genetic variants

遗传变异
  • 文章类型: Journal Article
    观察性研究表明出生体重和端粒长度之间存在潜在的关系。然而,这两个参数之间的因果联系仍然未定义。在这项研究中,我们使用孟德尔随机化(MR)。这种方法采用遗传变异作为工具变量,探讨因果关系的存在,阐明出生体重与端粒长度之间的因果关系。
    我们使用35个单核苷酸多态性(SNP)作为出生体重的辅助变量。这些SNP是从涉及153,781名个体的荟萃分析中鉴定的。此外,我们从一项针对472,174名英国Biobank参与者的研究中获得了端粒长度的汇总统计数据.为了评估因果估计,我们应用了随机效应逆方差加权法(IVW)和其他几种MR方法,比如MR-Egger,加权中位数,和MR-PRESSO,以验证我们研究结果的可靠性。
    我们的分析支持遗传预测的出生体重与端粒3e长度之间的显着因果关系。出生体重的逆方差加权分析结果(Beta=0.048;95CI=0.023至0.073;p<0.001)证实了这种关联。
    我们的研究提供了有力的证据,支持较高的出生体重和较长的端粒长度之间的因果关系。
    UNASSIGNED: Observational studies have suggested a potential relationship between birthweight and telomere length. However, the causal link between these two parameters remains undefined. In this study, we use Mendelian Randomization (MR). This method employs genetic variants as instrumental variables, to explore the existence of causal associations and elucidate the causal relationship between birth weight and telomere length.
    UNASSIGNED: We used 35 single nucleotide polymorphisms (SNPs) as instrumental variables for birth weight. These SNPs were identified from a meta-analysis involving 153,781 individuals. Furthermore, we obtained summary statistics for telomere length from a study conducted on 472,174 United Kingdom Biobank participants. To evaluate the causal estimates, we applied the random effect inverse variance weighted method (IVW) and several other MR methods, such as MR-Egger, weighted median, and MR-PRESSO, to verify the reliability of our findings.
    UNASSIGNED: Our analysis supports a significant causal relationship between genetically predicted birth weight and telomer3e length. The inverse variance weighted analysis results for birth weight (Beta = 0.048; 95%CI = 0.023 to 0.073; p < 0.001) corroborate this association.
    UNASSIGNED: Our study provides robust evidence supporting a causal link between higher birth weight and longer telomere length.
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  • 文章类型: Letter
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  • 文章类型: Journal Article
    胃癌(GC)是全球癌症死亡的第三大原因,甲状腺功能减退已被确定为潜在的影响因素。尽管已知甲状腺功能减退症和各种癌症之间的关联,甲状腺功能减退症和GC之间的因果关系和这种关系的潜在介质仍不清楚.本研究旨在使用孟德尔随机化(MR)阐明这些关系。
    利用来自FinnGen和MRC综合流行病学单位开放全基因组关联研究(GWAS)数据库的遗传变异信息,我们进行了单变量和多变量MR分析,以探讨甲状腺功能减退症与GC风险之间的因果关系.分析针对BMI等混杂因素进行了调整,吸烟状况,和酒精的摄入,并包括介体MR分析以检查高胆固醇的作用。
    我们发现甲状腺功能减退与GC风险之间存在显著的负相关(OR=0.93,95%CI=0.89-0.98,P=0.003),没有反向因果关系或多效性的证据。对幽门螺杆菌感染的调整削弱了这种联系。调解员分析强调了高胆固醇水平,慢性乙型肝炎感染,糖尿病/内分泌疾病状态是甲状腺功能减退对GC风险的保护作用的重要媒介。
    我们的研究结果表明,甲状腺功能减退可能会对GC产生保护作用,部分是由高胆固醇和其他因素介导的。这些结果强调了甲状腺功能和代谢健康在GC风险中的重要性,为预防策略提供新的见解,并强调需要进一步研究这些复杂的关联。
    UNASSIGNED: Gastric cancer (GC) is the third leading cause of cancer death worldwide, and hypothyroidism has been identified as a potential influencing factor. Despite known associations between hypothyroidism and various cancers, the causal link between hypothyroidism and GC and potential mediators of this relationship remains unclear. This study aimed to clarify these relationships using Mendelian randomization (MR).
