RNA silencing

RNA 沉默
  • 文章类型: Journal Article
    病毒病原体不仅威胁人类和动物的健康和生命,而且还造成巨大的作物产量损失,并导致全球粮食不安全。为了抵御病毒病原体,植物已经进化出复杂的免疫系统来感知和应对这种攻击。尽管大多数基础研究都是在模型植物中进行的,最近对作物的研究为作物植物采用的抗病毒策略提供了新的见解。我们总结了在理解细胞受体的生物学作用方面的最新进展,RNA沉默,RNA衰变,激素信号,自噬,和泛素化操纵作物宿主介导的抗病毒反应。环状RNA的潜在功能,根际微生物组,植物-病毒相互作用中的植物叶面微生物组将是未来研究的重点方向。这些发现将有利于现代作物改良策略的制定。
    Viral pathogens not only threaten the health and life of humans and animals but also cause enormous crop yield losses and contribute to global food insecurity. To defend against viral pathogens, plants have evolved an intricate immune system to perceive and cope with such attacks. Although most of the fundamental studies were carried out in model plants, more recent research in crops has provided new insights into the antiviral strategies employed by crop plants. We summarize recent advances in understanding the biological roles of cellular receptors, RNA silencing, RNA decay, hormone signaling, autophagy, and ubiquitination in manipulating crop host-mediated antiviral responses. The potential functions of circular RNAs, the rhizosphere microbiome, and the foliar microbiome of crops in plant-virus interactions will be fascinating research directions in the future. These findings will be beneficial for the development of modern crop improvement strategies.
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  • 文章类型: Journal Article
    病毒抑制RNA沉默(VSR)对于成功感染至关重要。据报道,基于核苷酸结合和富含亮氨酸的重复序列(NLR)和自噬介导的免疫反应可靶向VSR作为反防御策略。这里,我们报道了蛋白精氨酸甲基转移酶6(PRMT6)介导的防御机制靶向VSR。PRMT6在番茄植株中的敲除和过表达导致疾病症状的增强和减少,分别,在番茄灌木特技病毒(TBSV)感染期间。PRMT6通过甲基化其关键精氨酸残基R43和R115与TBSVP19相互作用并抑制其VSR功能,从而降低其二聚化和小RNA结合活性。对自然番茄种群的分析表明,与高和低水平的PRMT6表达相关的两个主要等位基因与高和低水平的病毒抗性显着相关,分别。我们的研究确立了PRMT6介导的VSR精氨酸甲基化作为植物抗病毒免疫机制。
    Viral suppressor RNA silencing (VSR) is essential for successful infection. Nucleotide-binding and leucine-rich repeat (NLR)-based and autophagy-mediated immune responses have been reported to target VSR as counter-defense strategies. Here, we report a protein arginine methyltransferase 6 (PRMT6)-mediated defense mechanism targeting VSR. The knockout and overexpression of PRMT6 in tomato plants lead to enhanced and reduced disease symptoms, respectively, during tomato bush stunt virus (TBSV) infection. PRMT6 interacts with and inhibits the VSR function of TBSV P19 by methylating its key arginine residues R43 and R115, thereby reducing its dimerization and small RNA-binding activities. Analysis of the natural tomato population reveals that two major alleles associated with high and low levels of PRMT6 expression are significantly associated with high and low levels of viral resistance, respectively. Our study establishes PRMT6-mediated arginine methylation of VSR as a mechanism of plant immunity against viruses.
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  • 文章类型: Journal Article
    RNA沉默,保守的基因调控机制,对于宿主对病毒的抗性至关重要。液-液相分离(LLPS)是调节各种生物过程的重要机制。新兴研究表明,RNA解旋酶在通过LLPS产生microRNA(miRNA)中起重要作用。在这项研究中,我们研究了RNA解旋酶20(RH20)的功能作用,拟南芥中的DDX5同源物,RNA沉默和植物对病毒的抗性。我们的发现表明,RH20定位于细胞质和细胞核,在细胞质中形成斑点,表现出液-液相分离行为。我们证明RH20在植物抗病毒免疫中起积极作用。进一步的研究表明,RH20与Argonaute2(AGO2)相互作用,RNA沉默途径的关键组成部分。此外,RH20促进内源性和外源性小RNA(sRNA)的积累。总的来说,我们的研究确定RH20是一种新型的相分离蛋白,它与AGO2相互作用,影响sRNAs的积累,增强植物对病毒的抵抗力。
    RNA silencing, a conserved gene regulatory mechanism, is critical for host resistance to viruses. Liquid-liquid phase separation (LLPS) is an important mechanism in regulating various biological processes. Emerging studies suggest RNA helicases play important roles in microRNA (miRNA) production through LLPS. In this study, we investigated the functional role of RNA helicase 20 (RH20), a DDX5 homolog in Arabidopsis thaliana, in RNA silencing and plant resistance to viruses. Our findings reveal that RH20 localizes in both the cytoplasm and nucleus, with puncta formation in the cytoplasm exhibiting liquid-liquid phase separation behavior. We demonstrate that RH20 plays positive roles in plant immunity against viruses. Further study showed that RH20 interacts with Argonaute 2 (AGO2), a key component of the RNA silencing pathway. Moreover, RH20 promotes the accumulation of both endogenous and exogenous small RNAs (sRNAs). Overall, our study identifies RH20 as a novel phase separation protein that interacting with AGO2, influencing sRNAs accumulation, and enhancing plant resistance to viruses.
