Signal Recognition Particle

信号识别粒子
  • 文章类型: Journal Article
    免疫介导的坏死性肌病(IMNM)是特发性炎性肌病范围内的一种罕见且新近识别的自身免疫性疾病。它的特点是肌炎特异性自身抗体,血清肌酸激酶水平升高,炎症浸润,和弱点。根据特异性自身抗体的存在或不存在,IMNM可以分为三种亚型:抗信号识别颗粒肌炎,抗3-羟基-3-甲基戊二酰辅酶A还原酶肌炎,和血清阴性IMNM。近年来,IMNM越来越受到关注,成为研究热点。最近的研究表明,IMNM的发病机制与免疫系统的异常激活有关。包括抗体介导的免疫反应,补语,和免疫细胞,特别是巨噬细胞,以及炎症因子的异常释放。自噬和内质网应激等非免疫机制也参与了这一过程。此外,已经确定了与IMNM相关的遗传变异,提供对疾病遗传机制的新见解。IMNM治疗研究也取得了进展,包括免疫抑制剂的使用和生物制剂的开发。尽管在理解IMNM的病因和治疗方面存在挑战,最新的研究结果为深入研究该疾病的致病机制和确定新的治疗策略提供了重要的指导和见解。
    Immune-mediated necrotizing myopathy (IMNM) is a rare and newly recognized autoimmune disease within the spectrum of idiopathic inflammatory myopathies. It is characterized by myositis-specific autoantibodies, elevated serum creatine kinase levels, inflammatory infiltrate, and weakness. IMNM can be classified into three subtypes based on the presence or absence of specific autoantibodies: anti-signal recognition particle myositis, anti-3-hydroxy-3-methylglutaryl-coenzyme A reductase myositis, and seronegative IMNM. In recent years, IMNM has gained increasing attention and emerged as a research hotspot. Recent studies have suggested that the pathogenesis of IMNM is linked to aberrant activation of immune system, including immune responses mediated by antibodies, complement, and immune cells, particularly macrophages, as well as abnormal release of inflammatory factors. Non-immune mechanisms such as autophagy and endoplasmic reticulum stress also participate in this process. Additionally, genetic variations associated with IMNM have been identified, providing new insights into the genetic mechanisms of the disease. Progress has also been made in IMNM treatment research, including the use of immunosuppressants and the development of biologics. Despite the challenges in understanding the etiology and treatment of IMNM, the latest research findings offer important guidance and insights for delving deeper into the disease\'s pathogenic mechanisms and identifying new therapeutic strategies.
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  • 文章类型: Journal Article
    未折叠蛋白反应(UPR)通过多种策略缓解内质网(ER)应激,包括减少蛋白质合成,增加蛋白质折叠能力,并增强错误折叠的蛋白质降解。经过多组学分析,我们发现信号识别粒子14(SRP14),SRP的重要组成部分,在经历内质网应激的细胞中显著减少。进一步的实验表明,SRP14的减少需要PRKR样ER激酶(PERK)介导的真核翻译起始因子2α(eIF2α)磷酸化,但与ATF4或ATF3转录因子无关。SRP14的减少与融合蛋白和内源性组织蛋白酶D的易位减少相关。具有延伸阻滞能力的SRP14变体的强制表达可防止组织蛋白酶D在应激细胞中的易位减少。而没有活性的SRP14突变体则没有。最后,SRP14的过表达增加了UPR并加重了ER应激诱导的细胞死亡。这些数据表明由PERK-SRP14轴介导的转位衰减是UPR减轻ER应激的保护性措施。
    The unfolded protein response (UPR) relieves endoplasmic reticulum (ER) stress through multiple strategies, including reducing protein synthesis, increasing protein folding capabilities, and enhancing misfolded protein degradation. After a multi-omics analysis, we find that signal recognition particle 14 (SRP14), an essential component of the SRP, is markedly reduced in cells undergoing ER stress. Further experiments indicate that SRP14 reduction requires PRKR-like ER kinase (PERK)-mediated eukaryotic translation initiation factor 2α (eIF2α) phosphorylation but is independent of ATF4 or ATF3 transcription factors. The decrease of SRP14 correlates with reduced translocation of fusion proteins and endogenous cathepsin D. Enforced expression of an SRP14 variant with elongation arrest capability prevents the reduced translocation of cathepsin D in stressed cells, whereas an SRP14 mutant without the activity does not. Finally, overexpression of SRP14 augments the UPR and aggravates ER-stress-induced cell death. These data suggest that translocational attenuation mediated by the PERK-SRP14 axis is a protective measure for the UPR to mitigate ER stress.
