genetic disease

遗传性疾病
  • 文章类型: Journal Article
    背景:低血清铜蓝蛋白浓度被认为是威尔逊病(WD)筛查的有力标志物,测量血清铜蓝蛋白氧化酶活性可能是一个更有价值的诊断工具,但是它还没有得到充分的研究。
    方法:在2016年1月1日至2019年9月2日期间评估血清铜蓝蛋白氧化酶活性的所有患者均纳入本研究。血清铜蓝蛋白氧化酶活性的诊断性能采用受试者工作特征曲线分析(ROC),斯皮尔曼的等级相关性,和曼-惠特尼U测试。
    结果:WD患者血清铜蓝蛋白氧化酶活性显着降低(0.87U/L,IQR0.61-1.54)。确定WD的血清铜蓝蛋白氧化酶活性的最佳临界值为7U/L,敏感性和特异性分别为97.03%和98.19%,分别。此外,这项研究表明,酶促和免疫反应性血清铜蓝蛋白试验呈正相关。作为主要的诊断方法,在842例WD患者中,有818例(97.15%)观察到血清铜蓝蛋白水平低于酶促或免疫反应性测试的诊断临界值。与无症状患者中存在K-F环相比,血清铜蓝蛋白检测的准确性明显更高(56.12%VS95.08%)。此外,神经系统患者头颅MRI的阳性率与血清铜蓝蛋白检测相似(92.91%VS97.40%)。此外,71例患者的遗传结果不明确,使诊断复杂化。然而,血清铜蓝蛋白检测成功确定了71例患者中的65例(91.55%)。
    结论:血清铜蓝蛋白氧化酶活性在诊断WD方面具有优异的性能,应广泛用作WD患者的首选检查。
    BACKGROUND: Low serum ceruloplasmin concentration is considered robust marker for Wilson disease (WD) screening, measuring serum ceruloplasmin oxidase activity might be an even more valuable diagnostic tool, but it has not been sufficiently studied.
    METHODS: All patients who were assessed for serum ceruloplasmin oxidase activity between January 1, 2016, and September 2, 2019, were enrolled in this study. The diagnostic performance of serum ceruloplasmin oxidase activity was analyzed using receiver operating characteristic curve analysis (ROC), Spearman\'s rank correlation, and Mann-Whitney U test.
    RESULTS: Serum ceruloplasmin oxidase activity was significantly decreased in WD patients (0.87 U/L, IQR 0.61-1.54). The optimal cut-off of serum ceruloplasmin oxidase activity to identified WD is 7 U/L, with sensitivity and specificity of 97.03 % and 98.19 %, respectively. Furthermore, this study revealed a positive correlation between enzymatic and immunoreactive serum ceruloplasmin tests. As primary diagnostic methods, serum ceruloplasmin levels below the diagnostic cut-offs for either the enzymatic or immunoreactive tests were observed in 818 out of 842 WD patients (97.15 %). Compared with the presence of K-F rings in asymptomatic patients, the accuracy of serum ceruloplasmin tests was significantly higher (56.12 % VS 95.08 %). Moreover, the positive rate of cranial MRI in neurological patients was similar to the tests of serum ceruloplasmin (92.91 % VS 97.40 %). Moreover, 71 patients had ambiguous genetic results, complicating the diagnosis. However, serum ceruloplasmin tests successfully identified 65 out of these 71 patients (91.55 %).
    CONCLUSIONS: Serum ceruloplasmin oxidase activity has excellent performance in diagnosing WD, which should be widely used as preferred test in WD patients.
