF3和CCA1/LHY之间的相互调节以及生物钟和非生物胁迫之间相互作用的分子机制.这一发现可能有助于开发分子和遗传解决方案,使植物在面对气候变化时能够生存和茁壮成长。
    Climate change is a global concern for all life on our planet, including humans and plants. Plants\' growth and development are significantly affected by abiotic stresses, including adverse temperature, inadequate or excess water availability, nutrient deficiency, and salinity. The circadian clock is a master regulator of numerous developmental and metabolic processes in plants. In an effort to identify new clock-related genes and outputs through bioinformatic analysis, we have revealed that CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) and LATE ELONGATED HYPOCOTYL (LHY) play a crucial role in regulating a wide range of abiotic stress responses and target ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR3 (ABF3), a key transcription factor in the plant hormone Abscisic acid (ABA)-signaling pathway. Specifically, we found that CCA1 and LHY regulate the expression of ABF3 under diel conditions, as well as seed germination under salinity. Conversely, ABF3 controls the expression of core clock genes and orchestrates the circadian period in a stress-responsive manner. ABF3 delivers the stress signal to the central oscillator by binding to the promoter of CCA1 and LHY. Overall, our study uncovers the reciprocal regulation between ABF3 and CCA1/LHY and molecular mechanisms underlying the interaction between the circadian clock and abiotic stress. This finding may aid in developing molecular and genetic solutions for plants to survive and thrive in the face of climate change.
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  • 文章类型: Journal Article
    •LSTV的主要前入路差异包括血管(主动脉分叉/静脉合流),肌肉(腰大肌)和骨解剖(椎间切线/耻骨联合),与非LSTV相比。•LSTV前路手术偏差增加,但并发症不明显。•进入L45时的血管意识将存在头部更多的ABF和ICC,并伴有L5,而进入更深的L56水平将存在更多的ABF和ICC。
    •Key anterior approaches differences in LSTV include vascular (aortic bifurcation/iliocaval confluence), muscular (psoas) and osseus anatomy (inter-crestal tangent/pubic symphysis), when compared to non-LSTV.•There are increased surgical deviations but not significantly greater complications for anterior approaches in LSTV.•Vascular awareness while accessing L45 will be in the presence of a more cephalad ABF and ICC with sacralized L5, and access to the deeper L56 level will be in the presence of a more caudal ABF and ICC in lumbarized S1.
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  • 文章类型: Case Reports
    胸血管内主动脉修复术(TEVAR)后的主动脉食管和主动脉支气管瘘是罕见且危及生命的疾病。对于此类病例的最佳治疗管理,文献中没有明确的指导。此病例表明,经文化指导的抗生素治疗和联合血管内管理保守治疗,延迟同时发生主动脉食管和主动脉支气管瘘。
    Aortoesophageal and aortobronchial fistulae after thoracic endovascular aortic repair (TEVAR) are rare and life-threatening conditions. No clear guidance exists in the literature for the optimal therapeutic management of such cases. This case demonstrates a delayed simultaneous aortoesophageal and aortobronchial fistulae treated conservatively with culture-guided antibiotic therapy and combined endovascular management.
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  • 文章类型: Journal Article
    The core abscisic acid (ABA) signaling pathway consists of receptors, phosphatases, kinases and transcription factors, among them ABA INSENSITIVE 5 (ABI5) and ABRE BINDING FACTORs/ABRE-BINDING PROTEINs (ABFs/AREBs), which belong to the BASIC LEUCINE ZIPPER (bZIP) family and control expression of stress-responsive genes. ABI5 is mostly active in seeds and prevents germination and post-germinative growth under unfavorable conditions. The activity of ABI5 is controlled at transcriptional and protein levels, depending on numerous regulators, including components of other phytohormonal pathways. ABFs/AREBs act redundantly in regulating genes that control physiological processes in response to stress during vegetative growth. In this review, we focus on recent reports regarding ABI5 and ABFs/AREBs functions during abiotic stress responses, which seem to be partially overlapping and not restricted to one developmental stage in Arabidopsis and other species. Moreover, we point out that ABI5 and ABFs/AREBs play a crucial role in the core ABA pathway\'s feedback regulation. In this review, we also discuss increased stress tolerance of transgenic plants overexpressing genes encoding ABA-dependent bZIPs. Taken together, we show that ABI5 and ABFs/AREBs are crucial ABA-dependent transcription factors regulating processes essential for plant adaptation to stress at different developmental stages.