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  • 文章类型: Journal Article
    SRP14是信号识别粒子(SRP)的关键蛋白亚基,一种核糖核蛋白复合物,对内质网的共翻译易位至关重要。在我们对不同细胞系中SRP14表达的研究中,我们在十二烷基硫酸钠-聚丙烯酰胺凝胶电泳(SDS-PAGE)上观察到其迁移的变化,一些细胞表现出较慢的迁移和其他迁移更快。然而,这种现象的原因仍然难以捉摸。我们的研究排除了选择性剪接的原因,相反,在较快迁移的变体中鉴定SRP14(SRP14P124A)中P124A突变的存在,而迁移较慢的变体缺乏这种突变。野生型SRP14P124或SRP14WT和SRP14P124A在各种细胞系中的随后异位表达证实,P124A突变确实导致SRP14的更快迁移。进一步的诱变分析表明,SRP14C末端富含丙氨酸的结构域内的P117A和A121P突变是SDS-PAGE上迁移改变的原因,而这个域之外的突变,比如P39A,Y27F,和T45A,没有这样的效果。此外,SRP14WT和SRP14P124A的异位表达在SRPRNA稳定性方面产生相似的结果,细胞形态学,和细胞生长,表明SRP14P124A代表SRP14的天然变体并保留相当的功能性。总之,在SRP14的富含丙氨酸的尾部脯氨酸取代丙氨酸导致在SDS-PAGE上更快的迁移,但对其功能影响不大。
    SRP14 is a crucial protein subunit of the signal recognition particle (SRP), a ribonucleoprotein complex essential for co-translational translocation to the endoplasmic reticulum. During our investigation of SRP14 expression across diverse cell lines, we observe variations in its migration on sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), with some cells exhibiting slower migration and others migrating faster. However, the cause of this phenomenon remains elusive. Our research rules out alternative splicing as the cause and, instead, identifies the presence of a P124A mutation in SRP14 (SRP14 P124A) among the faster-migrating variants, while the slower-migrating variants lack this mutation. Subsequent ectopic expression of wild-type SRP14 P124 or SRP14 WT and SRP14 P124A in various cell lines confirms that the P124A mutation indeed leads to faster migration of SRP14. Further mutagenesis analysis shows that the P117A and A121P mutations within the alanine-rich domain at the C-terminus of SRP14 are responsible for migration alterations on SDS-PAGE, whereas mutations outside this domain, such as P39A, Y27F, and T45A, have no such effect. Furthermore, the ectopic expression of SRP14 WT and SRP14 P124A yields similar outcomes in terms of SRP RNA stability, cell morphology, and cell growth, indicating that SRP14 P124A represents a natural variant of SRP14 and retains comparable functionality. In conclusion, the substitution of proline for alanine in the alanine-rich tail of SRP14 results in faster migration on SDS-PAGE, but has little effect on its function.
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  • 文章类型: Case Reports
    免疫介导的坏死性肌病(IMNM)是一种罕见的疾病,最早于2004年被描述。由于缺乏大型案例系列,对于IMNM没有正式的治疗建议.
