oyster

牡蛎
  • 文章类型: Journal Article
    这项研究探讨了多元素结合化学计量学来区分牡蛎(Crassostreaariakensi)的地理起源的功效。我们从中国东南沿海四个地区的166个样品中确定了52个元素。51个元素的区域差异显著(P<0.05),而主成分分析(PCA)没有提供明确的区域划分。基于线性判别分析(LDA)建立的训练模型(n=117),偏最小二乘判别分析(PLS-DA),和随机森林(RF)一致实现了100%的预测精度。从LDA得出的最终模型(n=166)的交叉验证精度,PLS-DA,RF是100%,100%,99.4%,分别。即使将模型简化为8个元素(Zn,Al,K,Cd,Cu,Rb,B,和Ag),保持了较高的预测和交叉验证准确性,强调元素分析的鲁棒性和算法灵活性,以准确识别牡蛎的地理来源。
    This study explored the efficacy of multi-elements combined with chemometrics to discriminate the geographical origins of oysters (Crassostrea ariakensi). We determined 52 elements in 166 samples from four regions along the southeast coast of China. Significant regional variations of 51 elements were revealed (P < 0.05), while the principal component analysis (PCA) provided no clear regional delineations. The training models (n = 117) established on linear discriminant analysis (LDA), partial least square discriminant analysis (PLS-DA), and random forest (RF) uniformly achieved 100% predictive accuracy. The cross-validation accuracies of the final models (n = 166) derived from LDA, PLS-DA, and RF were 100%, 100%, and 99.4%, respectively. Even with the models simplified to 8 elements (Zn, Al, K, Cd, Cu, Rb, B, and Ag), high predictive and cross-validation accuracies were maintained, underscoring the robustness and algorithm flexibility of elemental profiling for accurately identifying the geographical origins of oysters.
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  • 文章类型: Journal Article
    油炸牡蛎是东亚流行的水产食品,但是热加工过程中的营养损失成为一个重要的问题。这项研究的目的是研究不同油炸技术的影响,包括油炸(DF),空气油炸(AF),和真空油炸(VF),关于营养,牡蛎的质地和风味特征。VF方法表现出优异的有益性质和风味保留,与DF和AF方法相比,蛋白质和脂质氧化减少。此外,牡蛎的蛋白质组学分析试图解释控制关键差异蛋白影响的分子机制。20种主要差异蛋白,包括肌动蛋白-2蛋白,色氨酸2,3-双加氧酶和1-alph,与牡蛎蛋白氧化有关的鉴定,注释和分析,阐明其影响机制。这项研究为油炸技术和牡蛎生物化学之间的复杂相互作用提供了更深入的理解,这为提高海鲜行业的食品质量提供了有价值的启示。
    Fried oyster is a popular aquatic food product in East Asia, but nutrient loss during thermal processing become a significant concern. The goal of this research was to examine the impact of distinct frying techniques, including deep frying (DF), air frying (AF), and vacuum frying (VF), on the nutritional, textural and flavor characteristics of oysters. The VF method demonstrated superior retention of beneficial properties and flavor, and reduced protein and lipid oxidation compared to the DF and AF methods. Furthermore, proteomic analysis of oysters was attempted to explain the molecular mechanisms governing the influence of key differential proteins. 20 major differential proteins, including actin-2 protein, tryptophan 2,3-dioxygenase and 1-alph, involved in oyster protein oxidation were identified, annotated and analyzed to elucidate their influence mechanisms. This research provides a deeper understanding of intricate interactions between frying techniques and oyster biochemistry, which offers valuable implications for enhancing food quality in seafood industry.