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  • 文章类型: Journal Article
    植入前基因检测(PGT)可以降低家族性遗传病的风险,染色体异常,和反复流产。目前尚不清楚具有PGT适应症的遗传顾问是否理解并接受PGT的含义。需要一个完善和验证的工具来评估知识,态度,具有PGT适应症的遗传顾问的实践(KAP)水平。这项研究的目的是为具有PGT适应症的遗传顾问开发和验证PGTKAP问卷(PGT-KAP-Q)。
    首先,我们在文献综述和定性访谈的基础上建立了项目库。第二,我们使用德尔菲法开发了PGT-KAP-Q。第三,我们使用项目分析和心理测量学评估来评估问卷的质量.项目分析包括极值比较,相关性和Cronbachα(α)系数方法的应用,和因素分析。我们还评估了问卷的内容和结构效度,以及内部一致性,测试-重测可靠性,和半分割的可靠性。
    经过文献回顾和访谈,在三轮专家磋商的基础上,我们形成了一个43项问卷。在有效性分析中,项目的内容效度指数(I-CVI)和平均量表水平CVI(S-CVI/Ave)值(分别>0.78和>0.95)证实了问卷的内容效度。探索性因素分析表明,所有43个项目都有较强的因子负荷(>0.4),PGT-KAP-Q三个因子解释了总方差的51.97%。问卷的克朗巴赫α系数为0.95(p<0.05),分裂半信度为0.76(p<0.05),重测信度系数为0.78(p<0.05)。
    针对具有PGT适应症的遗传顾问的43项PGT-KAP-Q是可靠且有效的。它包含适度数量的项目,患者容易理解和接受,可用于临床研究和应用。
    UNASSIGNED: Preimplantation genetic testing (PGT) can reduce the risk of familial genetic diseases, chromosome abnormalities, and recurrent abortions. It is unclear whether genetic counselees with PGT indications understand and accept the implications of PGT. A well-developed and validated tool is needed to evaluate the knowledge, attitude, and practice (KAP) levels of genetic counselees with PGT indications. The purpose of this study was to develop and validate a PGT KAP questionnaire (PGT-KAP-Q) for genetic counselees with PGT indications.
    UNASSIGNED: First, we established an item pool based on a literature review and qualitative interviews. Second, we developed the PGT-KAP-Q using the Delphi method. Third, we evaluated the quality of the questionnaire using item analysis and psychometric evaluation. The item analysis included extreme value comparison, application of the correlation and Cronbach\'s alpha (α) coefficient methods, and factor analysis. We also evaluated the content and structural validity of the questionnaire, as well as the internal consistency, test-retest reliability, and split-half reliability.
    UNASSIGNED: After the literature review and interviews, and based on three rounds of expert consultations, we formed a 43-item questionnaire. In the validity analysis, the item\'s content validity index (I-CVI) and the average scale level CVI (S-CVI/Ave) values (>0.78 and >0.95, respectively) confirmed the questionnaire\'s content validity. Exploratory factor analysis showed that all 43 items had strong factor loadings (>0.4), and the three factors of the PGT-KAP-Q explained 51.97 % of the total variance. The Cronbach\'s α coefficient for the questionnaire was 0.95 (p < 0.05), the split-half reliability was 0.76 (p < 0.05) and the test-retest reliability coefficient was 0.78 (p < 0.05).
    UNASSIGNED: The 43-item PGT-KAP-Q for genetic counselees with PGT indications is reliable and valid. It contains a moderate number of items, is easy for patients to understand and accept, and can be used for clinical research and applications.
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  • 文章类型: Journal Article
    先天性脑积水(CH)的全球患病率约为每500名具有多方面诱发因素的婴儿中的1名。遗传影响是CH发病机理的主要贡献者,流行病学证据表明,他们参与了全球观察到的所有病例的40%。关于个体遗传易感性的知识可以显著提高预后准确性,同时帮助临床决策过程。然而,精确的遗传病因仅在不到5%的人类病例中被确定。为了发现其他潜在的遗传基因座,需要更多的CH病例进行全面的基因测序。对其潜在遗传学的更深入理解可能会为这种脑部疾病的分子和细胞基础提供宝贵的见解。这篇综述总结了通过基因测序技术在人类中鉴定的相关基因,除了目前与CH相关的4个基因(两个X连锁基因L1CAM和AP1S2,两个常染色体隐性遗传MPDZ和CCDC88C)。其他人主要参与渡槽异常,纤毛运动,神经系统发育。进一步概述了通过动物模型基因编辑技术揭示的前瞻性CH相关基因,主要集中在4个途径,即纤毛合成和运动,离子通道和运输,Reissner的光纤(RF)合成,细胞凋亡,和神经发生。值得注意的是,活动纤毛的正常功能为脑室内的脑脊液(CSF)循环提供了重要的动力,而纤毛相关基因的突变是这种情况的主要原因。到目前为止,在人类中仅鉴定出有限数量的CH相关基因。基因型和表型的整合用于疾病诊断代表了医学领域的新趋势。动物模型提供了对CH发病机制的见解,并有助于我们理解其与相关并发症的关系。如肾囊肿,脊柱侧弯,和心肌病,因为这些基因也可能在这些疾病的发展中起作用。在动物中发现的基因为新疗法提供了潜在的靶标,但需要通过未来的人类研究进一步验证。