    我们介绍了一例47岁的女性,她的四肢进行性无力,从下肢开始,逐渐影响上肢。她还报告在进行日常活动后出现呼吸困难。她入院时,她的上肢几乎无法移动,即使有支撑也无法站立。她的肌酸激酶(CK)水平显着增加(>3500u/l)。肌电图显示肌源性损伤,抗信号识别颗粒(抗SRP)和抗Ro52抗体高度阳性。右侧肱二头肌的病理活检显示骨骼肌坏死性肌病。她最终被诊断出患有抗SRPIMNN,并给予甲泼尼龙单药治疗和免疫球蛋白联合治疗,但她的症状继续恶化.患者拒绝承担环磷酰胺和利妥昔单抗可能导致的进一步肝功能障碍和血液系统损害,她选择尝试使用Ofatumumab(OFA)。
    接受三剂OFA治疗后,没有任何不良反应,她报告说,她的肌肉力量已经基本恢复,并且能够独立行走。循环系统中的B细胞已经耗尽,和肝功能等血液标志物一直保持在正常范围内。在后续行动中,她的活动耐受性继续提高。
    我们提出了一例SRP-IMNM的严重病例,其中患者对常规免疫疗法的反应较差。然而,早期序贯使用OFA治疗可快速缓解症状.这为SRP-IMNM的治疗提供了新的选择,未来将需要更多的大规模研究来验证我们的结果。
    Immune-mediated necrotizing myopathies (IMNM) is a rare disease that was first described in 2004. Due to the lack of large case series, there are no formal treatment recommendations for IMNM.
    We presented a case of a 47-year-old woman who experienced progressive limb weakness, starting from the lower limbs and gradually affecting the upper limbs. She also reported experiencing dyspnea after engaging in daily activities. When she was admitted to the hospital, her upper limbs were almost unable to move and she could not stand even with support. Her Creatine kinase (CK) level significantly increased (> 3500 u/l). Electromyography showed myogenic damage, anti-Signal recognition particle (anti-SRP) and anti-Ro52 antibodies were highly positive. Pathological biopsy of the right biceps muscle showed necrotizing myopathy in the skeletal muscle. She was ultimately diagnosed with anti-SRP IMNN, and was given monotherapy with methylprednisolone and combination therapy with immunoglobulin, but her symptoms continued to worsen. The patient refused to bear the possible further liver dysfunction and blood system damage caused by Cyclophosphamide and Rituximab, and she chose to try to use Ofatumumab (OFA).
    After receiving three doses of OFA treatment without any adverse reactions, she reported that her muscle strength had basically recovered and she was able to walk independently. The B cells in the circulatory system have been depleted, and blood markers such as liver function have consistently remained within normal range. During the follow up, her activity tolerance continued to improve.
    We have presented a severe case of SRP-IMNM in which the patient showed poor response to conventional immunotherapy. However, rapid symptom relief was achieved with early sequential use of OFA treatment. This provides a new option for the treatment of SRP-IMNM, and more large-scale studies will be needed in the future to verify our results.
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  • 文章类型: Journal Article
    信号识别颗粒(SRP)系统将大约30%的蛋白质组递送至内质网(ER)膜。SRP受体α(SRα)与SRP结合,以将新生分泌蛋白靶向真核细胞中的ER膜。在这项研究中,在海参中鉴定了SRα同源基因,刺参(AjSRα)。AjSRα编码641个氨基酸,与其哺乳动物同源物具有54.94%的同一性。像哺乳动物SRα一样,它预计包含SRP-αN域,SRP54_N域,和SRP54域。此外,AjSRα在成人组织中普遍表达,并表现出性别二态表达模式,与睾丸相比,卵巢中的表达明显更高。作为母性因素,在胚胎发育过程中可以连续检测到AjSRα。重要的是,我们首先尝试通过使用慢病毒载体递送SRα基因特异性shRNA来研究其功能,我们发现慢病毒载体不会诱导海参中免疫相关酶的上调。然而,与基于dsRNA的RNA干扰(RNAi)方法相比,慢病毒介导的RNAi引起基因表达的动态变化。本研究为海参SRα的作用机理研究提供了技术支持。
    The signal recognition particle (SRP) system delivers approximately 30% of the proteome to the endoplasmic reticulum (ER) membrane. SRP receptor alpha (SRα) binds to SRP for targeting nascent secreted proteins to the ER membrane in eukaryotic cells. In this study, the SRα homologous gene was identified in the sea cucumber, Apostichopus japonicus (AjSRα). AjSRα codes for 641 amino acids and has 54.94% identity with its mammalian homologs. Like mammalian SRα, it is expected to contain the SRP-alpha N domain, SRP54_N domain, and SRP54 domain. In addition, AjSRα is ubiquitously expressed in adult tissues and exhibits a sexually dimorphic expression pattern, with significantly higher expression in ovaries compared to testes. As a maternal factor, AjSRα can be continuously detected during embryonic development. Importantly, we first attempted to investigate its function by using lentiviral vectors for delivering SRα gene-specific shRNA, and we revealed that lentiviral vectors do not induce an upregulation of immune-related enzymes in sea cucumbers. However, compared to the dsRNA-based RNA interference (RNAi) method, lentivirus-mediated RNAi caused dynamic changes in gene expression at a later time. This study supplied the technical support for studying the functional mechanism of SRα in sea cucumbers.