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  • 文章类型: Journal Article
    细胞色素P450(CYP)基因超家族在各种生理过程中起着重要作用,产生不同的化合物,如激素,脂肪酸,和生物分子。然而,很少有信息知道它们在太平洋牡蛎(Crassostreagigas)性腺发育过程中的作用。在这项研究中,共鉴定出116个CgCYP(Crassostreagigas细胞色素P450)基因,并首次分析了它们的表达模式。这些CgCYP基因的相对分子量范围为63.52至113.41kDa,编码氨基酸的长度为103到993。并鉴定了这些CgCYP基因的总共26个顺式作用元件。GO和KEGG富集剖析显示一些CgCYP基因对男性和女性性激素的代谢是必需的。此外,表达分析显示69个CgCYP基因在性腺发育早期和三倍体不育个体中过表达。更重要的是,CgCYP1,CgCYP15,CgCYP34,CgCYP46,CgCYP69,CgCYP87,CgCYP88和CgCYP103的表达水平在女性性腺中明显更高,表明它们在女性性腺发育中的重要作用。这项研究的结果将为更好地了解CgCYP基因在太平洋牡蛎性腺发育中的作用提供参考。
    The cytochrome P450 (CYP) gene superfamily plays a significant role in various physiological processes, producing different compounds such as hormones, fatty acids, and biomolecules. However, little information is known their roles during gonad development in Pacific oyster (Crassostrea gigas). In this study, total of 116 CgCYP (Crassostrea gigas cytochrome P450) genes were identified and their expression pattern was analyzed for the first time. The relative molecular weights of these CgCYP genes ranged from 63.52 to 113.41 kDa, and the length of encoded amino acids ranged from 103 to 993. And total 26 cis-acting elements of these CgCYP genes were identified. GO and KEGG enrichment analysis showed some CgCYP genes are essential for the metabolism of male and female sex hormones. Additionally, expression anslysis showed 69 CgCYP genes were over-expressed in early gonad development and triploid infertile individuals. More importantly, expression levels of CgCYP1, CgCYP15, CgCYP34, CgCYP46, CgCYP69, CgCYP87, CgCYP88, and CgCYP103, were found to be significantly higher in female gonad, suggesting their important roles in female gonad development. The results of this study will provide a better understanding of the CgCYP genes in the gonad development of Pacific oyster.
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  • 文章类型: Journal Article
    这项研究暴露了成年悉尼岩牡蛎,要么是性别,要么两者兼而有之,合成雌激素17α-炔雌醇(EE2),50ng/L,持续21天,然后检查未暴露幼虫的发育终点和转录组反应。在来自双亲暴露(FTMT)的幼虫中,在受精后1天(dpf)观察到降低的存活率。2dpf的活动幼虫来自母体(FTMC)的数量较少,父系(FCMT),和FTMT风险敞口。此外,FTMC和FTMT亲本的幼虫在7dpf时的壳长减少。RNA测序(RNA-seq)揭示了来自FTMT亲本的1-dpf幼虫中的1064个差异表达基因(DEG),虽然在FTMC和FCMT父母的幼虫中检测到较少的DEG,分别为258和7。GO和KEGG分析显示DEGs在不同的术语和途径中显著富集,治疗组之间重叠有限。IPA结果表明调节能量产生的途径可能受到抑制,幼虫发育,转录,FTMT幼虫中活性氧的解毒作用。qRT-PCR验证证实了参与这些途径和相关生物过程的选定DEG的显着下调,如在RNA-seq数据集中鉴定的。总的来说,我们的结果表明,EE2的代际毒性主要是通过母体传播,双亲暴露放大了这些影响。
    This study exposed adult Sydney rock oysters, of either sex or both, to the synthetic estrogen 17α-ethinylestradiol (EE2) at 50 ng/L for 21 days, followed by an examination of developmental endpoints and transcriptomic responses in unexposed larvae. Reduced survival was observed at 1 day post-fertilisation (dpf) in larvae from bi-parental exposure (FTMT). Motile larvae at 2 dpf were fewer from maternal (FTMC), paternal (FCMT), and FTMT exposures. Additionally, shell length at 7 dpf decreased in larvae from FTMC and FTMT parents. RNA sequencing (RNA-seq) revealed 1064 differentially expressed genes (DEGs) in 1-dpf larvae from FTMT parents, while fewer DEGs were detected in larvae from FTMC and FCMT parents, with 258 and 7, respectively. GO and KEGG analyses showed significant enrichment of DEGs in diverse terms and pathways, with limited overlap among treatment groups. IPA results indicated potential inhibition of pathways regulating energy production, larval development, transcription, and detoxification of reactive oxygen species in FTMT larvae. qRT-PCR validation confirmed significant downregulation of selected DEGs involved in these pathways and relevant biological processes, as identified in the RNA-seq dataset. Overall, our results suggest that the intergenerational toxicity of EE2 is primarily maternally transmitted, with bi-parental exposure amplifying these effects.