    The global prevalence rate for congenital hydrocephalus (CH) is approximately one out of every five hundred births with multifaceted predisposing factors at play. Genetic influences stand as a major contributor to CH pathogenesis, and epidemiological evidence suggests their involvement in up to 40% of all cases observed globally. Knowledge about an individual\'s genetic susceptibility can significantly improve prognostic precision while aiding clinical decision-making processes. However, the precise genetic etiology has only been pinpointed in fewer than 5% of human instances. More occurrences of CH cases are required for comprehensive gene sequencing aimed at uncovering additional potential genetic loci. A deeper comprehension of its underlying genetics may offer invaluable insights into the molecular and cellular basis of this brain disorder. This review provides a summary of pertinent genes identified through gene sequencing technologies in humans, in addition to the 4 genes currently associated with CH (two X-linked genes L1CAM and AP1S2, two autosomal recessive MPDZ and CCDC88C). Others predominantly participate in aqueduct abnormalities, ciliary movement, and nervous system development. The prospective CH-related genes revealed through animal model gene-editing techniques are further outlined, focusing mainly on 4 pathways, namely cilia synthesis and movement, ion channels and transportation, Reissner\'s fiber (RF) synthesis, cell apoptosis, and neurogenesis. Notably, the proper functioning of motile cilia provides significant impulsion for cerebrospinal fluid (CSF) circulation within the brain ventricles while mutations in cilia-related genes constitute a primary cause underlying this condition. So far, only a limited number of CH-associated genes have been identified in humans. The integration of genotype and phenotype for disease diagnosis represents a new trend in the medical field. Animal models provide insights into the pathogenesis of CH and contribute to our understanding of its association with related complications, such as renal cysts, scoliosis, and cardiomyopathy, as these genes may also play a role in the development of these diseases. Genes discovered in animals present potential targets for new treatments but require further validation through future human studies.
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  • 文章类型: Journal Article
    背景:临床医生传统上旨在为患者的临床表现确定一个单一的解释;然而,在某些情况下,诊断可能仍然难以捉摸或无法全面解释临床表现。近年来,下一代测序的进步,包括全外显子组测序,导致了患者双重诊断的偶然识别。在此,我们介绍了五名诊断为双重罕见遗传病的儿科患者的病例。他们的自然史和诊断过程进行了探索,报告了利用下一代诊断技术的经验教训。
    结果:5例儿科病例(3名男孩,据报道,2名女孩)患有双重诊断。诊断时的年龄为3个月至10岁。主要临床表现为精神运动迟缓和肌张力增加,有些伴有肝功能障碍,外观异常,性早熟,双脚背屈限制和内翻,等。全外显子组测序后,在这些患者中确认了9种疾病:病例1中的Angelman综合征和Krabbe病,病例2中的Citrin缺乏症和Kabuki综合征,病例3中的2型同型半胱氨酸血症和拷贝数变异,病例4中的分离甲基丙二酸血症和B型Niemann-Pick病,病例5中的分离甲基丙二酸血症和21-羟化酶缺乏症。鉴定了15个基因突变和2个CNV。观察到四个新的突变,包括KMT2D中的c.15292de1A,在SLC25A13中c.159_164inv和c.1427G>A,在MTHFR中c.591C>G。
    结论:我们的发现强调了临床医生对历史和体格检查的重要性保持警惕的重要性。全面的临床经验对于识别非典型临床特征至关重要,特别是涉及双重罕见遗传疾病的病例。
    BACKGROUND: Clinicians traditionally aim to identify a singular explanation for the clinical presentation of a patient; however, in some cases, the diagnosis may remain elusive or fail to comprehensively explain the clinical findings. In recent years, advancements in next-generation sequencing, including whole-exome sequencing, have led to the incidental identification of dual diagnoses in patients. Herein we present the cases of five pediatric patients diagnosed with dual rare genetic diseases. Their natural history and diagnostic process were explored, and lessons learned from utilizing next-generation diagnostic technologies have been reported.
    RESULTS: Five pediatric cases (3 boys, 2 girls) with dual diagnoses were reported. The age at diagnosis was from 3 months to 10 years. The main clinical presentations were psychomotor retardation and increased muscular tension, some accompanied with liver dysfunction, abnormal appearance, precocious puberty, dorsiflexion restriction and varus of both feet, etc. After whole-exome sequencing, nine diseases were confirmed in these patients: Angelman syndrome and Krabbe disease in case 1, Citrin deficiency and Kabuki syndrome in case 2, Homocysteinemia type 2 and Copy number variant in case 3, Isolated methylmalonic acidemia and Niemann-Pick disease type B in case 4, Isolated methylmalonic acidemia and 21-hydroxylase deficiency in case 5. Fifteen gene mutations and 2 CNVs were identified. Four novel mutations were observed, including c.15292de1A in KMT2D, c.159_164inv and c.1427G > A in SLC25A13, and c.591 C > G in MTHFR.
