Mitochondrial DNA

线粒体 DNA
  • 文章类型: Journal Article
    骨骼肌衰老和肌肉减少症导致衰老标志物水平的相似变化。然而,很少有研究从衰老的角度研究癌症肌肉减少症。因此,这项研究调查了癌症肌肉减少症的衰老,并探讨了其在体外和体内的原因。在小鼠衰老中,体外恶病质,和老鼠恶病质模型,骨骼肌在衰老标志物包括氧化应激方面表现出相似的变化,纤维化,肌肉分化潜能降低,端粒缩短。此外,对骨骼肌线粒体DNA的检查显示主弧有5kb的缺失;复合物I的截断,IV,和电子传输链中的V;和减少的氧化磷酸化(OXPHOS)。小鼠恶病质模型显示癌性腹水中高水平的高迁移率组box-1(HMGB1)和肿瘤坏死因子-α(TNFα)。在该模型中连续施用抗HMGB1和TNFα的中和抗体减少了氧化应激并消除了线粒体DNA缺失。这些结果表明,在癌症中,炎症细胞因子引起的线粒体氧化应激导致线粒体DNA损伤,这反过来导致OXPHOS降低和促进衰老。
    Skeletal muscle aging and sarcopenia result in similar changes in the levels of aging markers. However, few studies have examined cancer sarcopenia from the perspective of aging. Therefore, this study investigated aging in cancer sarcopenia and explored its causes in vitro and in vivo. In mouse aging, in vitro cachexia, and mouse cachexia models, skeletal muscles showed similar changes in aging markers including oxidative stress, fibrosis, reduced muscle differentiation potential, and telomere shortening. Furthermore, examination of mitochondrial DNA from skeletal muscle revealed a 5 kb deletion in the major arc; truncation of complexes I, IV, and V in the electron transport chain; and reduced oxidative phosphorylation (OXPHOS). The mouse cachexia model demonstrated high levels of high-mobility group box-1 (HMGB1) and tumor necrosis factor-α (TNFα) in cancer ascites. Continuous administration of neutralizing antibodies against HMGB1 and TNFα in this model reduced oxidative stress and abrogated mitochondrial DNA deletion. These results suggest that in cancer sarcopenia, mitochondrial oxidative stress caused by inflammatory cytokines leads to mitochondrial DNA damage, which in turn leads to decreased OXPHOS and the promotion of aging.
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  • 文章类型: Journal Article
    低迁移树突状细胞(DC)水平对癌症免疫监视构成挑战,然而,它们对肿瘤免疫状态和免疫治疗反应的影响尚不清楚.我们提供了临床证据,将降低的迁移DC水平与免疫冷肿瘤状态联系起来,导致患者预后不佳。为了解决这个问题,我们开发了一种基于自体DC的纳米接种策略,使用患者来源的类器官或癌细胞裂解物脉冲阳离子纳米粒子(cNPs)加载免疫原性DC来源的微泡(cNPancercell@MVDC).这种方法转化了免疫冷肿瘤,增加迁徙DC,激活T细胞和自然杀伤细胞,减少肿瘤生长,并提高原位胰腺癌和肺癌模型的生存率,超越传统方法。体内成像显示肿瘤和淋巴结中的上cNP癌细胞@MVDC积聚,促进免疫细胞浸润。机械上,cNPs富集线粒体DNA,增强cGAS-STING介导的DC活化和迁移。我们的策略将冷肿瘤转移到热状态,增强抗肿瘤免疫力,用于潜在的个性化癌症治疗。
    Low migratory dendritic cell (DC) levels pose a challenge in cancer immune surveillance, yet their impact on tumor immune status and immunotherapy responses remains unclear. We present clinical evidence linking reduced migratory DC levels to immune-cold tumor status, resulting in poor patient outcomes. To address this, we develop an autologous DC-based nanovaccination strategy using patient-derived organoid or cancer cell lysate-pulsed cationic nanoparticles (cNPs) to load immunogenic DC-derived microvesicles (cNPcancer cell@MVDC). This approach transforms immune-cold tumors, increases migratory DCs, activates T cells and natural killer cells, reduces tumor growth, and enhances survival in orthotopic pancreatic and lung cancer models, surpassing conventional methods. In vivo imaging reveals superior cNPcancer cell@MVDC accumulation in tumors and lymph nodes, promoting immune cell infiltration. Mechanistically, cNPs enrich mitochondrial DNA, enhancing cGAS-STING-mediated DC activation and migration. Our strategy shifts cold tumors to a hot state, enhancing antitumor immunity for potential personalized cancer treatments.