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  • 文章类型: Journal Article
    柑橘是至少八种类病毒的天然宿主,为研究类病毒之间的相互作用提供了一个自然的平台。后者表现为拮抗或协同现象。柑橘类病毒之间的拮抗作用直观地导致柑橘类病毒引起的症状减少,而协同效应导致症状严重程度增加。互动现象复杂而有趣,深入了解这种类病毒相互作用的潜在机制对预防和控制类病毒疾病具有重要意义。本文综述了近年来柑橘类病毒的研究进展,关注相互作用现象,分析其相互作用机制。指出了宿主RNA沉默机制和类病毒来源的siRNA(vd-siRNA)的核心作用,并对今后的研究方向提出了建议。
    Citrus is the natural host of at least eight viroid species, providing a natural platform for studying interactions among viroids. The latter manifests as antagonistic or synergistic phenomena. The antagonistic effect among citrus viroids intuitively leads to reduced symptoms caused by citrus viroids, while the synergistic effect leads to an increase in symptom severity. The interaction phenomenon is complex and interesting, and a deep understanding of the underlying mechanisms induced during this viroid interaction is of great significance for the prevention and control of viroid diseases. This paper summarizes the research progress of citrus viroids in recent years, focusing on the interaction phenomenon and analyzing their interaction mechanisms. It points out the core role of the host RNA silencing mechanism and viroid-derived siRNA (vd-siRNA), and provides suggestions for future research directions.
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  • 文章类型: Journal Article
    烟草病毒是一组对全世界农作物构成重大威胁的植物病毒。在这次审查中,我们专注于植物对烟草流感病毒的免疫,包括模式触发免疫(PTI),效应子触发免疫(ETI),RNA靶向途径,植物激素,活性氧(ROS),和自噬。Further,我们重点介绍了植物育种中抗烟草莫病毒的遗传资源,并讨论了植物保护抗烟草莫病毒的未来方向。
    Tobamoviruses are a group of plant viruses that pose a significant threat to agricultural crops worldwide. In this review, we focus on plant immunity against tobamoviruses, including pattern-triggered immunity (PTI), effector-triggered immunity (ETI), the RNA-targeting pathway, phytohormones, reactive oxygen species (ROS), and autophagy. Further, we highlight the genetic resources for resistance against tobamoviruses in plant breeding and discuss future directions on plant protection against tobamoviruses.
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  • 文章类型: Journal Article
    RNA silencing (or RNA interference, RNAi) is a conserved mechanism for regulating gene expression in eukaryotes, which plays vital roles in plant development and response to biotic and abiotic stresses. The discovery of trans-kingdom RNAi and interspecies RNAi provides a theoretical basis for exploiting RNAi-based crop protection strategies. Here, we summarize the canonical RNAi mechanisms in plants and review representative studies associated with plant-pathogen interactions. Meanwhile, we also elaborate upon the principles of host-induced gene silencing, spray-induced gene silencing and microbe-induced gene silencing, and discuss their applications in crop protection, thereby providing help to establish novel RNAi-based crop protection strategies.
    RNA沉默是真核生物基因表达调控的保守机制,在植物生长发育以及响应生物和非生物胁迫过程中发挥着非常重要的作用。跨界RNA沉默与种间RNA沉默为开发基于RNA沉默的作物病害防控体系提供了理论基础。本文概括了植物RNA沉默保守途径,归纳了RNA沉默在植物-病原互作研究中的代表性研究,阐述了基于RNA沉默开发的宿主诱导基因沉默、喷施诱导基因沉默和微生物诱导基因沉默技术的原理,以及应用研究现状,以期为开发基于RNA沉默的新型作物病害防控技术提供参考。.