    UNASSIGNED: Utilizing genetic variant information from the FinnGen and MRC Integrative Epidemiology Unit open genome-wide association studies (GWAS) databases, we conducted univariable and multivariable MR analyses to explore the causal relationship between hypothyroidism and GC risk. The analysis was adjusted for confounders such as BMI, smoking status, and alcohol intake, and included mediator MR analysis to examine the role of high cholesterol.
    UNASSIGNED: We identified a significant inverse association between hypothyroidism and GC risk (OR = 0.93, 95% CI= 0.89-0.98, P = 0.003), with no evidence of reverse causation or pleiotropy. Adjustments for Helicobacter pylori infection weakened this association. Mediator analysis highlighted high cholesterol levels, chronic hepatitis B infection, and diabetes/endocrine disease status as significant mediators of the protective effect of hypothyroidism on GC risk.
    UNASSIGNED: Our findings suggest that hypothyroidism may confer a protective effect against GC, mediated in part by high cholesterol and other factors. These results underscore the importance of thyroid function and metabolic health in GC risk, offering new insights for preventive strategies and highlighting the need for further research into these complex associations.
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  • 文章类型: Journal Article
    脂谱受噪声和遗传变异的影响。然而,对职业噪声和遗传变异与年龄相关的血脂变化的关联知之甚少,动脉粥样硬化性心血管疾病的发生和发展的一个重要事件。我们旨在评估基于应激激素生物合成的基因中血脂变化率与职业噪声和遗传变异的关联。该队列成立于2012年和2013年,并一直跟进到2017年。共有952名参与者被纳入最终分析,所有参与者被分为两组,暴露组和对照组,根据工作区域中暴露的噪音水平。对基于应激激素生物合成的基因中的单核苷酸多态性(SNP)进行了基因分型。从2012年到2017年进行了五次体检,并重复五次血脂测量。血脂的估计年度变化(EAC)计算为任何2次相邻检查之间的血脂水平差异除以时间间隔(年)。使用具有可交换相关结构的重复测量分析的广义估计方程来评估暴露于噪声(与作为对照相比)和上述SNP对血脂EAC的影响。我们发现,参与者在暴露于噪声时经历了与年龄相关的高密度脂蛋白胆固醇(HDL-C)水平的加速下降(β=-0.38,95%置信区间(CI),-0.66至-0.10,P=0.007),调整工作持续时间后,性别,吸烟,酒精消费,和包年。这种趋势仅在COMT-rs165815TT基因型的参与者中发现(β=-1.19,95%CI,-1.80至-0.58,P<0.001),但不是在那些CC或CT基因型。在多次调整后,噪声暴露和rs165815的相互作用是微不足道的(P相互作用=0.010)。与DDC-rs11978267AA基因型携带者相比,携带rs11978267GG基因型的参与者甘油三酯(TG)的EAC降低(β=-5.06,95%CI,-9.07~-1.05,P=0.013).携带DBH-rs4740203CC基因型的参与者总胆固醇(TC)的EAC升高(β=1.19,95%CI,0.06至2.33,P=0.039)。然而,经过多次校正后,这些结果无统计学意义.这些结果表明,职业噪声暴露与HDL-C水平的年龄相关加速下降有关,COMT-rs165815基因型似乎改变了噪声暴露对职业人群HDL-C变化的影响。
    Lipid profiles are influenced by both noise and genetic variants. However, little is known about the associations of occupational noise and genetic variants with age-related changes in blood lipids, a crucial event in the initiation and evolution of atherosclerotic cardiovascular diseases. We aimed to evaluate the associations of blood lipid change rates with occupational noise and genetic variants in stress hormone biosynthesis-based genes. This cohort was established in 2012 and 2013 and was followed up until 2017. A total of 952 participants were included in the final analysis and all of them were categorized to two groups, the exposed group and control group, according to the exposed noise levels in their working area. Single nucleotide polymorphisms (SNPs) in stress hormone biosynthesis-based genes were genotyped. Five physical examinations were conducted from 2012 to 2017 and lipid measurements were repeated five times. The estimated annual changes (EACs) of blood lipid were calculated as the difference in blood lipid levels between any 2 adjacent