ROI, Regions of interest

ROI,感兴趣的地区
  • 文章类型: Journal Article
    谵妄是老年人常见的术后神经系统并发症。尽管其患病率(14%-50%)和可能与炎症有关,术后谵妄的确切机制尚不清楚.该项目旨在表征小鼠和人类手术后的全身和中枢神经系统(CNS)炎症变化。匹配的血浆和脑脊液(CSF)样本来自“研究神经炎症潜在的术后脑连通性变化,术后认知功能障碍,老年人的谵妄”(INTUIT;NCT03273335)研究与小鼠终点进行了比较。使用5-选择系列反应时间测试(5-CSRTT)在老年小鼠中评价谵妄样行为。在FosTRAP报告小鼠中使用建立良好的骨科手术模型,我们检测到前额叶皮层的神经元变化,涉及注意力的领域,但尤其不是海马体。在老年小鼠中,血浆白细胞介素-6(IL-6),几丁质酶-3-样蛋白1(YKL-40),神经丝轻链(NfL)水平在骨科手术后增加,海马YKL-40表达降低。鉴于越来越多的证据表明YKL-40在谵妄和其他神经退行性疾病中的作用,我们检测了人血浆和脑脊液样本。血浆YKL-40水平在手术后同样增加,谵妄患者术后血浆YKL-40有增加的趋势。然而,手术后脑脊液中YKL-40水平下降,这与老鼠大脑中的发现平行。最后,我们证实了血脑屏障(BBB)的变化早在小鼠手术后9小时,这需要对人类手术后的BBB完整性进行更详细和急性的评估。一起,这些结果提供了对小鼠和人类术后谵妄的神经免疫相互作用的细致理解,并强调翻译生物标志物来测试潜在的细胞靶标和机制。
    Delirium is a common postoperative neurologic complication among older adults. Despite its prevalence (14%-50%) and likely association with inflammation, the exact mechanisms that underpin postoperative delirium are unclear. This project aimed to characterize systemic and central nervous system (CNS) inflammatory changes following surgery in mice and humans. Matched plasma and cerebrospinal fluid (CSF) samples from the \"Investigating Neuroinflammation Underlying Postoperative Brain Connectivity Changes, Postoperative Cognitive Dysfunction, Delirium in Older Adults\" (INTUIT; NCT03273335) study were compared to murine endpoints. Delirium-like behavior was evaluated in aged mice using the 5-Choice Serial Reaction Time Test (5-CSRTT). Using a well established orthopedic surgical model in the FosTRAP reporter mouse we detected neuronal changes in the prefrontal cortex, an area implicated in attention, but notably not in the hippocampus. In aged mice, plasma interleukin-6 (IL-6), chitinase-3-like protein 1 (YKL-40), and neurofilament light chain (NfL) levels increased after orthopedic surgery, but hippocampal YKL-40 expression was decreased. Given the growing evidence for a YKL-40 role in delirium and other neurodegenerative conditions, we assayed human plasma and CSF samples. Plasma YKL-40 levels were similarly increased after surgery, with a trend toward a greater postoperative plasma YKL-40 increase in patients with delirium. However, YKL-40 levels in CSF decreased following surgery, which paralleled the findings in the mouse brain. Finally, we confirmed changes in the blood-brain barrier (BBB) as early as 9 h after surgery in mice, which warrants more detailed and acute evaluations of BBB integrity following surgery in humans. Together, these results provide a nuanced understanding of neuroimmune interactions underlying postoperative delirium in mice and humans, and highlight translational biomarkers to test potential cellular targets and mechanisms.
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  • 文章类型: Journal Article
    在诊断2019年冠状病毒病(COVID-19)时,由于COVID-19和其他肺炎的图像特征相似,放射科医生无法做出准确的判断。随着机器学习的进步,人工智能(AI)模型在诊断COVID-19和其他肺炎方面显示出希望。我们进行了系统评价和荟萃分析,以评估模型的诊断准确性和方法学质量。
    我们搜索了PubMed,科克伦图书馆,WebofScience,和Embase,medRxiv和bioRxiv的预印本,以定位2021年12月之前发表的研究,没有语言限制。和质量评估(QUADAS-2),使用影像组学质量评分(RQS)工具和CLAIM检查表来评估每个研究的质量。我们使用随机效应模型来计算合并的敏感性和特异性,评估异质性的I2值,和Deeks'测试以评估发表偏差。
    我们从2001年检索的文章中筛选了32项研究,以纳入荟萃分析。我们将6737名参与者纳入测试或验证组。荟萃分析显示,基于胸部影像学的AI模型将COVID-19与其他肺炎区分开来:曲线下的合并面积(AUC)0.96(95%CI,0.94-0.98),灵敏度0.92(95%CI,0.88-0.94),合并特异性0.91(95%CI,0.87-0.93)。使用影像组学的13项研究的平均RQS评分为7.8,占总分的22%。使用深度学习方法的19项研究的CLAIM平均得分为20分,略低于理想得分为42.00分的一半(48.24%)。
    胸部成像的AI模型可以很好地诊断COVID-19和其他肺炎。然而,它尚未作为临床决策工具实施.未来的研究人员应该更加关注研究方法的质量,并进一步提高所开发预测模型的泛化性。
    UNASSIGNED: When diagnosing Coronavirus disease 2019(COVID-19), radiologists cannot make an accurate judgments because the image characteristics of COVID-19 and other pneumonia are similar. As machine learning advances, artificial intelligence(AI) models show promise in diagnosing COVID-19 and other pneumonias. We performed a systematic review and meta-analysis to assess the diagnostic accuracy and methodological quality of the models.