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  • 文章类型: Journal Article
    在这项研究中,1000升/天容量一次性现场废水处理系统运行了一年多,作为目前不丹城市使用的常规现场处理的试点替代方案。上流厌氧污泥层(UASB)用于黑水处理(代替“化粪池,然后是厌氧生物滤池(ABF)(代替浸泡坑)),用于处理灰水和UASB废水的混合物。切碎的废塑料瓶用作ABF中的新型生物滤池介质。在一年的手术中,中试系统从ABF生产出平均BOD528mg/L的最终处理废水,COD38mg/L,TSS85mg/L和5个对数单位的大肠杆菌。这些废水达到了不丹国家废水排放限值的四分之三,但在一年的手术中未能达到大肠杆菌标准。Further,工艺优化可以实现更显著的大肠杆菌去除。经济分析表明,50多个用户的替代废水处理系统的总单位成本(资本和运营支出)在0.27-0.37美元/人/月之间,与目前主要的现场系统的0.29-0.42美元/人/月相比,即,“化粪池”。这项试点研究,因此,表明该污水处理系统采用切碎的废塑料生物滤池介质具有很高的潜力,以取代目前的常规处理,即,“化粪池”,往往是超负荷的中水和排放的废水,不符合国家标准。
    In this study, a 1000 L/d capacity one-off on-site wastewater treatment system was operated for over a year as a pilot alternative to the conventional on-site treatment as currently used in urban Bhutan. An up-flow anaerobic sludge blanket (UASB) was used for blackwater treatment (to replace \"septic tank followed by an anaerobic biofilter (ABF) (to replace soak pits) for the treatment of a mixture of greywater and UASB effluent. Shredded waste plastic bottles were used as the novel biofilter media in the ABF. During a yearlong operation, the pilot system produced a final treated effluent from ABF with average BOD5 28 mg/L, COD 38 mg/L, TSS 85 mg/L and 5 log units of Escherichia coli. These effluents met three out of four of the national effluent discharge limits of Bhutan, but unsuccessful to meet the Escherichia coli standard over a yearlong operation. Further, process optimisation may enable more significant Escherichia coli removal. An economic analysis indicates that the total unit cost (capital and operating expenditures) of this alternative wastewater treatment system for more than 50 users range between USD 0.27-0.37/person/month comparable to USD 0.29-0.42/person/month for the current predominant on-site system, i.e., \"septic tanks\". This pilot study, therefore, indicates that this wastewater treatment system using shredded waste plastic biofilter media has high potential to replace the current conventional treatment, i.e., \"septic tanks\", which are often overloaded with greywater and discharging effluents which does not meet the national standards.
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  • 文章类型: Journal Article
    碱性亮氨酸拉链(bZIP)转录因子(TF)亚组A的大多数成员在发芽和/或营养胁迫反应中的脱落酸(ABA)信号传导中起着重要作用。在多种植物物种中,一名成员,ABA不敏感5(ABI5),是一种主要的TF,可响应ABA促进种子成熟并阻止早期播种生长。其他成员,称为ABRE结合因子(ABF),ABRE结合蛋白(AREB),或D3蛋白结合因子(DPBF),被认为是营养生长过程中应激反应的主要参与者。对拟南芥ABI5,ABF1和ABF3的蛋白水解调节的研究表明,在蛋白酶体抑制剂MG132的存在下,蛋白质具有中等的降解速率并积累。外源ABA减缓了它们的降解,称为KEEPONGOING(KEG)的泛素E3连接酶对它们的降解很重要。然而,有报道的亚组A成员之间的降解存在一些差异。保守的C-末端序列(称为C4区)增强ABI5的降解,但稳定ABF1和ABF3。为了更好地理解ABI5/ABFs的蛋白水解调节并确定营养性ABFs和ABI5之间是否存在差异,我们研究了另外一个家族成员的降解,ABF2,并将其在体外降解与ABI5的降解进行了比较。如先前对于ABI5、ABF1和ABF3所见,表位标记的组成型表达的ABF2在用环己酰亚胺处理的幼苗中降解,并且在用蛋白酶体抑制剂MG132处理后稳定。当幼苗用ABA处理时,标记的ABF2蛋白积累,但是它的mRNA水平没有增加,表明蛋白质在ABA的存在下是稳定的。ABF2还是E3连接酶KEG的体外泛素化底物,重组ABF2在小桶裂解物中稳定。如先前对于ABF1和ABF3所观察到的,具有C4缺失的ABF2在体外比全长ABF2更快地降解,表明保守的C4区有助于其稳定性。与ABF2相反,与以前发表的作品一致,与全长ABI5相比,具有C末端缺失(包括类似C4缺失)的ABI5在体外稳定。与同等水平的全长ABF1相比,ABF1C4缺失蛋白的体内表达似乎具有降低的活性。另外的A组家族成员通过MG132和ABA显示出相似的蛋白水解调节。总之,这些结果以及其他有关ABI5调节的工作表明,营养性ABFs具有与ABI5不完全共有的蛋白水解调节机制.