examinations divided by their time interval (year). The generalized estimating equations for repeated measures analyses with exchangeable correlation structures were used to evaluate the influence of exposing to noise (versus being a control) and the SNPs mentioned above on the EACs of blood lipids. We found that the participants experienced accelerated age-related decline in high-density lipoprotein cholesterol (HDL-C) levels as they were exposed to noise (β = -0.38, 95% confidence interval (CI), -0.66 to -0.10, P = 0.007), after adjusting for work duration, gender, smoking, alcohol consumption, and pack-years. This trend was only found in participants with COMT-rs165815 TT genotype (β = -1.19, 95% CI, -1.80 to -0.58, P < 0.001), but not in those with the CC or CT genotypes. The interaction of noise exposure and rs165815 was marginally significant (Pinteraction = 0.010) after multiple adjustments. Compared with DDC-rs11978267 AA genotype carriers, participants carrying rs11978267 GG genotype had decreased EAC of triglycerides (TG) (β = -5.06, 95% CI, -9.07 to -1.05, P = 0.013). Participants carrying DBH-rs4740203 CC genotype had increased EAC of total cholesterol (TC) (β = 1.19, 95% CI, 0.06 to 2.33, P = 0.039). However, these findings were not statistically significant after multiple adjustments. These results indicated that Occupational noise exposure was associated with accelerated age-related decreases in HDL-C levels, and the COMT-rs165815 genotype appeared to modify the effect of noise exposure on HDL-C changes among the occupational population.
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  • 文章类型: Journal Article
    先前的观察性研究表明,单纯疱疹病毒(HSV)的过去感染与特发性肺纤维化(IPF)有关。本研究旨在确定HSV感染(暴露因素)和IPF(结果因素)之间的因果关系。
    到目前为止,针对HSV感染(芬兰血统的1,595例和211,856例对照)和IPF(芬兰血统的1,028例和196,986例对照)进行了这项双样本孟德尔随机化(MR)研究,这是一项最大的公开全基因组关联研究(GWAS).
    我们在IPFGWAS数据集中没有发现所有选定的9种HSV感染相关的遗传工具变异(IVs)的显着多效性或异质性。有趣的是,我们发现随着HSV基因感染的增加,根据逆方差加权(IVW)分析(比值比[OR]=1.280,95%置信区间[CI]:1.048-1.563;p=0.015)和加权中位数(OR=1.321,95%CI:1.032-1.692;p=0.027),IPF风险增加。
    我们的分析表明遗传上增加的HSV感染对IPF风险的因果关系。因此,HSV感染可能是IPF的潜在危险因素。
    UNASSIGNED: Previous observational studies have shown that past infection of herpes simplex virus (HSV) is associated with idiopathic pulmonary fibrosis (IPF). The present study aims to identify the causal link between HSV infection (exposure factor) and IPF (outcome factor).
    UNASSIGNED: To date, the largest publicly available genome-wide association study (GWAS) for HSV infection (1,595 cases and 211,856 controls from Finnish ancestry) and for IPF (1,028 cases and 196,986 controls from Finnish ancestry) were used to perform this two-sample Mendelian randomization (MR) study.
    UNASSIGNED: We found no significant pleiotropy or heterogeneity of all selected nine HSV infection-associated genetic instrumental variants (IVs) in IPF GWAS dataset. Interestingly, we found that as HSV infection genetically increased, IPF risk increased based on an inverse-variance weighted (IVW) analysis (odds ratio [OR] = 1.280, 95% confidence interval [CI]: 1.048-1.563; p = 0.015) and weighted median (OR = 1.321, 95% CI: 1.032-1.692; p = 0.027).
    UNASSIGNED: Our analysis suggests a causal effect of genetically increased HSV infection on IPF risk. Thus, HSV infection may be a potential risk factor for IPF.