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  • 文章类型: Journal Article
    Hydatigerakamiyai(H.kamiyai)是Hydatigera中的一个新物种,最近已复活。田鼠和猫是H.kamiyai的寄主,对其健康和经济有一定影响。此外,青藏高原(QTP)是代表地球生物多样性的研究热点,由于其独特的地理环境和气候条件支持了各种哺乳动物的生长,并为各种寄生虫完成其生活史提供了有利条件。这项研究的目的是使用形态学和分子方法揭示从QTP上的Neodonfuscus分离的H.kamiyai菌株的系统发育关系和分歧时间。在这项研究中,我们在形态学上观察了H.kamiyai,并对整个线粒体基因组进行了测序。然后,我们用最大似然(ML)和贝叶斯推断(BI)方法构建了系统发育树。选择GTR替代模型进行发散时间分析。这些数据表明结果与Hydatigera的一般形态特征一致。H.kamiyai的全基因组大小为13822bp,A+T含量(73%)大于G+C含量(27%)。Ka/Ks值均<1,表明所有13个PCGs在演化过程中都经历了纯化选择。基于13个PCG生成的系统发育树,COI,18SrRNA和28SrRNA揭示了H.kamiyai和Hydatigera之间的亲缘关系,具有对关系的高节点支持。基于13个PCGs的发散时间表明,H.kamiyai大约在1,130万年前(Mya)在新世发散。有趣的是,它的发散晚于QTP快速抬升期。我们还推测,由于QTP隆起带来的有利生活条件,H.kamiyai分化是由宿主分化引起的。由于对H.kamiyai线粒体基因组的研究相对较少,我们的研究可以为H.kamiyai在QTP上的进一步研究提供事实支持。我们还强调了对其东道国进行进一步研究的重要性,Neodonfuscus和猫,这对于进一步理解H.kamiyai的生命周期将是重要的。
    Hydatigera kamiyai (H. kamiyai) is a new species within Hydatigera that has recently been resurrected. Voles and cats are hosts of H. kamiyai and have a certain impact on its health and economy. Moreover, the Qinghai-Tibetan plateau (QTP) is a research hotspot representing Earth\'s biodiversity, as its unique geographical environment and climatic conditions support the growth of a variety of mammals and provide favorable conditions for various parasites to complete their life history. The aim of this study was to reveal the phylogenetic relationships and divergence times of H. kamiyai strains isolated from Neodon fuscus on the QTP using morphological and molecular methods. In this study, we morphologically observed H. kamiyai and sequenced the whole mitochondrial genome. Then, we constructed phylogenetic trees with the maximum likelihood (ML) and Bayesian inference (BI) methods. The GTR alternative model was selected for divergence time analysis. These data demonstrated that the results were consistent with the general morphological characteristics of Hydatigera. The whole genome of H. kamiyai was 13,822 bp in size, and the A + T content (73%) was greater than the G + C content (27%). The Ka/Ks values were all <1, indicating that all 13 protein-coding genes (13 PCGs) underwent purifying selection during the process of evolution. The phylogenetic tree generated based on the 13 PCGs, cytochrom oxidase subunit I (COI), 18S rRNA and 28S rRNA revealed close phylogenetic relationships between H. kamiyai and Hydatigera, with high node support for the relationship. The divergence time based on 13 PCGs indicated that H. kamiyai diverged approximately 11.3 million years ago (Mya) in the Miocene. Interestingly, it diverged later than the period of rapid uplift in the QTP. We also speculated that H. kamiyai differentiation was caused by host differentiation due to the favorable living conditions brought about by the uplift of the QTP. As there have been relatively few investigations on the mitochondrial genome of H. kamiyai, our study could provide factual support for further studies of H. kamiyai on the QTP. We also emphasized the importance of further studies of its hosts, Neodon fuscus and cats, which will be important for further understanding the life cycle of H. kamiyai.