    CONCLUSIONS: Our findings underscore the importance of clinicians being vigilant about the significance of historical and physical examination. Comprehensive clinical experience is crucial for identifying atypical clinical features, particularly in cases involving dual rare genetic diseases.
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  • 文章类型: Journal Article
    以前对遗传疾病的研究主要集中在蛋白质编码变异上,俯瞰人类基因组中巨大的非编码区.高通量测序技术和功能基因组学工具的发展使得功能性非编码变体的系统鉴定成为可能。这些变异会影响基因表达,regulation,和染色质构象,从而有助于疾病的发病机理。了解非编码变异对遗传疾病影响的机制对于开发精确靶向治疗和实施个性化医疗策略是必不可少的。非编码区域的复杂性带来了许多挑战和研究机会。在这次审查中,我们介绍了一系列与遗传疾病有关的非编码变异,以及精确识别和深入理解非编码基因组复杂性的研究策略和先进技术。我们将深入研究研究挑战,并提出潜在的解决方案,以揭示罕见和复杂疾病的遗传基础。
    Previous studies on genetic diseases predominantly focused on protein-coding variations, overlooking the vast noncoding regions in the human genome. The development of high-throughput sequencing technologies and functional genomics tools has enabled the systematic identification of functional noncoding variants. These variants can impact gene expression, regulation, and chromatin conformation, thereby contributing to disease pathogenesis. Understanding the mechanisms that underlie the impact of noncoding variants on genetic diseases is indispensable for the development of precisely targeted therapies and the implementation of personalized medicine strategies. The intricacies of noncoding regions introduce a multitude of challenges and research opportunities. In this review, we introduce a spectrum of noncoding variants involved in genetic diseases, along with research strategies and advanced technologies for their precise identification and in-depth understanding of the complexity of the noncoding genome. We will delve into the research challenges and propose potential solutions for unraveling the genetic basis of rare and complex diseases.
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  • 文章类型: Journal Article
    在过去的几年中,第三代测序(TGS)在检测遗传疾病方面带来了一场勇敢的新革命。由于TGS具有显著的优点,如阅读长度长,快速检测,以及复杂和罕见结构变体的精确检测。这种方法大大提高了疾病诊断的效率,并补充了短阅读测序的缺点。在本文中,我们首先简要介绍了TGS最重要的代表之一的工作机制,太平洋生物科学(PacBio)的单分子实时(SMRT)测序,然后回顾和比较不同测序技术的优缺点。最后,重点介绍了SMRT测序在遗传病检测中的应用进展。还介绍了TGS在其他领域的应用前景。随着SMRT技术的不断创新和应用领域的不断扩大,SMRT测序在遗传病检测中具有广阔的临床应用前景,有望成为其他疾病分子诊断的重要工具。
    Third-generation sequencing (TGS) has led to a brave new revolution in detecting genetic diseases over the last few years. TGS has been rapidly developed for genetic disease applications owing to its significant advantages such as long read length, rapid detection, and precise detection of complex and rare structural variants. This approach greatly improves the efficiency of disease diagnosis and complements the shortcomings of short-read sequencing. In this paper, we first briefly introduce the working mechanism of one of the most important representatives of TGS, single-molecule real-time (SMRT) sequencing by Pacific Bioscience (PacBio), followed by a review and comparison of the advantages and disadvantages of different sequencing technologies. Finally, we focused on the progress of SMRT sequencing applications in genetic disease detection. Future perspectives on the applications of TGS in other fields were also presented. With the continuous innovation of the SMRT technologies and the expansion of their fields of application, SMRT sequencing has broad clinical application prospects in genetic diseases detection, and is expected to become an important tool for the molecular diagnosis of other diseases.