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  • 文章类型: Systematic Review
    背景:Shwachman-Diamond综合征(SDS)是一种常染色体隐性遗传性疾病,可导致遗传性骨髓衰竭(IBMF),其特征是胰腺外分泌功能障碍和多种临床表型。在本研究中,我们回顾了国际上发表的关于SDS患者的报告,为了总结临床特征,流行病学,和SDS的治疗。
    方法:我们搜索了王坊和中国国家知识基础设施数据库,关键字为“Shwachman-Diamond综合征”,\"\"SDS,“SBDS基因”和“遗传性骨髓衰竭”为2002年1月至2022年10月发表的相关文章。此外,2002年1月至2022年10月发表的研究从科学网检索,PubMed,和MEDLINE数据库,使用“Shwachman-diamond综合征”作为关键字。最后,还包括在同济医院接受SDS治疗的一名儿童。
    结果:总结156例SDS患者的临床特征。SDS的三个主要临床特征是外周血细胞减少(96.8%),胰腺外分泌功能障碍(83.3%),未能茁壮成长(83.3%)。SDS突变检出率为94.6%(125/132)。SBDS中的突变,已经报道了DNAJC21、SRP54、ELF6和ELF1。男女比例约为1.3/1。发病年龄中位数为0.16岁,但是诊断年龄的中位数为1.3岁。
    结论:胰腺外分泌功能不全和生长障碍是常见的初始症状。SDS发病发生在儿童早期,个体差异明显。综合收集和分析病例相关数据可以帮助临床医生了解SDS的临床特点,提高早期诊断水平,促进临床有效干预。
    Shwachman-Diamond syndrome (SDS) is an autosomal recessive disease which results in inherited bone marrow failure (IBMF) and is characterized by exocrine pancreatic dysfunction and diverse clinical phenotypes. In the present study, we reviewed the internationally published reports on SDS patients, in order to summarize the clinical features, epidemiology, and treatment of SDS.
    We searched the WangFang and China National Knowledge Infrastructure databases with the keywords \"Shwachman-Diamond syndrome,\" \"SDS,\" \"SBDS gene\" and \"inherited bone marrow failure\" for relevant articles published from January 2002 to October 2022. In addition, studies published from January 2002 to October 2022 were searched from the Web of Science, PubMed, and MEDLINE databases, using \"Shwachman-diamond syndrome\" as the keyword. Finally, one child with SDS treated in Tongji Hospital was also included.
    The clinical features of 156 patients with SDS were summarized. The three major clinical features of SDS were found to be peripheral blood cytopenia (96.8%), exocrine pancreatic dysfunction (83.3%), and failure to thrive (83.3%). The detection rate of SDS mutations was 94.6% (125/132). Mutations in SBDS, DNAJC21, SRP54, ELF6, and ELF1 have been reported. The male-to-female ratio was approximately 1.3/1. The median age of onset was 0.16 years, but the diagnostic age lagged by a median age of 1.3 years.
    Pancreatic exocrine insufficiency and growth failure were common initial symptoms. SDS onset occurred early in childhood, and individual differences were obvious. Comprehensive collection and analysis of case-related data can help clinicians understand the clinical characteristics of SDS, which may improve early diagnosis and promote effective clinical intervention.