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  • 文章类型: Journal Article
    氯氰菊酯(CP)是一种积累在牡蛎中的神经毒性杀虫剂,最常消费的海鲜之一,对人体构成潜在的健康风险。我们设计了一种胃肠道示踪方法,可以准确定量食糜的推进,并进一步建立了小鼠体内消化模型,以探索CP在原料消化中的行为。蒸,蒸烤牡蛎。结果表明,CP在牡蛎中的生物富集可能伴随着CP的生物转化。热处理降低了牡蛎中的CP含量及其生物可及性。小肠是CP消化和吸收的主要部位。CP的顺式异构体最终可能以较高的比例在体内积累,并进一步成为毒性作用的主要构型。一起来看,该研究有助于对水产品中CP的膳食暴露进行风险评估。
    Cypermethrin (CP) is a neurotoxic insecticide found accumulated in oysters, one of the most commonly consumed seafoods, posing potential health risks to the human body. We designed a gastrointestinal tracing method allowing for accurate quantification of the propulsion of chyme and further established the mouse in vivo digestion model to explore the behavior of CP in the digestion of raw, steamed, and roasted oysters. The results showed that bioaccumulation of CP in oysters may be accompanied by the biotransformation of CP. Thermal processing decreased both the CP content in oysters and its bioaccessibility. The small intestine is the main site for CP digestion and absorption. The cis-isomers of CP might finally accumulate in the body at a higher ratio and further become the predominant configuration for toxic effects. Taken together, the study contributes to the risk assessment of the dietary exposure of CP from aquatic products.
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  • 文章类型: Journal Article
    骨质疏松症是一个重大的公共卫生问题,迫切需要安全有效的治疗干预措施。牡蛎的壳形成过程与哺乳动物的骨形成过程相似,和牡蛎提取物已被证明发挥骨保护作用。牡蛎地幔是调节壳形成的最关键的器官,其中外泌体起着重要作用。然而,牡蛎套来源的外泌体(OME)对哺乳动物骨质疏松症的影响及其潜在机制尚不清楚。发现本文研究的OME携带丰富的成骨货物。它们还可以在不利的胃肠道条件下存活并在口服后积聚在骨骼中。此外,它们促进成骨细胞分化,同时抑制破骨细胞分化。进一步的机制检查表明,OMEs可能通过激活成骨细胞中的PI3K/Akt/β-catenin途径来促进成骨活性,并通过抑制破骨细胞中的NF-κB途径来减弱破骨细胞活性。OME的这些有利的促成骨作用在大鼠股骨缺损模型中也得到证实。重要的是,口服OMEs可有效减轻卵巢切除引起的骨质疏松小鼠的骨丢失并改善骨微结构,并展示了出色的生物安全性。从我们的数据中得出的机械见解支持OME具有针对骨质疏松症的有希望的治疗潜力。
    Osteoporosis is a major public health problem with an urgent need for safe and effective therapeutic interventions. The process of shell formation in oysters is similar to that of bone formation in mammals, and oyster extracts have been proven to exert osteoprotective effects. Oyster mantle is the most crucial organ regulating shell formation, in which exosomes play an important role. However, the effects of oyster mantle-derived exosomes (OMEs) on mammalian osteoporosis and the underlying mechanisms remain unknown. The OMEs investigated herein was found to carry abundant osteogenic cargos. They could also survive hostile gastrointestinal conditions and accumulate in the bones following oral administration. Moreover, they promoted osteoblastic differentiation and inhibited osteoclastic differentiation simultaneously. Further mechanistic examination revealed that OMEs likely promoted osteogenic activity by activating PI3K/Akt/β-catenin pathway in osteoblasts and blunted osteoclastic activity by inhibiting NF-κB pathway in osteoclasts. These favorable pro-osteogenic effects of OMEs were also corroborated in a rat femur defect model. Importantly, oral administration of OMEs effectively attenuated bone loss and improved the bone microstructure in ovariectomy-induced osteoporotic mice, and demonstrating excellent biosafety. The mechanistic insights from our data support that OMEs possess promising therapeutic potential against osteoporosis.