    UNASSIGNED: We searched PubMed, Cochrane Library, Web of Science, and Embase, preprints from medRxiv and bioRxiv to locate studies published before December 2021, with no language restrictions. And a quality assessment (QUADAS-2), Radiomics Quality Score (RQS) tools and CLAIM checklist were used to assess the quality of each study. We used random-effects models to calculate pooled sensitivity and specificity, I2 values to assess heterogeneity, and Deeks\' test to assess publication bias.
    UNASSIGNED: We screened 32 studies from the 2001 retrieved articles for inclusion in the meta-analysis. We included 6737 participants in the test or validation group. The meta-analysis revealed that AI models based on chest imaging distinguishes COVID-19 from other pneumonias: pooled area under the curve (AUC) 0.96 (95 % CI, 0.94-0.98), sensitivity 0.92 (95 % CI, 0.88-0.94), pooled specificity 0.91 (95 % CI, 0.87-0.93). The average RQS score of 13 studies using radiomics was 7.8, accounting for 22 % of the total score. The 19 studies using deep learning methods had an average CLAIM score of 20, slightly less than half (48.24 %) the ideal score of 42.00.
    UNASSIGNED: The AI model for chest imaging could well diagnose COVID-19 and other pneumonias. However, it has not been implemented as a clinical decision-making tool. Future researchers should pay more attention to the quality of research methodology and further improve the generalizability of the developed predictive models.
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  • 文章类型: Journal Article
    UNASSIGNED:准确预测局部晚期胃癌(LAGC)患者对新辅助化疗(NACT)的治疗反应对于个性化医疗至关重要。我们旨在开发和验证基于预处理对比增强计算机断层扫描(CT)图像和临床特征的深度学习影像组学列线图(DLRN),以预测LAGC患者对NACT的反应。
    UNASSIGNED:12月1日之间从四家中国医院回顾性招募了719名LAGC患者,2014年和11月30日,2020年。训练队列和内部验证队列(IVC),包括243名和103名患者,分别,从中心I随机选择;外部验证队列1(EVC1)包括来自中心II的207名患者;EVC2包括来自另外两家医院的166名患者。两个影像特征,反映了深度学习和手工制作的影像组学特征的表型,从预处理门静脉期CT图像构建。一个四步程序,包括再现性评估,单变量分析,LASSO方法,和多变量逻辑回归分析,被应用于特征选择和签名构建。然后开发综合DLRN,以增加成像特征对独立临床病理因素的价值,以预测对NACT的反应。在歧视方面评估了预测性能,校准,和临床有用性。使用基于DLRN的Kaplan-Meier存活曲线来估计随访队列(n=300)中的无病存活期(DFS)。
    UNASSIGNED:DLRN对NACT的良好反应表现出令人满意的辨别,并产生了0.829(95%CI,0.739-0.920)的受试者工作曲线下面积(AUC),0.804(95%CI,0.732-0.877),内部和两个外部验证队列中的0.827(95%CI,0.755-0.900),分别,在所有队列中具有良好的校准(p>0.05)。此外,DLRN的表现明显优于临床模型(p<0.001)。判定曲线剖析证实DLRN是临床有用的。此外,DLRN与LAGC患者的DFS显著相关(p<0.05)。
    UNASSIGNED:基于深度学习的影像组学列线图在预测LAGC患者的治疗反应和临床结果方面表现出了有希望的表现,这可以为个体化治疗提供有价值的信息。
    UNASSIGNED: Accurate prediction of treatment response to neoadjuvant chemotherapy (NACT) in individual patients with locally advanced gastric cancer (LAGC) is essential for personalized medicine. We aimed to develop and validate a deep learning radiomics nomogram (DLRN) based on pretreatment contrast-enhanced computed tomography (CT) images and clinical features to predict the response to NACT in patients with LAGC.