    Most members of basic leucine zipper (bZIP) transcription factor (TF) subgroup A play important roles as positive effectors in abscisic acid (ABA) signaling during germination and/or in vegetative stress responses. In multiple plant species, one member, ABA insensitive 5 (ABI5), is a major TF that promotes seed maturation and blocks early seeding growth in response to ABA. Other members, referred to as either ABRE-binding factors (ABFs), ABRE-binding proteins (AREBs), or D3 protein-binding factors (DPBFs), are implicated as major players in stress responses during vegetative growth. Studies on the proteolytic regulation of ABI5, ABF1, and ABF3 in Arabidopsis thaliana have shown that the proteins have moderate degradation rates and accumulate in the presence of the proteasome inhibitor MG132. Exogenous ABA slows their degradation and the ubiquitin E3 ligase called KEEP ON GOING (KEG) is important for their degradation. However, there are some reported differences in degradation among subgroup A members. The conserved C-terminal sequences (referred to as the C4 region) enhance degradation of ABI5 but stabilize ABF1 and ABF3. To better understand the proteolytic regulation of the ABI5/ABFs and determine whether there are differences between vegetative ABFs and ABI5, we studied the degradation of an additional family member, ABF2, and compared its in vitro degradation to that of ABI5. As previously seen for ABI5, ABF1, and ABF3, epitope-tagged constitutively expressed ABF2 degrades in seedlings treated with cycloheximide and is stabilized following treatment with the proteasome inhibitor MG132. Tagged ABF2 protein accumulates when seedlings are treated with ABA, but its mRNA levels do not increase, suggesting that the protein is stabilized in the presence of ABA. ABF2 is also an in vitro ubiquitination substrate of the E3 ligase KEG and recombinant ABF2 is stable in keg lysates. ABF2 with a C4 deletion degrades more quickly in vitro than full-length ABF2, as previously observed for ABF1 and ABF3, suggesting that the conserved C4 region contributes to its stability. In contrast to ABF2 and consistent with previously published work, ABI5 with C terminal deletions including an analogous C4 deletion is stabilized in vitro compared to full length ABI5. In vivo expression of an ABF1 C4 deletion protein appears to have reduced activity compared to equivalent levels of full length ABF1. Additional group A family members show similar proteolytic regulation by MG132 and ABA. Altogether, these results together with other work on ABI5 regulation suggest that the vegetative ABFs share proteolytic regulatory mechanisms that are not completely shared with ABI5.
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  • 文章类型: Journal Article
    Multi-modal image fusion techniques aid the medical experts in better disease diagnosis by providing adequate complementary information from multi-modal medical images. These techniques enhance the effectiveness of medical disorder analysis and classification of results. This study aims at proposing a novel technique using deep learning for the fusion of multi-modal medical images. The modified 2D Adaptive Bilateral Filters (M-2D-ABF) algorithm is used in the image pre-processing for filtering various types of noises. The contrast and brightness are improved by applying the proposed Energy-based CLAHE algorithm in order to preserve the high energy regions of the multimodal images. Images from two different modalities are first registered using mutual information and then registered images are fused to form a single image. In the proposed fusion scheme, images are fused using Siamese Neural Network and Entropy (SNNE)-based image fusion algorithm. Particularly, the medical images are fused by using Siamese convolutional neural network structure and the entropy of the images. Fusion is done on the basis of score of the SoftMax layer and the entropy of the image. The fused image is segmented using Fast Fuzzy C Means Clustering Algorithm (FFCMC) and Otsu Thresholding. Finally, various features are extracted from the segmented regions. Using the extracted features, classification is done using Logistic Regression classifier. Evaluation is performed using publicly available benchmark dataset. Experimental results using various pairs of multi-modal medical images reveal that the proposed multi-modal image fusion and classification techniques compete the existing state-of-the-art techniques reported in the literature.