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  • 文章类型: Journal Article
    软体动物科Ostreidae,通常被称为牡蛎,由于其经济和生态重要性,是重要的软体动物群体。近年来,已生成了大量的Ostreidae物种基因组数据,并可在公共领域获得。然而,目前仍然缺乏一个高效的数据库平台,以全面的工具来存储和分发这些数据。在这项研究中,我们开发了一个牡蛎基因组数据库(OysterDB)来巩固牡蛎基因组数据。该数据库包括8个牡蛎基因组和208,923个蛋白质编码基因注释。生物信息学工具,如BLAST和JBrowse,集成到数据库中,为同源序列搜索提供用户友好的平台,基因组的可视化,并筛选候选基因信息。此外,OysterDB将不断更新不断增长的牡蛎基因组资源,并促进未来牡蛎的比较和功能基因组分析的研究(http://oysterdb.com。cn/)。
    The molluscan family Ostreidae, commonly known as oysters, is an important molluscan group due to its economic and ecological importance. In recent years, an abundance of genomic data of Ostreidae species has been generated and available in public domain. However, there is still a lack of a high-efficiency database platform to store and distribute these data with comprehensive tools. In this study, we developed an oyster genome database (OysterDB) to consolidate oyster genomic data. This database includes eight oyster genomes and 208,923 protein-coding gene annotations. Bioinformatic tools, such as BLAST and JBrowse, are integrated into the database to provide a user-friendly platform for homologous sequence searching, visualization of genomes, and screen for candidate gene information. Moreover, OysterDB will be continuously updated with ever-growing oyster genomic resources and facilitate future studies for comparative and functional genomic analysis of oysters ( http://oysterdb.com.cn/ ).
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  • 文章类型: Journal Article
    热风干燥(HAD)是一种广泛用于牡蛎的方法,它引起最直观的变化,颜色变化。然而,颜色变化的机制尚不清楚。这项研究表明,牡蛎在HAD过程中发生褐变。比色参数L*降低,而a*和b*增加,所有这些都被一阶颜色动力学模型很好地描述。机械上,HDA过程诱导酚的氧化褐变和美拉德反应产物(5-羟甲基糠醛和亲水吡咯)的生成。同时,HAD过程引起脂质氧化,导致磷脂酰乙醇胺的还原和反应性羰基化合物(醛和α-二羰基化合物)的生成。此外,疏水吡咯的积累,脂质诱导的美拉德样反应产物,被观察到。这些结果表明,除了酚类氧化,糖和氨基酸介导的非酶褐变反应,脂质介导的美拉德样反应在HAD过程中牡蛎变黑中起重要作用。
    Hot air drying (HAD) is an extensive method used on oysters and it causes the most intuitive change, a color change. However, the mechanism of color change remains unclear. This study showed that oysters underwent browning during the HAD process. The colorimetric parameter L* decreased while a* and b* increased, all of which were well described by the first-order color kinetic model. Mechanistically, the HDA process induced the oxidative browning of phenols and the generation of Maillard reaction products (5-hydroxymethylfurfural and hydrophilic pyrrole). Meanwhile, the HAD process caused lipid oxidation, leading to the reduction of phosphatidylethanolamine and the generation of reactive carbonyl compounds (aldehydes and α-dicarbonyl compounds). Moreover, the accumulation of hydrophobic pyrroles, a lipid-induced Maillard-like reaction product, was observed. These results suggest that, in addition to phenolic oxidation, sugar- and amino acid-mediated non-enzymatic browning reactions, lipid-mediated Maillard-like reactions play important roles in oyster darkening during the HAD process.