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  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    原叶绿素氧化还原酶(POR),将原叶绿素转化为叶绿素,是叶绿素生物合成中唯一的光依赖性酶。虽然它的催化反应和对叶绿体发育的重要性是众所周知的,对PORs的翻译后控制知之甚少。这里,我们发现cpSRP43和cpSRP54是叶绿体信号识别粒子通路的两个组成部分,在优化PORB的功能方面发挥着不同的作用,拟南芥中主要的POR亚型。伴侣cpSRP43稳定酶,并在叶片变绿和热休克期间提供适量的PORB,而cpSRP54增强了它与类囊体膜的结合,从而确保晚期叶绿素生物合成中足够水平的代谢通量。此外,cpSRP43和POR1的DnaJ样蛋白质链环蛋白样蛋白同时起稳定PORB的作用。总的来说,这些发现增强了我们对cpSPR43和cpSRP54在叶绿素合成和光合叶绿素结合蛋白组装的翻译后控制中的协调作用的理解.
    Protochlorophyllide oxidoreductase (POR), which converts protochlorophyllide into chlorophyllide, is the only light-dependent enzyme in chlorophyll biosynthesis. While its catalytic reaction and importance for chloroplast development are well understood, little is known about the post-translational control of PORs. Here, we show that cpSRP43 and cpSRP54, two components of the chloroplast signal recognition particle pathway, play distinct roles in optimizing the function of PORB, the predominant POR isoform in Arabidopsis. The chaperone cpSRP43 stabilizes the enzyme and provides appropriate amounts of PORB during leaf greening and heat shock, whereas cpSRP54 enhances its binding to the thylakoid membrane, thereby ensuring adequate levels of metabolic flux in late chlorophyll biosynthesis. Furthermore, cpSRP43 and the DnaJ-like protein CHAPERONE-LIKE PROTEIN of POR1 concurrently act to stabilize PORB. Overall, these findings enhance our understanding of the coordinating role of cpSPR43 and cpSRP54 in the post-translational control of chlorophyll synthesis and assembly of photosynthetic chlorophyll-binding proteins.
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  • 文章类型: Journal Article
    OBJECTIVE: The aim of this study was to elucidate the clinical and myopathological characteristics of patients with anti-signal recognition particle (SRP) positive immune-mediated necrotizing myopathy (IMNM) overlap Sjogren\'s syndrome (SS).
    METHODS: We retrospectively analyzed the data of anti-SRP positive IMNM patients admitted in the Neurology Department of Tongji Hospital between January 2011 to December 2020. Patients were divided into two groups: anti-SRP IMNM overlap SS group and anti-SRP IMNM control group. The clinical features, laboratory results, histological features, treatment, and prognosis were compared between the two groups.
    RESULTS: A total of 30 patients with anti-SRP IMNM were included, including six anti-SRP IMNM overlap SS patients (two males, four females), with a median age of 39 years, and 24 anti-SRP IMNM patients (ten males, fourteen females), with a median age of 46 years. The anti-SRP IMNM overlap SS group had a lower prevalence of muscle atrophy (0 vs 50%, p = 0.019), and a higher prevalence of extramuscular manifestations, including cardiac abnormalities and ILD (Interstitial lung disease). CD4 + and CD68 + inflammatory infiltrations were significantly increased in anti-SRP IMNM overlap SS patients, with an increased presence of CD4 + cells in both necrotic(p = 0.023) and endomysial areas (p = 0.013), and more CD68 + cells (p = 0.016) infiltrated the endomysial area. Deposition of membrane attack complex (MAC) on sarcolemma (p = 0.013) was more commonly seen in the anti-SRP IMNM overlap SS group.
    CONCLUSIONS: Our data revealed that anti-SRP IMNM-SS overlap patients may present with milder muscular manifestation, but worse extramuscular manifestations compared to anti-SRP IMNM patients without SS. CD4 + and CD68 + inflammatory infiltrations and MAC deposition were remarkably increased in anti-SRP IMNM-SS overlap patients.
