biochemical

Biochemical
  • 文章类型: Journal Article
    针对程序性死亡-1(PD-1)途径的免疫检查点阻断疗法在患有各种癌症类型的患者中显示出显著的功效和持久的反应。治疗效果的早期预测对于优化治疗计划和避免潜在的副作用很重要。在这项工作中,我们开发了一种有效的机器学习预测方法,该方法使用常规血液学和生化参数来预测泛癌患者PD-1联合治疗的疗效.共431例鼻咽癌患者,接受PD-1检查点抑制剂联合治疗的食管癌和肺癌纳入本研究.患者分为两组:进行性疾病(PD)和疾病控制(DC)组。在PD-1治疗之前和第三周收集血液学和生化参数。开发并训练了六个机器学习模型,以预测8-12周时PD-1联合治疗的疗效。通过统计学分析PD-1联合治疗3周前后57项血液生物标志物,热图,主成分分析不能准确预测治疗结果.然而,有了机器学习模型,AdaBoost分类器和GBDT都表现出高水平的预测效率,临床上可接受的AUC值超过0.7。AdaBoost分类器在6种机器学习模型中表现出最高的性能,灵敏度为0.85,特异性为0.79。我们的研究证明了机器学习根据血液学和生化参数的变化预测PD-1联合治疗疗效的潜力。
    Immune checkpoint blockade therapy targeting the programmed death-1(PD-1) pathway has shown remarkable efficacy and durable response in patients with various cancer types. Early prediction of therapeutic efficacy is important for optimizing treatment plans and avoiding potential side effects. In this work, we developed an efficient machine learning prediction method using routine hematologic and biochemical parameters to predict the efficacy of PD-1 combination treatment in Pan-Cancer patients. A total of 431 patients with nasopharyngeal carcinoma, esophageal cancer and lung cancer who underwent PD-1 checkpoint inhibitor combination therapy were included in this study. Patients were divided into two groups: progressive disease (PD) and disease control (DC) groups. Hematologic and biochemical parameters were collected before and at the third week of PD-1 therapy. Six machine learning models were developed and trained to predict the efficacy of PD-1 combination therapy at 8-12 weeks. Analysis of 57 blood biomarkers before and after three weeks of PD-1 combination therapy through statistical analysis, heatmaps, and principal component analysis did not accurately predict treatment outcome. However, with machine learning models, both the AdaBoost classifier and GBDT demonstrated high levels of prediction efficiency, with clinically acceptable AUC values exceeding 0.7. The AdaBoost classifier exhibited the highest performance among the 6 machine learning models, with a sensitivity of 0.85 and a specificity of 0.79. Our study demonstrated the potential of machine learning to predict the efficacy of PD-1 combination therapy based on changes in hematologic and biochemical parameters.
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  • 文章类型: Editorial
    暂无摘要。
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  • 文章类型: Journal Article
    最近,纳米杀虫剂的使用在控制许多害虫方面显示出显著的功效。然而,纳米农药的作用,尤其是纳米乳液,抑制白蚁,Odontotermesformosanus(Shiraki,1909)(O。formosanus),尚未研究。因此,这项研究旨在生产桉树(EucalyptusglobulusLabill;E-EO)和肉豆蔻(肉豆蔻香精;N-EO)的精油的纳米乳液,以抑制O.formosanus。通过紫外-可见对桉树纳米乳(E-NE)和肉豆蔻纳米乳(N-NE)的分析,动态光散射,zeta电位,透射电子显微镜,扫描电子显微镜,和能量色散光谱。此外,用质谱仪(GC-MS)进行的气相色谱化学分析显示了E-NE和N-NE的主要成分。E-NE的主要化学成分包括D-柠檬烯,桉树脑,1,5-环辛二烯,3,4-二甲基,苯,和1-甲基-3-(1-甲基乙基)-,N-NE的主要成分是环己烷,1-亚甲基-4-(1-甲基乙烯基)-,桉树脑,和L-。阿尔法。-松油醇.死亡率分别为100%和99.53%,分别,用140mg/mL的浓度处理24小时后,与23.43%和43.55%相比,分别,E-EO和N-EO处理。这些结果表明,精油纳米乳液比精油本身更有效。此外,E-NE和N-NE对解毒酶如乙酰胆碱酯酶的影响,羧酸酯酶,酸性和碱性磷酸酶进行了研究,以及总蛋白质浓度,与对照组相比,结果显着增加或减少。此外,显示了暴露于E-NE和N-NE后发现的组织学和形态学改变。总的来说,这项研究的结果清楚地表明,纳米农药配制的纳米乳液可能具有巨大的潜力,用于控制Formosanus的环境安全杀虫剂。