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  • 文章类型: Journal Article
    溶质载体家族4(SLC4)是一种重要的蛋白质,负责跨细胞膜运输各种离子并介导各种生理功能,例如离子传输功能,蛋白质-蛋白质相互作用,和分子转导。SLC4分子的缺乏可能导致多系统疾病,特别是,呼吸系统,消化性,泌尿,内分泌,造血,和中枢神经系统。目前,没有有效的策略来治疗这些疾病。还发现SLC4蛋白有助于肿瘤发生和发展,在相当多的临床试验中,其中一些被视为治疗靶标。这表明SLC4蛋白具有潜在的临床应用前景。鉴于它们的功能特征,迫切需要审查碳酸氢盐转运蛋白的具体功能,他们的相关疾病,以及所涉及的病理机制。我们总结了SLC4家族基因突变引起的疾病,并简要介绍了这些疾病的临床表现以及目前的治疗策略。此外,我们说明了它们在目前已经研究的生理学和发病机制方面的作用,这可能是未来疾病的治疗和诊断靶点和药物研发的新方向。
    The solute carrier family 4 (SLC4) is an important protein responsible for the transport of various ions across the cell membrane and mediating diverse physiological functions, such as the ion transporting function, protein-to-protein interactions, and molecular transduction. The deficiencies in SLC4 molecules may cause multisystem disease involving, particularly, the respiratory system, digestive, urinary, endocrine, hematopoietic, and central nervous systems. Currently, there are no effective strategies to treat these diseases. SLC4 proteins are also found to contribute to tumorigenesis and development, and some of them are regarded as therapeutic targets in quite a few clinical trials. This indicates that SLC4 proteins have potential clinical prospects. In view of their functional characteristics, there is a critical need to review the specific functions of bicarbonate transporters, their related diseases, and the involved pathological mechanisms. We summarize the diseases caused by the mutations in SLC4 family genes and briefly introduce the clinical manifestations of these diseases as well as the current treatment strategies. Additionally, we illustrate their roles in terms of the physiology and pathogenesis that has been currently researched, which might be the future therapeutic and diagnostic targets of diseases and a new direction for drug research and development.
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  • 文章类型: Case Reports
    色素失禁症(IP)是一种罕见的X连锁显性遗传性皮肤病,会影响皮肤,头发,牙齿,眼睛和中枢神经系统。我们介绍了一个女性患者,由B细胞中κ轻多肽基因增强子抑制剂的低态致病变体引起的轻度IP,激酶γ(IKBKG)基因。这是第一次报道一名女性IP患者患有低态变异,NM_001099856.6:c.1423dup,这是男性无汗性外胚层发育不良与免疫缺陷的原因。
    Incontinentia pigmenti (IP) is a rare X-linked dominant genodermatosis that affects skin, hair, teeth, eyes and central nervous system. We present the case of a female patient with mild IP caused by a hypomorphic pathogenic variant of the inhibitor of the kappa light polypeptide gene enhancer in B cells, kinase gamma (IKBKG) gene. This is the first report of a female IP patient with the hypomorphic variant, NM_001099856.6: c.1423dup, which is causative of anhidrotic ectodermal dysplasia with immune deficiency in males.
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  • 文章类型: Case Reports
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  • 文章类型: Journal Article
    RNA therapeutics inhibit the expression of specific proteins/RNAs by targeting complementary sequences of corresponding genes or encode proteins for the synthesis desired genes to treat genetic diseases. RNA-based therapeutics are categorized as oligonucleotide drugs (antisense oligonucleotides, small interfering RNA, RNA aptamers), and mRNA drugs. The antisense oligonucleotides and small interfering RNA for treatment of genetic diseases have been approved by the FDA in the United States, while RNA aptamers and mRNA drugs are still in clinical trials. Chemical modifications can be applied to RNA drugs, such as pseudouridine modification of mRNA, to reduce immunogenicity and improve the efficacy. The secure and effective delivery systems such as lipid-based nanoparticles, extracellular vesicles, and virus-like particles are under development to address stability, specificity, and safety issues of RNA drugs. This article provides an overview of the specific molecular mechanisms of eleven RNA drugs currently used for treating genetic diseases, and discusses the research progress of chemical modifications and delivery systems of RNA drugs.
    RNA药物能够通过识别互补序列靶向对应基因以抑制特定蛋白或RNA的表达,或通过翻译合成目的基因编码的蛋白来发挥遗传性疾病治疗作用。RNA药物主要分为寡核苷酸药物(包括反义寡核苷酸、小干扰RNA和RNA适配体)和信使RNA药物等。其中,反义寡核苷酸和小干扰RNA已用于临床治疗遗传病,而RNA适配体和信使RNA药物目前还处于临床试验阶段。当前主要通过对RNA药物进行化学修饰(如对信使RNA进行假尿嘧啶修饰)来降低免疫原性和提升药物疗效,以及开发纳米粒载体、细胞外囊泡和类病毒载体等递送载体来解决RNA药物的稳定性、特异靶向性和安全性等问题。本文概述了目前用于治疗遗传病的11种RNA药物的具体作用分子机制,并简单讨论了RNA药物的化学修饰及递送载体的研究现状。.
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