    UNASSIGNED: 719 patients with LAGC were retrospectively recruited from four Chinese hospitals between Dec 1st, 2014 and Nov 30th, 2020. The training cohort and internal validation cohort (IVC), comprising 243 and 103 patients, respectively, were randomly selected from center I; the external validation cohort1 (EVC1) comprised 207 patients from center II; and EVC2 comprised 166 patients from another two hospitals. Two imaging signatures, reflecting the phenotypes of the deep learning and handcrafted radiomics features, were constructed from the pretreatment portal venous-phase CT images. A four-step procedure, including reproducibility evaluation, the univariable analysis, the LASSO method, and the multivariable logistic regression analysis, was applied for feature selection and signature building. The integrated DLRN was then developed for the added value of the imaging signatures to independent clinicopathological factors for predicting the response to NACT. The prediction performance was assessed with respect to discrimination, calibration, and clinical usefulness. Kaplan-Meier survival curves based on the DLRN were used to estimate the disease-free survival (DFS) in the follow-up cohort (n = 300).
    UNASSIGNED: The DLRN showed satisfactory discrimination of good response to NACT and yielded the areas under the receiver operating curve (AUCs) of 0.829 (95% CI, 0.739-0.920), 0.804 (95% CI, 0.732-0.877), and 0.827 (95% CI, 0.755-0.900) in the internal and two external validation cohorts, respectively, with good calibration in all cohorts (p > 0.05). Furthermore, the DLRN performed significantly better than the clinical model (p < 0.001). Decision curve analysis confirmed that the DLRN was clinically useful. Besides, DLRN was significantly associated with the DFS of patients with LAGC (p < 0.05).
    UNASSIGNED: A deep learning-based radiomics nomogram exhibited a promising performance for predicting therapeutic response and clinical outcomes in patients with LAGC, which could provide valuable information for individualized treatment.
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  • 文章类型: Journal Article
    关于糖尿病肾病(DN)中组织特异性代谢重编程的详细知识对于更准确地理解分子病理学特征和开发新的治疗策略至关重要。在本研究中,提出了一种基于空气流动辅助解吸电喷雾电离(AFADESI)和基质辅助激光解吸电离(MALDI)整合质谱成像(MSI)的空间分辨代谢组学方法,以研究高脂饮食喂养和链脲佐菌素(STZ)治疗的DN大鼠肾脏的组织特异性代谢变化以及黄芪甲苷的治疗作用,一种潜在的抗糖尿病药物,对DN。因此,广泛的功能性代谢物,包括糖,氨基酸,核苷酸及其衍生物,脂肪酸,磷脂,鞘脂,甘油酯,肉碱及其衍生物,维生素,肽,并鉴定了与DN相关的金属离子,并以高化学特异性和高空间分辨率显示了它们在大鼠肾脏中的独特分布模式。通过反复口服黄芪甲苷(100mg/kg)12周可改善这些特定区域的代谢紊乱。这项研究提供了有关糖尿病大鼠肾脏组织特异性代谢重编程和分子病理学特征的更全面和详细信息。这些发现强调了AFADESI和MALDI整合的基于MSI的代谢组学方法在代谢性肾脏疾病中的应用潜力。
    Detailed knowledge on tissue-specific metabolic reprogramming in diabetic nephropathy (DN) is vital for more accurate understanding the molecular pathological signature and developing novel therapeutic strategies. In the present study, a spatial-resolved metabolomics approach based on air flow-assisted desorption electrospray ionization (AFADESI) and matrix-assisted laser desorption ionization (MALDI) integrated mass spectrometry imaging (MSI) was proposed to investigate tissue-specific metabolic alterations in the kidneys of high-fat diet-fed and streptozotocin (STZ)-treated DN rats and the therapeutic effect of astragaloside IV, a potential anti-diabetic drug, against DN. As a result, a wide range of functional metabolites including sugars, amino acids, nucleotides and their derivatives, fatty acids, phospholipids, sphingolipids, glycerides, carnitine and its derivatives, vitamins, peptides, and metal ions associated with DN were identified and their unique distribution patterns in the rat kidney were visualized with high chemical specificity and high spatial resolution. These region-specific metabolic disturbances were ameliorated by repeated oral administration of astragaloside IV (100 mg/kg) for 12 weeks. This study provided more comprehensive and detailed information about the tissue-specific metabolic reprogramming and molecular pathological signature in the kidney of diabetic rats. These findings highlighted the promising potential of AFADESI and MALDI integrated MSI based metabolomics approach for application in metabolic kidney diseases.