    Recently, the use of nanopesticides has shown significant efficacy in the control of many pests. However, the effect of nanopesticides, especially nanoemulsions, on suppressing termites, Odontotermes formosanus (Shiraki, 1909) (O. formosanus), has not been studied yet. Therefore, this study aimed to produce nanoemulsions of the essential oils of eucalyptus (Eucalyptus globulus Labill; E-EO) and nutmeg (Myristica fragrans Houtt; N-EO) to suppress O. formosanus. The analysis of eucalyptus nanoemulsion (E-NE) and nutmeg nanoemulsion (N-NE) was confirmed by using UV-Vis, dynamic light scattering, zeta potential, transmission electron microscopy, scanning electron microscopy, and energy dispersive spectroscopy. In addition, chemical analysis by Gas Chromatography with a mass spectrometer (GC-MS) exhibited the major constituents of E-NE and N-NE. The principal chemical components of E-NE included D-limonene, eucalyptol, 1,5-cyclooctadiene,3,4-dimethyl, benzene, and 1-methyl-3-(1 methylethyl)-, while the main constituents in N-NE were cyclohexane,1-methylene-4-(1 methylethenyl)-, eucalyptol, and L-. alpha. -terpineol. The mortality rates were 100% and 99.53%, respectively, after 24 hours of treatment with a concentration of 140 mg/mL, compared to 23.43% and 43.55%, respectively, from E-EO and N-EO treatment. These results refer to the essential oils\' nanoemulsion as far more effective than the essential oils themselves. Furthermore, the effects of E-NE and N-NE on detoxification enzymes such as acetylcholinesterase, carboxylesterase, acid and alkaline phosphatase were investigated, as well as total protein concentrations, and the results have been found to be significantly increasing or decreasing in comparison with control. Besides, histological and morphological alterations found post exposure to E-NE and N-NE were shown. Overall, the results from this study clearly indicate that the nanopesticide-formulated nanoemulsions may have great potential to be used as novel, environmentally safe insecticides for controlling O. formosanus.
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  • 文章类型: Journal Article
    UNASSIGNED: Soil phosphorus (P) deficiency limits plant growth and productivity in grassland ecosystems and may moderate the growth-promoting effects of \"carbon dioxide (CO2) fertilization effect\".
    UNASSIGNED: To evaluate the interactive effects of these two factors on the growth and physiology for annual ryegrass (Lolium multiflorum Lam.), plants were grown in controlled growth chambers with a range of P supply (0.004, 0.012, 0.02, 0.06, 0.1 and 0.5 mM) under two levels of CO2 (400 and 800 μmol mol-1, respectively).
    UNASSIGNED: Elevated [CO2] dramatically increased the aboveground biomass and net photosynthetic rates of annual ryegrass by 14.5% and 25.3% under sufficient P supply (0.5 mM), respectively, whereas decreased the belowground biomass and net photosynthetic rates under lower P supply of P0.004, P0.02, and P0.06. Two-way ANOVA results showed that CO2 × P (p < 0.001) significantly affected stomatal traits, leaf photosynthesis and biomass. The stimulation of growth and photosynthesis by elevated CO2 concentration (e[CO2]) was reduced or highly suppressed, indicating that the sensitivity of annual ryegrass to P deficiency was enhanced under e[CO2].
    UNASSIGNED: These results indicated that P limitation may offset the positive effects of e[CO2] on plant growth by altering stomatal traits, leaf photochemical processes and biochemical composition in annual ryegrass.