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  • 文章类型: Journal Article
    了解濒危物种的遗传多样性模式对于保护生物多样性至关重要。濒临灭绝的the鱼HynobiusYiwuensis,大陆和浙江舟山岛特有,中国,由于栖息地的丧失,人口急剧下降。然而,遗传多样性的水平和模式,分化,对西武士的种群结构了解甚少。这里,我们根据从七个地区收集的111个个体的部分mtDNA序列(Cytb和CO1),探索了伊武士的遗传多样性和系统地理学。检测到相对较高的整体单倍型多样性(h=0.965)和较低的核苷酸多样性(π=0.013)。我们的结果,通过系统发育树和单倍型网络分析,揭示了两个不同的单倍群,大陆和岛屿,估计的发散时间表明它们在大约244万年前发散,恰逢舟山岛与大陆分离的时期。
    Understanding the genetic diversity patterns of endangered species is crucial for biodiversity conservation. The endangered salamander Hynobius yiwuensis, endemic to the mainland and Zhoushan Island in Zhejiang, China, has suffered from sharp population declines due to habitat loss. However, the levels and patterns of genetic diversity, differentiation, and population structure of H. yiwuensis remain poorly understood. Here, we explored the genetic diversity and phylogeography of H. yiwuensis based on partial mtDNA sequences (Cytb and CO1) through 111 individuals collected from seven localities. Relatively high overall haplotype diversity (h = 0.965) and low nucleotide diversity (π = 0.013) were detected. Our results, through phylogenetic trees and haplotype network analyses, revealed two divergent haplogroups, mainland and island, and the estimated divergence time indicated they diverged ~2.44 million years ago, which coincided with the period when Zhoushan Island became separated from the mainland.
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  • 文章类型: Journal Article
    这项研究分析了石虎窑墓葬出土的马遗骸中的古代DNA。这些发现可追溯到新疆汉唐时期(大约2200至1100年前)。获得两个高质量的线粒体基因组并使用下一代测序进行分析。基因组被分成两个母体单倍群,B和D,根据一项包括欧亚大陆古代和当代样本的研究。根据原始马单倍型G1,唐代马与Akhal-Teke马之间观察到了紧密的遗传亲和力。历史证据表明,古代丝绸之路在其传播中起着至关重要的作用。此外,获得了Akhal-Teke马的母系历史,并表明该品种的早期驯化是出于军事目的。
    This study analyzed ancient DNA from the remains of horses unearthed from the Shihuyao tombs. These were found to date from the Han and Tang Dynasties in Xinjiang (approximately 2200 to 1100 years ago). Two high-quality mitochondrial genomes were acquired and analyzed using next-generation sequencing. The genomes were split into two maternal haplogroups, B and D, according to a study that included ancient and contemporary samples from Eurasia. A close genetic affinity was observed between the horse of the Tang Dynasty and Akhal-Teke horses according to the primitive horse haplotype G1. Historical evidence suggests that the ancient Silk Road had a vital role in their dissemination. Additionally, the matrilineal history of the Akhal-Teke horse was accessed and suggested that the early domestication of the breed was for military purposes.
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  • 文章类型: Journal Article
    线粒体DNA(mtDNA)的遗传改变与射精的人精子的进行性运动(PR)和快速进行性运动(A级)之间的关系尚不清楚。在这项研究中,我们通过分析mtDNA拷贝数来探索人类mtDNA基因型与精子PR和A级之间的关联,基因座,单倍群,重排,删除,以及重复和精子运动参数。人类精子mtDNA拷贝数,基因座和单倍群与人类精子活力PR或A级无关。然而,PR和A级比率高的参与者的人类精子mtDNA重排(包括缺失和重复)的累积频率高于PR和A级比率低的参与者.需要更多的研究来了解mtDNA基因型之间的关系,包括删除和重复,和人类精子活力。
    The relationship between genetic alterations in mitochondrial DNA (mtDNA) and progressive motility (PR) and rapid progressive motility (grade A) of ejaculated human spermatozoa remains unclear. In this study, we explored the association between human mtDNA genotype and sperm PR and grade A by analyzing mtDNA copy number, loci, haplogroup, rearrangement, deletions, and duplications and sperm motility parameters. Human sperm mtDNA copy number, loci and haplogroups were not associated with human sperm motility PR or A grade. However, the cumulative frequency of human sperm mtDNA rearrangements (including deletions and duplications) in participants with high PR and grade A ratio was higher than in participants with low PR and grade A ratio. Additional studies are needed to understand the relationship between mtDNA genotypes, including deletions and duplications, and human sperm motility.