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  • 文章类型: Journal Article
    观察性研究表明,代谢综合征(MetS)和化脓性汗腺炎(HS)之间存在关联,但这种关系是否是因果关系尚不清楚.阐明因果方向可以提供对疾病机制和潜在干预措施的见解。我们使用MetS和HS的全基因组关联研究(GWAS)的汇总统计数据进行了双向双样本孟德尔随机化(MR)。对于验证,我们使用来自独立GWAS的数据复制了MetS分析。我们应用了多种MR方法,主要是逆方差加权(IVW)回归,并进行了敏感性分析,以评估异质性和多效性。MR分析显示MetS导致HS风险增加(IVW比值比[OR],1.428[95%CI,1.193-1.710];p<0.001),具有来自敏感性分析的一致证据。然而,HS似乎没有因果关系影响MetS风险(IVW或,1.008[95%CI,0.988-1.028];p=0.438)。这项研究提供了证据,表明MetS会增加患HS的风险。然而,我们没有发现从HS到MetS的反向因果关系的证据.需要进一步的研究来阐明MetS与随后的HS发展之间已确定的因果关联的潜在机制。
    Observational studies have suggested an association between metabolic syndrome (MetS) and hidradenitis suppurativa (HS), but whether this relationship is causal remains unclear. Elucidating the causal direction could provide insights into disease mechanisms and potential interventions. We performed bidirectional two-sample Mendelian randomization (MR) using summary statistics from genome-wide association studies (GWAS) of MetS and HS. For validation, we replicated the MetS analysis using data from an independent GWAS. We applied multiple MR methods, primarily inverse variance-weighted (IVW) regression, and conducted sensitivity analyses to assess heterogeneity and pleiotropy. The MR analysis demonstrated MetS causally increased HS risk (IVW odds ratio [OR], 1.428 [95% CI, 1.193-1.710]; p < 0.001), with consistent evidence from sensitivity analyses. However, HS did not appear to causally influence MetS risk (IVW OR, 1.008 [95% CI, 0.988-1.028]; p = 0.438). This study provides evidence that MetS causally increases the risk of developing HS. However, we found no evidence for a causal relationship in the reverse direction from HS to MetS. Further research is warranted to elucidate the mechanisms underlying the identified causal association between MetS and subsequent HS development.
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  • 文章类型: Journal Article
    背景:这项研究利用了两个样本的孟德尔随机化(MR)方法来探索1,400种代谢物与肺纤维化之间的因果关系,利用遗传变异作为工具变量。通过坚持工具变量选择的严格标准,这项研究旨在揭示可能影响肺纤维化风险和进展的代谢途径,提供对潜在治疗目标的见解。
    方法:利用OpenGWAS项目中的数据,其中包括一个重要的欧洲群体,和来自加拿大纵向衰老研究(CLSA)的代谢物GWAS数据,这项研究采用了先进的统计方法。这些包括方差逆加权(IVW),加权中位数估计,以及使用R软件环境进行的全面敏感性分析,以确保因果推断的稳健性。
    结果:该研究确定了62种与肺纤维化有显著因果关系的代谢物,强调风险增强和保护性代谢因素。这些广泛的代谢物清单为早期检测提供了广泛的潜在治疗靶标和生物标志物,强调肺纤维化背后的代谢复杂性。
    结论:这项MR研究的发现极大地促进了我们对肺纤维化代谢基础的理解,这表明特定代谢物的改变可能影响疾病的风险和进展。这些见解为开发新的诊断和治疗策略铺平了道路,强调代谢调节在控制肺纤维化中的潜力。
    BACKGROUND: This study leverages a two-sample Mendelian Randomization (MR) approach to explore the causal relationships between 1,400 metabolites and pulmonary fibrosis, using genetic variation as instrumental variables. By adhering to stringent criteria for instrumental variable selection, the research aims to uncover metabolic pathways that may influence the risk and progression of pulmonary fibrosis, providing insights into potential therapeutic targets.