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  • 文章类型: Journal Article
    两个新化合物,3-羟基-1-(3-羟基-5-甲氧基苯基)-2-甲基丙-1-酮(1)和1,2,6-三羟基-8-甲氧基-2,3,3a,9b-四氢环戊二烯并[c]异色烯-5(1H)-酮(2),连同9种已知的化合物3-11,涉及吡喃酮,苯丙烯类和生物碱,是从链格孢菌获得的,从贯叶连翘中分离出的内生菌。通过广泛的光谱分析阐明了结构,包括1DNMR,2DNMR,HRESIMS,IR,紫外光谱。绝对构型是通过光谱学技术和X射线结晶法建立的。此外,以分子对接为指导,化合物1和3在LPS诱导的BV-2小胶质细胞中表现出有希望的抗神经炎症活性,IC50值分别为0.9±0.3μM和3.0±0.4μM。此外,它们有效地减弱了LPS诱导的NO升高,TNF-α,BV-2小胶质细胞中IL-6和IL-1β的产生。这些发现使A.alternata的代谢产物多样化,并强调了它们作为对抗神经炎症相关疾病的主要化合物的潜力。
    Two new compounds, 3-hydroxy-1-(3-hydroxy-5-methoxyphenyl)-2-methyl propan-1-one (1) and 1,2,6-trihydroxy-8-methoxy-2,3,3a,9b-tetrahydrocyclopenta[c] isochromen-5(1H)-one (2), along with nine known compounds 3-11, involving pyranones, phenylpropenoids and alkaloids, were obtained from Alternaria alternata, an endophyte isolated from Hypericum perforatum L. The structures were elucidated by extensive spectroscopic analyses, including 1D NMR, 2D NMR, HRESIMS, IR, UV spectroscopy. The absolute configuration was established via spectroscopy techniques and X-ray crystallisation method. Furthermore, guided by molecular docking, compounds 1 and 3 exhibited promising anti-neuroinflammatory activity in LPS-induced BV-2 microglial cells, with IC50 values of 0.9 ± 0.3 μM and 3.0 ± 0.4 μM respectively. Moreover, they effectively attenuated the LPS-induced elevation of NO, TNF-α, IL-6, and IL-1β production in BV-2 microglial cells. These findings diversify the metabolite of A. alternata and highlight their potential as leading compounds against neuroinflammatory-related diseases.
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  • 文章类型: Journal Article
    铀正在对全球人口造成危险的影响。已记录了不同的修复方法,但植物修复方法已在全球范围内受到赞誉。铀的生物累积,特别是作为超级累积剂,已在有限的植物物种中记录。因此,目前的研究是为了阐述整体的U积累,空心莲子草和凤眼莲对不同浓度铀的生化和光化学反应。结果表明,U的积累量较高。其次是E。crassipes;根系积累量最大。以干重计,亲酸类A.philoxeroides和E.crassipes累积多达948.88mg/kg和801.87mg/kg。生化结果表明,紫杉叶和茎中的超氧化物歧化酶(SOD)降低;而对所有处理均有反应。过氧化物酶(POD)和过氧化氢酶(CAT)对所有处理均表现出不规则的反应;其中主要的增加是在T3(120μmol/L)和72h时观察到的,最高可达138μ/g-FW(POD)和178μ/g-FW(CAT),以及1870μ/g-FW(POD)和73μ/g-FW(CAT)。分别。荧光比值Fv/Fm与U处理浓度之间的相关系数为显著负。从结果可以得出结论,铀停止了生化和光化学反应,但植物抵抗了其影响,同时积累了大量的铀,这对于将来对铀影响的地点进行原位修复的干预具有良好的前景。
    Uranium is causing a hazardous impact on the human population throughout the globe. Different methods of remediation have been documented but the approach of phytoremediation has been praised throughout the globe. The bioaccumulation of uranium especially as a hyper-accumulator, has been documented in limited plant species. Therefore the current studies were conducted to elaborate on the overall U accumulation, biochemical and photochemical reactions in Alternanthera philoxeroides and Eichhornia crassipes to different concentrations of Uranium. The results showed that the accumulation of U in A.philoxeroides is higher; followed by E.crassipes; with maximum amounts of roots accumulation. Overall A.philoxeroides and E.crassipes accumulate as much as 948.88 mg/kg and 801.87 mg/kg on a dry weight basis. The biochemical results showed that Superoxide dismutase (SOD) decreased in the leaves and stem of A.philoxeroides; whereas an increase has been seen in E.crassipes in response to all treatments. peroxidase (POD) and Catalase (CAT) showed irregular response to all treatments; where the main increase was observed at T3 (120 μmol/L) and 72 h up to 138 μ/g-FW (POD) and 178 μ/g-FW (CAT) in A.philoxeroides and 1870 μ/g-FW (POD) and 73 μ/g-FW (CAT) in E.crassipes, respectively. The correlation coefficient between the fluorescence ratio Fv/Fm and the concentrations of U-treatment was significantly negative. It is concluded from the results that Uranium halted the biochemical and photochemical reaction but the plants resisted its impact while accumulating a good amount of uranium which is a good prospect for future interventions for the in-situ remediation of uranium-affected sites.