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  • 文章类型: Journal Article
    背景:先前的研究表明,线粒体DNA(mtDNA)的遗传突变与感觉神经性听力损失(SNHL)有关。然而,线粒体12SrRNA(MT-RNR1)变异与人群听力损失之间的明确关联尚未得到很好的确定,特别是在亚洲。这项回顾性队列研究的目的是评估台湾患者MT-RNR1变异与SNHL风险之间的关系。
    方法:该队列包括2003年1月至2020年12月来自台湾的306,068名参与者。参与者根据遗传变异进行分类,特别是线粒体突变(rs267606618,rs267606619,rs267606617)。MT-RNR1变异病例与非突变患者按年龄1:10匹配,性别,访问年,不包括那些预先存在听力损失的人。主要终点是SNHL,使用特定的ICD-TM代码识别,阳性预测值为90%。通过医院的自我报告或电子病历确定药物暴露史。Cox比例风险回归模型用于评估MT-RNR1变异与听力损失之间的关联。调整各种协变量。Kaplan-Meier存活曲线和log-rank检验比较了组间听力损失发生率。
    结果:mtDNA变异组的平均年龄为32.4岁,标准差为19.2年。突变组的听力损失发生率为36.42/10,000人年(95%置信区间[CI],27.21-47.73),高于野生型组的23.77/10,000人年(95%CI,21.32-26.42)(p=0.0036)。此外,糖尿病与MT-RNR1变异个体发生SNHL的风险增加相关(调整后的风险比=1.76[95%CI,1.00-3.09],p<0.05)。
    结论:这项研究强调了携带MT-RNR1变体的患者听力损失的风险增加,尤其是糖尿病患者。整合遗传和临床数据的未来研究对于开发更精确的干预措施来监测和治疗这一弱势群体的听力损失至关重要。
    BACKGROUND: Previous studies have implicated inherited mutations in mitochondrial DNA (mtDNA) in sensorineural hearing loss (SNHL). However, the definitive association between mitochondrial 12S rRNA (MT-RNR1) variants and hearing loss in the population has not been well established, particularly in Asia. The objective of this retrospective cohort study was to assess the association between MT-RNR1 variants and the risk of SNHL in patients in Taiwan.
    METHODS: The cohort included 306,068 participants from Taiwan between January 2003 and December 2020. Participants were classified based on genetic variants, particularly mitochondrial mutations (rs267606618, rs267606619, rs267606617). MT-RNR1 variant cases were matched 1:10 with non-mutant patients by age, gender, and visit year, excluding those with pre-existing hearing loss. The primary endpoint was SNHL, identified using specific ICD-TM codes with a 90% positive predictive value. Medication exposure history was determined via self-report or electronic medical records in the hospital. Cox proportional hazard regression models were used to assess the association between MT-RNR1 variants and hearing loss, adjusting for various covariates. Kaplan-Meier survival curves and log-rank tests compared hearing loss incidence between groups.
    RESULTS: The mean age of the mtDNA variants group is 32.4 years, with a standard deviation of 19.2 years. The incidence density of hearing loss for the mutation group was 36.42 per 10,000 person-years (95% Confidence Interval [CI], 27.21-47.73), which was higher than the 23.77per 10,000 person-years (95% CI, 21.32-26.42) in the wild-type group (p = 0.0036). Additionally, diabetes mellitus was associated with an increased risk of developing SNHL in individuals with MT-RNR1 variants (adjusted hazard ratio = 1.76 [95% CI, 1.00-3.09], p < 0.05).
    CONCLUSIONS: This study highlights the increased risk of hearing loss in patients carrying MT-RNR1 variants, particularly those with diabetes mellitus. Future research that integrates genetic and clinical data is crucial for developing more precise interventions to monitor and treat hearing loss in this vulnerable population.