    METHODS: Utilizing data from the OpenGWAS project, which includes a significant European cohort, and metabolite GWAS data from the Canadian Longitudinal Aging Study (CLSA), the study employs advanced statistical methods. These include inverse variance weighting (IVW), weighted median estimations, and comprehensive sensitivity analyses conducted using the R software environment to ensure the robustness of the causal inferences.
    RESULTS: The study identified 62 metabolites with significant causal relationships with pulmonary fibrosis, highlighting both risk-enhancing and protective metabolic factors. This extensive list of metabolites presents a broad spectrum of potential therapeutic targets and biomarkers for early detection, underscoring the metabolic complexity underlying pulmonary fibrosis.
    CONCLUSIONS: The findings from this MR study significantly advance our understanding of the metabolic underpinnings of pulmonary fibrosis, suggesting that alterations in specific metabolites could influence the risk and progression of the disease. These insights pave the way for the development of novel diagnostic and therapeutic strategies, emphasizing the potential of metabolic modulation in managing pulmonary fibrosis.
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  • 文章类型: Journal Article
    脑白质疏松症(LA)在T2加权磁共振成像扫描上表现为脑白质高强度,并对应于脑组织中的白质病变或异常。临床上,它通常在40年代初检测到,在全球范围内,年龄>60岁的个体中非常普遍。从成像的角度来看,LA可以呈现为几种异质形式,包括深部或皮质下白质中的点状和斑片状病变;具有室管帽的病变,铅笔薄衬里,和光滑的光环;以及不规则的病变,并不总是良性的。鉴于其可能对正常大脑功能产生有害影响,并因此增加公共卫生负担,相当多的努力集中在调查各种风险因素与洛杉矶风险之间的关联上,并制定相关的临床干预措施。然而,研究结果不一致,很可能是由于研究设计的潜在差异,神经成像方法,和样本量以及LA固有的神经影像学异质性和多因素性质。在这篇文章中,我们提供了LA的概述,并总结了有关其流行病学的现有知识,神经影像学分类,病理特征,危险因素,和潜在的干预策略。
    Leukoaraiosis (LA) manifests as cerebral white matter hyperintensities on T2-weighted magnetic resonance imaging scans and corresponds to white matter lesions or abnormalities in brain tissue. Clinically, it is generally detected in the early 40s and is highly prevalent globally in individuals aged >60 years. From the imaging perspective, LA can present as several heterogeneous forms, including punctate and patchy lesions in deep or subcortical white matter; lesions with periventricular caps, a pencil-thin lining, and smooth halo; as well as irregular lesions, which are not always benign. Given its potential of having deleterious effects on normal brain function and the resulting increase in public health burden, considerable effort has been focused on investigating the associations between various risk factors and LA risk, and developing its associated clinical interventions. However, study results have been inconsistent, most likely due to potential differences in study designs, neuroimaging methods, and sample sizes as well as the inherent neuroimaging heterogeneity and multi-factorial nature of LA. In this article, we provided an overview of LA and summarized the current knowledge regarding its epidemiology, neuroimaging classification, pathological characteristics, risk factors, and potential intervention strategies.
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  • 文章类型: Journal Article
    本研究旨在研究circRNAs和相关遗传变异与前列腺癌(PCa)风险的关联,并阐明这种关联的生物学机制。通过使用MiOncoCirc数据库,我们首先比较了25个配对PCa和邻近正常组织之间circRNAs的表达水平,以确定风险相关的circRNAs.然后,我们使用逻辑回归模型来评估4662名前列腺癌患者和3114名健康对照中候选circRNAs中的遗传变异与PCa风险之间的关联。并确定cirHIBADHrs11973492为显性遗传模型中的显着风险相关变体(比值比=1.20,95%置信区间:1.08-1.34,P=7.06×10-4),改变了相应RNA链的二级结构。在计算机模拟分析中,我们发现cirHIBADH海绵和沉默21RNA结合蛋白(RPBs)富集在RNA剪接途径,其中使用外部RNA测序数据以及内部(4个组织样本)和公开的单细胞转录组鉴定并验证了HNRNPA1为中心RBP.此外,我们证明了HNRNPA1可能会影响包括MYC在内的标志,DNA修复,和E2F靶信号通路,从而促进致癌作用。总之,cirHIBADH的遗传变异可能是RNA剪接相关RBPs(包括HNRNPA1)的海绵和抑制剂,在PCa中起致癌作用.