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  • 文章类型: Journal Article
    背景:石墨烯不可避免地泄漏到环境中的原因是其扩大的就业。尽管石墨烯对生态系统的影响已经如火如荼,缺乏对植物影响的进一步信息。特别是,石墨烯对植物生长发育的影响各不相同,缺乏有关碳和氮代谢调节的基本信息。在这里,从形态和生化指标方面研究了石墨烯(0、25、50、100和200g·kg-1)对玉米幼苗的影响。这项研究的目的是更好地了解石墨烯如何调节植物的碳和氮代谢,并了解其与叶片结构和植物生长的相互作用。
    结果:结果表明,50g·kg-1石墨烯增加了植物高度,阀杆直径,叶面积,和干重,which,然而,被高水平的石墨烯(200g·kg-1)抑制。进一步的研究表明,不同浓度的石墨烯可以增加叶片厚度和维管束面积,以及叶片的净光合速率(Pn)。此外,25g·kg-1和50g·kg-1石墨烯增强了叶片气孔导度(Cond),蒸腾速率(Tr),细胞间二氧化碳(Ci),和叶绿素含量,而较高的浓度降低了上述指标。在50g·kg-1时,石墨烯通过增加碳代谢产物(果糖,蔗糖,和可溶性糖)和可溶性蛋白质(氮代谢物)。这些酶包括蔗糖合酶(SS),蔗糖磷酸合成酶(SPS),硝酸还原酶(NR),谷氨酰胺合成酶(GS),和谷氨酸合酶(GOGAT)。
    结论:这些结果表明,石墨烯可以有效调节参与碳和氮代谢的关键酶的活性,并通过碳代谢产生的物质通过提高光合效率补充氮代谢。从而维持碳氮平衡,促进植物生长发育。这些指标之间的关系很好地解释了石墨烯通过增强光合碳代谢和维持代谢平衡促进玉米幼苗生长的机理。对于玉米幼苗生长,建议使用50g·kg-1土壤进行石墨烯处理。本文受版权保护。保留所有权利。
    BACKGROUND: Leakage of graphene into the environment has resulted from its increasing use. Although the impact of graphene on ecosystems is already in full swing, information regarding its impact on plants is lacking. In particular, the effects of graphene on plant growth and development vary, and basic information on the regulation of carbon and nitrogen metabolism is missing. In the current study, the way in which graphene (0, 25, 50, 100, and 200 g kg-1 ) affects maize seedlings was studied in terms of morphological and biochemical indicators. The purpose of this study was to understand better how graphene regulates plant carbon and nitrogen metabolism and to understand its interactions with leaf structure and plant growth.
    RESULTS: The results showed that 50 g kg-1 graphene increased plant height, stem diameter, leaf area, and dry weight; however, this was inhibited by the high level of graphene (200 g kg-1 ). Further studies indicated that different concentrations of graphene could increase leaf thickness and vascular bundle area as well as the net photosynthetic rate (Pn) of leaves; 25 and 50 g kg-1 graphene enhanced the leaves stomatal conductance (Cond), transpiration rate (Tr), intercellular carbon dioxide (Ci), and chlorophyll content. Higher concentrations decreased the above indicators. At 50 g kg-1 , graphene increased the activity of carbon/nitrogen metabolism enzymes by increasing carbon metabolites (fructose, sucrose, and soluble sugars) and soluble proteins (nitrogen metabolites). These enzymes included sucrose synthase (SS), sucrose phosphate synthase (SPS), nitrate reductase (NR), glutamine synthase (GS), and glutamate synthase (GOGAT).