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  • 文章类型: Journal Article
    7-脱氢胆固醇(7-DHC)是用于生物合成蜕皮激素的关键中间产物。这是通过由细胞色素P450的万圣节家族催化的一系列羟基化反应来实现的。梦幻岛是一种酶催化蜕皮类固醇途径的第一个反应,将膳食胆固醇转化为7-DHC。然而,缺乏对直翅目昆虫的梦幻岛生理功能的研究。在这项研究中,克隆并分析了蝗虫的梦幻岛(LmNvd)。LmNvd主要在前胸腺中表达,在第五龄若虫的第6天和第7天高度表达。RNAi介导的LmNvd沉默导致严重的蜕皮延迟和异常表型,可以通过补充7-DHC和20-羟基蜕皮激素来挽救。苏木精和伊红染色结果表明,RNAi介导的LmNvd沉默通过促进新表皮的合成和抑制旧表皮的降解来干扰蜕皮过程。实时定量PCR结果表明,敲除LmNvd后,E75早期基因和几丁质酶5基因的mRNA表达下降,几丁质合酶1基因的mRNA表达明显上调。我们的结果表明,LmNvd参与了蜕皮激素的生物合成过程,它参与调节几丁质的合成和蜕皮循环中的降解。
    7-dehydrocholesterol (7-DHC) is a key intermediate product used for biosynthesis of molting hormone. This is achieved through a series of hydroxylation reactions catalyzed by the Halloween family of cytochrome P450s. Neverland is an enzyme catalyzes the first reaction of the ecdysteroidogenic pathway, which converts dietary cholesterol into 7-DHC. However, research on the physiological function of neverland in orthopteran insects is lacking. In this study, neverland from Locusta migratoria (LmNvd) was cloned and analyzed. LmNvd was mainly expressed in the prothoracic gland and highly expressed on days 6 and 7 of fifth instar nymphs. RNAi-mediated silencing of LmNvd resulted in serious molting delays and abnormal phenotypes, which could be rescued by 7-DHC and 20-hydroxyecdysone supplementation. Hematoxylin and eosin staining results showed that RNAi-mediated silencing of LmNvd disturbed the molting process by both promoting the synthesis of new cuticle and suppressing the degradation of the old cuticle. Quantitative real-time PCR results suggested that the mRNA expression of E75 early gene and chitinase 5 gene decreased and that of chitin synthase 1 gene was markedly upregulated after knockdown of LmNvd. Our results suggest that LmNvd participates in the biosynthesis process of molting hormone, which is involved in regulating chitin synthesis and degradation in molting cycles.
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  • 文章类型: Journal Article
    RNA干扰,或者RNA沉默,是植物抵抗类病毒感染的重要防御机制。植物编码多种DICER样(DCL)蛋白,它们是RNA沉默途径的关键组分。然而,不同DCL在对抗类病毒感染的防御反应中的作用尚不清楚.这里,我们使用SlDCL2b功能丧失番茄突变体植物确定了番茄DCL2b(SlDCL2b)在抵抗马铃薯纺锤体块茎类病毒(PSTVd)感染的防御反应中的功能。与野生型植物相比,突变植物更容易受到PSTVd感染,早期出现更严重的症状并积累更高水平的PSTVdRNA。此外,我们验证了miR6026调节SlDCL2b表达的反馈机制。番茄miR6026的功能性阻断,通过表达其目标模拟物,能增强番茄植株对PSTVd侵染的抗性。这些发现加深了对基于RNAi的抗类病毒感染的当前理解,并为类病毒控制提供了潜在的新策略。
    RNA interference, or RNA silencing, is an important defence mechanism against viroid infection in plants. Plants encode multiple DICER-LIKE (DCL) proteins that are key components of the RNA silencing pathway. However, the roles of different DCLs in defence responses against viroid infection remain unclear. Here, we determined the function of tomato DCL2b (SlDCL2b) in defence responses against potato spindle tuber viroid (PSTVd) infection using SlDCL2b loss-of-function tomato mutant plants. Compared with wild-type plants, mutant plants were more susceptible to PSTVd infection, developing more severe symptoms earlier and accumulating higher levels of PSTVd RNAs. Moreover, we verified the feedback mechanism for the regulation of SlDCL2b expression by miR6026. Functional blocking of tomato miR6026, by expressing its target mimics, can enhance resistance to PSTVd infection in tomato plants. These findings deepen the current understanding of RNAi-based resistance against viroid infection and provide a potentially new strategy for viroid control.
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  • 文章类型: Journal Article
    柑橘褪绿矮化相关病毒(CCDaV)是一种与卷叶相关的经济上重要的柑橘病毒,变形,以及在中国发现的萎黄病。植物已经进化出RNA沉默来防御病毒感染;然而,CCDaV抑制柑橘RNA沉默的机制尚不清楚.