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  • 文章类型: Journal Article
    地理来源的可追溯性对于保证质量至关重要,安全,和保护牡蛎品牌。然而,当前可追溯性的结果缺乏可信度,因为它们不能充分解释模型的预测。因此,我们进行了一项研究,以评估利用可解释的机器学习结合矿质元素分析的功效。研究结果表明,有18个元素具有确定区域方向的能力。同时,由于牡蛎所含的必需和有毒元素的地区差异,个人应更加关注与牡蛎消费相关的潜在风险。光梯度增压机(LightGBM)模型表现出难以区分的性能,实现完美的准确性,精度,召回,F1评分和AUC,值为96.77%,96.43%,98.53%,分别为97.32%和0.998。Shapley加法扩张(SHAP)方法用于评估LightGBM模型的输出,揭示不同省份牡蛎特征相互作用的差异。具体来说,Na的特征,Zn,V,Mg,和K对模型的预测过程有显著影响。与现有研究一致,使用可解释的机器学习技术可以深入了解重要产品属性和相关地理信息之间的复杂联系。
    The traceability of geographic origin is essential for guaranteeing the quality, safety, and protection of oyster brands. However, the current outcomes of traceability lack credibility as they do not adequately explain the model\'s predictions. Consequently, we conducted a study to evaluate the efficacy of utilizing explainable machine learning combined with mineral elements analysis. The study findings revealed that 18 elements have the ability to determine regional orientation. Simultaneously, individuals should pay closer attention to the potential risks associated with oyster consumption due to the regional differences in essential and toxic elements they contain. Light gradient boosting machine (LightGBM) model exhibited indistinguishable performance, achieving flawless accuracy, precision, recall, F1 score and AUC, with values of 96.77%, 96.43%, 98.53%, 97.32% and 0.998, respectively. The SHapley Additive exPlanations (SHAP) method was used to evaluate the output of the LightGBM model, revealing differences in feature interactions among oysters from different provinces. Specifically, the features Na, Zn, V, Mg, and K were found to have a significant impact on the predictive process of the model. Consistent with existing research, the use of explainable machine learning techniques can provide insights into the complex connections between important product attributes and relevant geographical information.
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  • 文章类型: Journal Article
    越来越多的证据表明,严重的急性呼吸道综合症冠状病毒2(SARS-CoV-2)污染了海洋环境,并在滤食贝类中生物积累。先前的研究表明,太平洋牡蛎组织可以生物积累SARS-CoV-2,牡蛎热休克蛋白70(oHSP70)可能作为主要附着受体结合SARS-CoV-2的重组刺突蛋白S1亚基(rS1)。然而,关于rS1和oHSP70之间相互作用的详细信息仍然未知.在这项研究中,我们通过基于表面等离子体共振(SPR)的Biacore证实了重组oHSP70(roHSP70)对rS1(KD=20.4nM)的亲和力与rACE2对rS1(KD=16.7nM)的受体结合亲和力相当,并通过酶联免疫吸附测定(ELISA)进一步验证.三个截短的蛋白质(roHSP70-N/C/M)和五个突变的蛋白质(p。I229del,p.D457del,p.V491_K495del,p.K556I,和p.ΣroHSP70)根据分子对接结果构建。所有三种截短的蛋白质对rS1的亲和力明显低于全长roHSP70,表明roHSP70的所有三个片段都参与与rS1的结合。Further,SPR和ELISA的结果表明,所有5种突变蛋白对rS1的亲和力均明显低于roHSP70,这表明这些位点的氨基酸与rS1的结合有关。本研究为SARS-CoV-2在牡蛎组织中的生物富集或以roHSP70为捕获单位选择性富集病毒颗粒进行检测提供了初步的理论依据。
    There is growing evidence that severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) contaminates the marine environment and is bioaccumulated in filter-feeding shellfish. Previous study shows the Pacific oyster tissues can bioaccumulate the SARS-CoV-2, and the oyster heat shock protein 70 (oHSP70) may play as the primary attachment receptor to bind SARS-CoV-2\'s recombinant spike protein S1 subunit (rS1). However, detailed information about the interaction between rS1 and oHSP70 is still unknown. In this study, we confirmed that the affinity of recombinant oHSP70 (roHSP70) for rS1 (KD = 20.4 nM) is comparable to the receptor-binding affinity of rACE2 for rS1 (KD = 16.7 nM) by surface plasmon resonance (SPR)-based Biacore and further validated by enzyme-linked immunosorbent assay (ELISA). Three truncated proteins (roHSP70-N/C/M) and five mutated proteins (p.I229del, p.D457del, p.V491_K495del, p.K556I, and p.ΣroHSP70) were constructed according to the molecular docking results. All three truncated proteins have significantly lower affinity for rS1 than the full-length roHSP70, indicating that all three segments of roHSP70 are involved in binding to rS1. Further, the results of SPR and ELISA showed that all five mutant proteins had significantly lower affinity for rS1 than roHSP70, suggesting that amino acids at these sites are involved in binding to rS1. This study provides a preliminary theoretical basis for the bioaccumulation of SARS-CoV-2 in oyster tissues or using roHSP70 as the capture unit to selectively enrich virus particles for detection.
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