    CONCLUSIONS: These results indicate that graphene can regulate the activities of key enzymes involved in carbon and nitrogen metabolism effectively and supplement nitrogen metabolism through substances produced by carbon metabolism by improving photosynthetic efficiency, thus maintaining the balance between carbon and nitrogen and promoting plant growth and development. The relationship between these indexes explained the mechanism by which graphene supported the growth of maize seedlings by enhancing photosynthetic carbon metabolism and maintaining metabolic balance. For maize seedling growth, graphene treatment with 50 g kg-1 soil is recommended. © 2023 Society of Chemical Industry.
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  • 文章类型: Journal Article
    目的:油菌是一种有价值的食用和药用真菌。在这项研究中,Ergosta-4,6,8(14),22-四烯-3-酮(ETO)是首次从脂肪草获得的,是研究其抗糖尿病和相关机制。
    方法:Ergosta-4,6,8(14),22-四烯-3-酮(ETO)由IR和NMR定义。采用ELISA法检测相关生化指标,苏木精-伊红染色(H&E),空腹血糖水平(FBG),口服葡萄糖耐量试验(OGTT),组织匀浆生化测量,免疫组织化学染色和蛋白质印迹。
    结果:在这项研究中,ETO治疗组显示空腹血糖(FBG)水平显着降低,高剂量组(HD)比糖尿病对照组(DC)低约10mmol/L,增加体重,HD组比DC组平均重约5g。此外,三酰甘油(TG)的水平,总胆固醇(TC),发现低密度脂蛋白胆固醇(LDL-C)降低,而高密度超氧化物歧化酶(SOD)的水平,脂蛋白胆固醇(HDL-C),过氧化氢酶(CAT),在ETO治疗组中,谷胱甘肽过氧化物酶(GSH-Px)增加。糖尿病对照组(DC)的胰腺和肝脏切片表现出几种组织病理学改变,但ETO治疗组表现出改善。ETO治疗导致胰岛形态和功能的显著恢复。此外,蛋白质印迹分析的结果表明,ETO可用于糖尿病的治疗,因为它修饰了部分IRS1/PI3K/AKT信号通路。
    Pholiota adiposa is a valuable edible and medicinal fungus. In this research, Ergosta-4, 6, 8(14), 22-tetraen-3-one (ETO) was obtained from Pholiota adiposa which is the first time to study the anti-diabetic and related mechanism.
    Ergosta-4, 6, 8 (14), 22-tetraen-3-one (ETO) was defined by IR and NMR. Relevant biochemical indicators were detected by ELISA assay, hematoxylin-eosin staining (H & E), fasting glucose levels (FBG), oral glucose tolerance test (OGTT), tissue homogenate biochemical measurements, immunohistochemical staining and western blot.
    In this research, the ETO treatment groups exhibited a significant reduction in fasting blood glucose (FBG) levels, the High dose group (HD) was about 10 mmol/L lower than the diabetic control group (DC), and increase in body weight, the HD group weighed about 5 g more than the DC group on average. Also, the levels of triacylglycerol (TG), total cholesterol (TC), and low-density lipoprotein-cholesterol (LDL-C) were found to be decreased, while the levels of high-density superoxide dismutase (SOD), lipoproteincholesterol (HDL-C), catalase (CAT), and glutathione peroxidase (GSH-Px) were increased in the ETO treatment groups. The pancreatic and liver sections of diabetic control group (DC) exhibited several histopathological changes, but the ETO treatment groups exhibited improvements. ETO treatment led to the significant restoration of islet morphology and function. Moreover, the results of the western blot analysis indicate that ETO could be used for the treatment of diabetes, since it modifies part of the IRS1 / PI3K / AKT signaling pathway.