    使用pCHF3载体在烟草benthamiana16c中异位表达由CCDaV编码的六种蛋白质以鉴定RNA沉默抑制活性。
    CCDaV编码的V2蛋白抑制了GFPRNA引发的局部RNA沉默和系统性RNA沉默,但不妨碍N.benthamiana16c中RNA沉默信号的短距离移动。GFP荧光观察表明,V2蛋白抑制RNA沉默的能力弱于番茄丛生特技病毒P19。缺失分析表明,推定的核定位信号(NLS,25-54aa)与V2蛋白的RNA沉默抑制活性有关。此外,V2蛋白不能阻断dsRNA触发的RNA沉默。亚细胞定位实验表明,V2蛋白定位于本氏芽孢杆菌的细胞核。
    总的来说,这项研究的结果表明,CCDaV-V2具有沉默抑制活性。这是第一个报道的由Citlodavirus编码的RNA沉默抑制剂,对于揭示CCDaV感染的分子机制具有重要意义。
    UNASSIGNED: Citrus chlorotic dwarf-associated virus (CCDaV) is an economically important citrus virus associated with leaf curling, deformation, and chlorosis found in China. Plants have evolved RNA silencing to defend against viral infections; however, the mechanism by which CCDaV suppresses RNA silencing in citrus remains unknown.
    UNASSIGNED: Six proteins encoded by CCDaV were ectopically expressed in Nicotiana benthamiana 16c using the pCHF3 vector to identify RNA-silencing suppression activities.
    UNASSIGNED: V2 protein encoded by CCDaV suppressed local RNA silencing and systemic RNA silencing triggered by GFP RNA, but did not impede short-distance movement of the RNA silencing signal in N. benthamiana 16c. GFP fluorescence observations showed that the ability of V2 protein to suppress RNA silencing was weaker than tomato bushy stunt virus P19. Deletion analysis showed that the putative nuclear localization signal (NLS, 25-54 aa) was involved in the RNA silencing suppression activity of V2 protein. Furthermore, V2 protein cannot block dsRNA-triggered RNA silencing. The subcellular localization assay suggested that V2 protein was localized to nucleus of N. benthamiana.
    UNASSIGNED: Overall, the results of this study demonstrate that CCDaV-V2 acts as an activity of silencing suppression. This is the first reported RNA-silencing suppressor encoded by Citlodavirus and will be valuable in revealing the molecular mechanism of CCDaV infection.
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  • 文章类型: Journal Article
    柑橘类病毒(CEVd)和柑橘树皮裂解类病毒(CBCVd)是两种重要的类病毒,它们感染柑橘植物,并且经常在果园中以混合感染的形式发生。然而,混合感染中两种类病毒之间的拮抗机制尚不清楚.使用CEVd/CBCVd-citron系统和小RNA测序(sRNA-seq)来研究拮抗作用。当CBCVd在CEVd之前接种时,CEVd滴度显著降低,症状减轻.来自CEVd和CBCVd的病毒衍生的sRNA(vd-sRNA)的长度主要是21个核苷酸(nt)和22nt,并且具有相似的5'碱基偏差。末端右侧(TR)区域中两个类病毒的同源序列富含vd-sRNAs,选自CBCVdTR区的高频vd-sRNA可用于体内直接降解CEVd的转录本。这些结果表明,RNA沉默可能在两种类病毒的拮抗中起重要作用。从而加深了我们对木本植物中长链非编码RNA分子相互作用的理解。
    Citrus exocortis viroid (CEVd) and citrus bark cracking viroid (CBCVd) are two important viroids that infect citrus plants and frequently occur as mixed infections in orchards. However, the mechanism of antagonism between the two viroids in mixed infections remains unclear. The CEVd/CBCVd-citron system and small RNA sequencing (sRNA-seq) were used to study the antagonism. When CBCVd was inoculated before CEVd, the CEVd titre was significantly reduced and the symptoms were attenuated. Viroid-derived sRNAs (vd-sRNAs) from CEVd and CBCVd were predominantly 21-nucleotide (nt) and 22-nt in length and had similar 5\' base biases. Homologous sequences of the two viroids in the terminal right (TR) region are rich in vd-sRNAs, and the high frequency vd-sRNAs selected from the CBCVd TR region can be used to degrade the transcripts of CEVd in vivo directly. These results suggest that RNA silencing may play an important role in the antagonism of the two viroids, thus deepening our understanding of the molecular interaction of long noncoding RNAs in woody plants.
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