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  • 文章类型: Journal Article
    背景:系统性硬化症相关肺动脉高压(SSc-PH)是系统性硬化症(SSc)患者死亡的最常见原因之一。SSc-PH患者的复杂性和临床特征的异质性导致诊断困难。因此,迫切需要开发和优化诊断SSc-PH的模型。已发现信号识别颗粒(SRP)缺乏促进多种癌症的进展,但SRP与SSc-PH之间的关系尚未探讨。方法:首先,我们从基因表达综合(GEO)数据库中获得了GSE19617和GSE33463数据集作为训练集,GSE22356作为测试装置,和来自MSigDB数据库的SRP相关基因集。接下来,我们鉴定了差异表达的SRP相关基因(DE-SRPGs),并进行了无监督聚类和基因富集分析.然后,我们使用最小绝对收缩和选择算子(LASSO)回归和支持向量机递归特征消除(SVM-RFE)来识别SRP相关诊断基因(SRP-DGs).我们基于SRP-DG构建了SRP评分系统和列线图模型,并建立了诊断的人工神经网络(ANN)。我们使用接收器工作特性(ROC)曲线来识别训练和测试集中与SRP相关的签名。最后,我们分析了免疫特征,信号通路,和与SRP相关的药物,并使用基于单基因批次相关分析的GSEA研究SRP-DGs的功能。结果:我们获得了30个DE-SRPG,发现它们在功能和途径上都有丰富的功能,如蛋白质靶向ER,“\”细胞溶质核糖体,“和”冠状病毒病-COVID-19“。随后,我们鉴定出7个SRP-DG,其表达水平和诊断效能在试验集中得到验证.作为一个签名,7个SRP-DG的ROC曲线下面积(AUC)值在训练和测试集中分别为0.769和1.000,分别。使用列线图模型做出的预测可能对SSc-PH患者有益。训练集和测试集的ANN的AUC值分别为0.999和0.860,分别。最后,我们发现一些免疫细胞和途径,如激活的树突状细胞,补体激活,和血红素代谢,与SRP-DG显著相关,并确定了10种靶向SRP-DG的药物。结论:我们构建了一个可靠的SRP相关ANN模型用于SSc-PH的诊断,并通过生物信息学方法探讨SRP在SSc-PH发病机制中的可能作用,为精准化、个体化用药提供依据。
    Background: Systemic sclerosis-associated pulmonary hypertension (SSc-PH) is one of the most common causes of death in patients with systemic sclerosis (SSc). The complexity of SSc-PH and the heterogeneity of clinical features in SSc-PH patients contribute to the difficulty of diagnosis. Therefore, there is a pressing need to develop and optimize models for the diagnosis of SSc-PH. Signal recognition particle (SRP) deficiency has been found to promote the progression of multiple cancers, but the relationship between SRP and SSc-PH has not been explored. Methods: First, we obtained the GSE19617 and GSE33463 datasets from the Gene Expression Omnibus (GEO) database as the training set, GSE22356 as the test set, and the SRP-related gene set from the MSigDB database. Next, we identified differentially expressed SRP-related genes (DE-SRPGs) and performed unsupervised clustering and gene enrichment analyses. Then, we used least absolute shrinkage and selection operator (LASSO) regression and support vector machine-recursive feature elimination (SVM-RFE) to identify SRP-related diagnostic genes (SRP-DGs). We constructed an SRP scoring system and a nomogram model based on the SRP-DGs and established an artificial neural network (ANN) for diagnosis. We used receiver operating characteristic (ROC) curves to identify the SRP-related signature in the training and test sets. Finally, we analyzed immune features, signaling pathways, and drugs associated with SRP and investigated SRP-DGs\' functions using single gene batch correlation analysis-based GSEA. Results: We obtained 30 DE-SRPGs and found that they were enriched in functions and pathways such as \"protein targeting to ER,\" \"cytosolic ribosome,\" and \"coronavirus disease-COVID-19\". Subsequently, we identified seven SRP-DGs whose expression levels and diagnostic efficacy were validated in the test set. As one signature, the area under the ROC curve (AUC) values for seven SRP-DGs were 0.769 and 1.000 in the training and test sets, respectively. Predictions made using the nomogram model are likely beneficial for SSc-PH patients. The AUC values of the ANN were 0.999 and 0.860 in the training and test sets, respectively. Finally, we discovered that some immune cells and pathways, such as activated dendritic cells, complement activation, and heme metabolism, were significantly associated with SRP-DGs and identified ten drugs targeting SRP-DGs. Conclusion: We constructed a reliable SRP-related ANN model for the diagnosis of SSc-PH and investigated the possible role of SRP in the etiopathogenesis of SSc-PH by bioinformatics methods to provide a basis for precision and personalized medicine.
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