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  • 文章类型: Journal Article
    桑叶形状是指示产量的重要农艺性状,增长,发展,和栖息地的变化。我国是世界上种桑养蚕最早的国家,也是中华民族对人类文明的伟大贡献之一。ATAC-seq(使用测序的转座酶可接近染色质的测定)是最近开发的用于染色质可接近性的全基因组分析的技术。本研究中用于ATAC测序的样品分为两组全叶(CK-1和CK-2)和叶状叶(HL-1和HL-2),每组重复两次。相关的主题分析,差异表达基序筛选,通过原始字母分析对桑树叶片形状差异进行功能注释,最终获得导致异形叶片产生的转录因子(TFs)。这些转录因子在植物中很常见,特别是TCP家族,显示与其他木本植物的叶片发育和生长有关,并且是导致桑树叶片形状差异的潜在转录因子。利用ATAC-seq剖析不同形态桑叶叶形调控机制是保护桑树种质资源、提高桑树产量的重要途径。有利于培育抗逆性强的桑树品种,促进蚕桑可持续发展,保护和改善生态环境。
    Mulberry leaf shape is an important agronomic trait indicating yield, growth, development, and habitat variation. China was the earliest country in the world to grow mulberry for sericulture, and it is also one of the great contributions of the Chinese nation to human civilization. ATAC-seq (Assay for Transposase Accessible Chromatin using sequencing) is a recently developed technique for genome-wide analysis of chromatin accessibility. The samples used for ATAC sequencing in this study were divided into two groups of whole leaves (CK-1 and CK-2) and lobed leaves (HL-1 and HL-2), with two replicates in each group. The related motif analysis, differential expression motif screening, and functional annotation of mulberry leaf shape differences were performed by raw letter analysis to finally obtain the transcription factors (TFs) that lead to the production of heteromorphic leaves. These transcription factors are common in plants, especially the TCP family, shown to be associated with leaf development and growth in other woody plants and are a potential transcription factor responsible for leaf shape differences in mulberry. Dissecting the regulatory mechanisms of leaf shape of different forms of mulberry leaves by ATAC-seq is an important way to protect mulberry germplasm resources and improve mulberry yield. It is conducive to cultivating mulberry varieties with high resistance to adversity, promoting the sustainable development of sericulture, and protecting and improving the ecological environment.
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  • 文章类型: Journal Article
    生产抹茶需要高质量的茶叶。遮荫是可以提高绿茶质量的关键农艺措施之一。抹茶生产者的目标包括增加茶芽中的氨和叶绿素含量,降低茶多酚含量,并增强茶叶香气的形成。在这项研究中,福鼎白茶植物在露天条件(对照)以及在85%(S85)和95%(S95)的阴影下栽培。S85处理的叶绿素含量最高,其次是S95和对照治疗。此外,遮荫增加了茶氨酸和咖啡因的含量,同时降低多酚(表儿茶素和表没食子儿茶素)的含量,从而优化抹茶的口味。共鉴定出2788个差异表达基因(DEGs),其中1151和1637分别响应于阴影而上调和下调。GO和KEGG富集分析表明,大多数DEG与代谢过程相关(例如,MAPK信号,植物-病原体相互作用,和苯丙素生物合成)。因此,遮荫可以调节茶树的新陈代谢,信令,生物合成活性,和环境相关的基因转录变化。茶树中氨基酸permeases(APP)编码基因的表达下调。因此,遮荫影响茶氨酸的生物合成和AAP介导的茶氨酸在茶树中的分布。
    High-quality tea leaves are required for matcha production. Shading is one of the key agronomic practices that can increase the quality of green tea. The objectives among matcha tea producers include increasing the ammonia and chlorophyll contents of tea buds, decreasing tea polyphenol contents, and enhancing tea aroma formation. In this study, Fuding white tea plants were cultivated under open-air conditions (control) as well as under 85% (S85) and 95% (S95) shade. The chlorophyll contents were highest for the S85 treatment, followed by the S95 and control treatments. Moreover, shading increased the theanine and caffeine contents, while decreasing the polyphenol (epicatechin and epigallocatechin) contents, thereby optimizing matcha tea flavors. A total of 2788 differentially expressed genes (DEGs) were identified, of which 1151 and 1637 were respectively upregulated and downregulated in response to shading. The GO and KEGG enrichment analyses indicated that most of the DEGs were associated with metabolic processes (e.g., MAPK signaling, plant-pathogen interactions, and phenylpropanoid biosynthesis). Therefore, shading may modulate tea plant metabolism, signaling, biosynthetic activities, and environment-related changes to gene transcription. The expression of amino acid permeases (APP) encoding genes was downregulated in tea plants. Thus, shading influences theanine biosynthesis and the AAP-mediated distribution of theanine in tea plants.
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