    The current study aimed to investigate associations of circRNAs and related genetic variants with risk of prostate cancer (PCa) as well as to elucidate biological mechanisms underlying the associations. By using the MiOncoCirc database, we first compared expression levels of circRNAs between 25 paired PCa and adjacent normal tissues to identify risk-associated circRNAs. We then used logistic regression models to evaluate associations between genetic variants in candidate circRNAs and PCa risk among 4662 prostate cancer patients and 3114 healthy controls, and identified circHIBADH rs11973492 as a significant risk-associated variant (odds ratio = 1.20, 95% confidence interval: 1.08-1.34, P = 7.06 × 10 -4) in a dominant genetic model, which altered the secondary structure of the corresponding RNA chain. In the in silico analysis, we found circHIBADH to sponge and silence 21 RNA-binding proteins (RPBs) enriched in the RNA splicing pathway, among which HNRNPA1 was identified and validated as a hub RBP using an external RNA-sequencing data as well as the in-house (four tissue samples) and publicly available single-cell transcriptomes. Additionally, we demonstrated that HNRNPA1 might influence hallmarks including MYC, DNA repair, and E2F target signaling pathways, thereby promoting carcinogenesis. In conclusion, genetic variants in circHIBADH may act as a sponge and inhibitor of RNA splicing-associated RBPs including HNRNPA1, playing an oncogenic role in PCa.
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  • 文章类型: Journal Article
    核心1合酶糖蛋白-N-乙酰半乳糖胺3-β-半乳糖基转移酶1(C1GALT1)已知在胃癌的发展中起关键作用,但很少有研究阐明C1GALT1基因变异与胃癌易感性之间的关联。通过使用来自基因型和表型(dbGAP)数据库的全基因组关联研究数据,我们用逻辑回归模型评估了这些关联,并确定C1GALT1中的rs35999583与胃癌风险相关(奇数比,0.83;95%置信区间[CI],0.75-0.92;P=3.95×10-4]。C1GALT1mRNA在胃肿瘤组织中表达显著增高,C1GALT1mRNA水平较高的胃癌患者的总生存率较差(风险比,1.33;95%CI,1.05-1.68;Plog-rank=1.90×10-2)。此外,我们发现C1GALT1拷贝数变异在各种免疫细胞中存在差异,C1GALT1mRNA表达与CD4+T细胞和巨噬细胞的浸润水平呈正相关.这些结果强调了C1GALT1的遗传变异可能在胃癌风险中起重要作用,并为C1GALT1成为胃癌易感性和免疫状态的有希望的预测因子提供了新的见解。
    Core 1 synthase glycoprotein-N-acetylgalactosamine 3-β-galactosyltransferase 1 (C1GALT1) is known to play a critical role in the development of gastric cancer, but few studies have elucidated associations between genetic variants in C1GALT1 and gastric cancer susceptibility. By using the genome-wide association study data from the database of Genotype and Phenotype (dbGAP), we evaluated these associations with a logistic regression model and identified that the rs35999583 in C1GALT1 was associated with gastric cancer risk (odd ratio, 0.83; 95% confidence interval [CI], 0.75-0.92; P = 3.95 × 10 -4]. C1GALT1 mRNA expression was significantly higher in gastric tumor tissues, and gastric cancer patients with higher C1GALT1 mRNA levels had the worse overall survival rates (hazards ratio, 1.33; 95% CI, 1.05-1.68; P log-rank = 1.90 × 10 -2). Furthermore, we found that C1GALT1 copy number variations differed in various immune cells and C1GALT1 mRNA expression was positively correlated with the infiltrating levels of CD4 + T cells and macrophages. These results highlight that genetic variants of C1GALT1 may play an important role in gastric cancer risk and provide a new insight for C1GALT1 to be a promising predictor of gastric cancer susceptibility and immune status.
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