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  • 文章类型: Journal Article
    确定基于术前计算机断层扫描(CT)的影像组学分析是否可以预测脊柱骨巨细胞瘤(GCTB)的术后早期复发。
    在回顾性审查中,2008年3月至2018年2月,62例经病理证实为脊柱GCTB,最少随访24个月。已确定。平均随访73.7个月(范围,28.7-152.1个月)。临床信息包括年龄,性别,病变位置,多椎体受累,和手术方法,已获得。检索手术前获得的CT图像以进行影像组学分析。对于每种情况,手动勾勒出感兴趣的肿瘤区域(ROI),共提取了107个影像组学特征。通过使用支持向量机(SVM)的顺序选择过程来选择特征,然后用高斯核构建分类模型。通过ROC分析评估复发和未复发组之间的区别,使用10倍交叉验证。
    在62名患者中,17例复发,复发率为27.4%。两组之间的临床信息均无明显差异。与接受TES(6/26=23.1%)或病灶内脊椎切除术(5/20=25%)的患者相比,接受刮宫的患者的复发率更高(6/16=37.5%)。最终的影像组学模型是使用10个选定的特征建立的,其准确度为89%,AUC为0.78。
    基于术前CT开发的影像组学模型可以实现较高的准确性,以预测脊柱GCTB的复发。早期复发风险高的患者应更积极地治疗,以尽量减少复发。
    UNASSIGNED: To determine if radiomics analysis based on preoperative computed tomography (CT) can predict early postoperative recurrence of giant cell tumor of bone (GCTB) in the spine.
    UNASSIGNED: In a retrospective review, 62 patients with pathologically confirmed spinal GCTB from March 2008 to February 2018, with a minimum follow-up of 24 months, were identified. The mean follow-up was 73.7 months (range, 28.7-152.1 months). The clinical information including age, gender, lesion location, multi-vertebral involvement, and surgical methods, were obtained. CT images acquired before the operation were retrieved for radiomics analysis. For each case, the tumor regions of interest (ROI) was manually outlined, and a total of 107 radiomics features were extracted. The features were selected via the sequential selection process by using the support vector machine (SVM), then used to construct classification models with Gaussian kernels. The differentiation between recurrence and non-recurrence groups was evaluated by ROC analysis, using 10-fold cross-validation.
    UNASSIGNED: Of the 62 patients, 17 had recurrence with a recurrence rate of 27.4%. None of the clinical information was significantly different between the two groups. Patients receiving curettage had a higher recurrence rate (6/16 = 37.5%) compared to patients receiving TES (6/26 = 23.1%) or intralesional spondylectomy (5/20 = 25%). The final radiomics model was built using 10 selected features, which achieved an accuracy of 89% with AUC of 0.78.
    UNASSIGNED: The radiomics model developed based on pre-operative CT can achieve a high accuracy to predict the recurrence of spinal GCTB. Patients who have a high risk of early recurrence should be treated more aggressively to minimize recurrence.
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  • 文章类型: Journal Article
    Auditory hallucinations (AH), typically hearing voices, are a core symptom in schizophrenia. They may result from deficits in dynamic functional connectivity (FC) between cortical regions supporting speech production and language perception that interfere with the ability to recognize self-generated speech as not coming from external sources. We tested this hypothesis by investigating dynamic connectivity between the frontal cortex region related to language production and the temporal cortex region related to auditory processing.
    Resting-state fMRI scans were acquired from 18 schizophrenia patients with AH (AH+), 17 schizophrenia patients without AH (AH-) and 22 healthy controls. A multiband sequence with TR = 427 ms was adopted to provide relatively high temporal resolution data for characterizing dynamic FC. Analysis focused on connectivity between speech production and language comprehension areas, eloquent language cortex in the left hemisphere. Two frequency bands of brain oscillatory activity were evaluated (0.01-0.027 Hz, 0.027-0.08 Hz) in which differential alterations that have been previously linked to schizophrenia. Conventional static FC maps of these seeds were also calculated.
    Dynamic connectivity analysis indicated that AH+ patients showed not only less temporal variability but transient lower strength in connectivity between speech and auditory areas than healthy controls, while AH- patients not. These findings were restricted to 0.027-0.08 Hz activity. In static connectivity analysis, no significant differences were observed in connectivity between speech production and language comprehension areas in either frequency band.
    Reduced temporal variability and connectivity strength between key regions of eloquent language cortex may represent a mechanism for AH in schizophrenia.
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