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  • 文章类型: Journal Article
    Abscisic acid-responsive element (ABRE)-binding factors (ABFs) are important transcription factors involved in various physiological processes in plants. Stomata are micro channels for water and gas exchange of plants. Previous researches have demonstrated that ABFs can modulate the stomatal development in some plants. However, little is known about stomata-related functions of ABFs in carrots. In our study, DcABF3, a gene encoding for ABF transcription factor, was isolated from carrot. The open reading frame of DcABF3 was 1329 bp, encoding 442 amino acids. Expression profiles of DcABF3 indicated that DcABF3 can respond to drought, salt or ABA treatment in carrots. Overexpressing DcABF3 in Arabidopsis led to the increase of stomatal density which caused severe water loss. Expression assay indicated that overexpression of DcABF3 caused high expression of stomatal development-related transcription factor genes, SPCH, FAMA, MUTE and SCRMs. Increased antioxidant enzyme activities and higher expression levels of stress-related genes were also found in transgenic lines after water deficit treatment. Changes in expression of ABA synthesis-related genes and AtABIs indicated the potential role of DcABF3 in ABA signaling pathway. Under the treatment of exogenous ABA, DcABF3-overexpression Arabidopsis seedlings exhibited increased root length and germination rate. Our findings demonstrated that heterologous overexpression of DcABF3 positively affected stomatal development and also reduced ABA sensitivity in transgenic Arabidopsis.
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  • 文章类型: Journal Article
    荧光探针的适当组合使得能够同时可视化活拟南芥中的call体沉积和质膜,可用于植物中乳头形成的细胞生物学研究。真菌感染部位的局部call骨沉积是乳头形成的中心部分,它在宿主质膜和细胞壁之间产生屏障,并在防止真菌菌丝渗透到宿主细胞中起重要作用。使用甲壳素诱导的call体沉积作为模型系统,我们研究了同时可视化拟南芥子叶中call质沉积和质膜动力学的合适条件。我们发现,用于call石染色的苯胺蓝荧光染料(ABF)选择性地干扰FM染料用于膜可视化,具体取决于后者化合物的结构,并且这些荧光染料和染色条件的适当组合是成功的活细胞成像的关键。建立的条件使几丁质诱导的call体沉积和宿主膜系统的活细胞成像成为可能。建立的系统/条件也可用于对其他应激/发育相关过程中局部call体沉积的细胞生物学研究。发现FM染料结构的细微差异会影响与另一种荧光染料的相互作用,ABF,还将为使用多种荧光染料进行活细胞成像的研究提供有用的建议。
    UNASSIGNED: The appropriate combination of fluorescent probes enabled the simultaneous visualization of callose deposition and plasma membrane in living Arabidopsis and can be useful for the cell biological study of papilla formation in plants. Localized callose deposition at the site of fungal infection is a central part of papilla formation, which creates a barrier between the host plasma membrane and the cell wall and plays an important role in preventing the penetration of fungal hyphae into the host cells. Using chitin-induced callose deposition as a model system, we examined suitable conditions for the simultaneous visualization of callose deposition and plasma membrane dynamics in living Arabidopsis cotyledons. We found that aniline blue fluorochrome (ABF) for callose staining selectively interferes with FM dyes for membrane visualization depending on the structure of the latter compounds and the proper combination of these fluorescent dyes and staining conditions is a key for successful live-cell imaging. The established conditions enabled the live-cell imaging of chitin-induced callose deposition and host membrane systems. The established system/conditions would also be useful for the cell biological studies on the localized callose deposition in other stress/development-associated processes. The finding that the slight difference in the structure of FM dyes affects the interaction with another fluorescent dye, ABF, would also give useful suggestions for the studies where multiple fluorescent dyes are utilized for live-cell imaging.
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  • 文章类型: Journal Article
    Abscisic acid responsive element binding factors (ABFs) play crucial roles in plant responses to abiotic stress. However, little is known about the roles of ABFs in alpine subnival plants, which can survive under extreme environmental conditions. Here, we cloned and characterized an ABF1 homolog, CbABF1, from the alpine subnival plant Chorispora bungeana. Expression of CbABF1 was induced by cold, drought, and abscisic acid. Subcellular localization analysis revealed that CbABF1 was located in the nucleus. Further, CbABF1 had transactivation activity, which was dependent on the N-terminal region containing 89 residues. A Snf1-related protein kinase, CbSnRK2.6, interacted with CbABF1 in yeast two-hybrid analysis and bimolecular fluorescence complementation assays. Transient expression assay revealed that CbSnRK2.6 enhanced the transactivation of CbABF1 on ABRE cis-element. We further found that heterologous expression of CbABF1 in tobacco improved plant tolerance to freezing and drought stress, in which the survival rates of the transgenic plants increased around 40 and 60%, respectively, compared with wild-type plants. Moreover, the transgenic plants accumulated less reactive oxygen species, accompanied by high activities of antioxidant enzymes and elevated expression of stress-responsive genes. Our results thus suggest that CbABF1 is a transcription factor that plays an important role in cold and drought tolerance and is a candidate gene in molecular breeding of stress-tolerant crops.
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