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  • 文章类型: Journal Article
    邻苯二甲酸二丁酯(DBP)是一种广泛使用的增塑剂,分散在各种环境中,造成严重的污染和健康风险。近年来对DBP的毒性机制进行了探讨,而线粒体DNA(mtDNA)对DBP暴露的敏感性以及由此产生的损伤仍不清楚。在这项研究中,母本斑马鱼暴露于环境相关浓度的DBP中0、2、4和6周.结果显示,DBP暴露损害健康状况,导致身长和体重减少,条件因子,肝细胞指数,和性腺指数。此外,DBP暴露以时间依赖性方式诱导了g和肝脏中的氧化应激和ATP缺乏。在不同组织中评估了D环和ND1区域的氧化mtDNA(ox-mtDNA)水平,显示不同的反应模式。高耗能组织如心脏,大脑,吉尔,肝脏对线粒体损伤的易感性升高,在短期内,ox-mtDNA水平迅速增加。相反,在肌肉中,子房,鸡蛋,和后代,ox-mtDNA在暴露期间逐渐积累。值得注意的是,血液D-loop区域的ox-mtDNA水平显示出对DBP暴露的迅速反应,便于评价。此外,孵化率下降,死亡率增加,脂过氧化,母亲DBP暴露后,后代游泳表现不佳,提示母体mtDNA的遗传性损伤。这些发现强调了ox-mtDNA作为环境污染的方便生物标志物的潜力,协助水生环境的生态风险评估和预警系统。
    Dibutyl phthalate (DBP) is a widely-used plasticizer that is dispersed in various environments, causing significant pollution and health risks. The toxic mechanism of DBP has been discussed in recent years, while the susceptibility of mitochondrial DNA (mtDNA) to DBP exposure and the resulting damage remain unclear. In this study, maternal zebrafish were exposed to environmentally relevant concentration of DBP for 0, 2, 4, and 6 weeks. Results showed that DBP exposure impaired health status, leading to the reduced body length and weight, condition factor, hepatosomatic index, and gonadosomatic index. Furthermore, DBP exposure induced oxidative stress and ATP deficiency in the gill and liver in a time-dependent manner. The oxidized mtDNA (ox-mtDNA) levels in the D-loop and ND1 regions were assessed in different tissues, showing distinct response patterns. The high energy-consuming tissues such as heart, brain, gill, and liver exhibited elevated susceptibility to mitochondrial damage, with a rapid increase in ox-mtDNA levels in the short term. Conversely, in muscle, ovary, eggs, and offspring, ox-mtDNA gradually accumulated over the exposure period. Notably, the ox-mtDNA levels in the D-loop region of blood showed a prompt response to DBP exposure, making it convenient for evaluation. Additionally, decreased hatching rates, increased mortality, lipoperoxidation, and depressed swimming performance were observed in offspring following maternal DBP exposure, suggesting the inherited impairments of maternal mtDNA. These findings highlight the potential for ox-mtDNA to serve as a convenient biomarker for environmental contamination, aiding in ecological risk assessment and forewarning systems in aquatic environment.
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  • 文章类型: Journal Article
    紫菜(Perrier,1872),一种用于中药(广迪龙)的自然资源,具有很高的经济价值,在中国南方丘陵地区的森林和农田生境中广泛分布。研究曲霉菌的遗传分化程度和多样性,使用线粒体基因COI对来自中国南方75个地点的157个样本进行了群体遗传结构研究,COII,12SrRNA,16SrRNA,和NDI。结果表明曲霉菌具有较高的遗传多样性,种群内的变异是总变异的主要来源。使用系统发育树和单倍型网络分析检测到六个深度不同的线粒体进化枝(I-VI)。这一发现得到了高木村两参数遗传距离和基于COI基因获得的成对固定指数值的支持。未观察到明显的系统地理结构。分支II的广泛地理分布,IV,和VI根据多重分析结果提出了最近的人口扩张。这些结果包括高水平的Hd和低的π,星形单倍型网络结构,具有大量较低频率的单倍型,显著为负的中性测试值,和单峰失配分布模式。祖先区的发散时间估计和重建表明,曲霉菌起源于广西,并在上新世早期经历了最初的种内多样化,产生了进化枝I。在更新世期间,它逐渐向东分散并迅速分化为II-V进化枝。云贵高原,南岭和武夷山可能成为曲霉向西部和北部传播的地理屏障。
    Amynthas aspergillum (Perrier, 1872), a natural resource used in traditional Chinese medicine (Guang-dilong) with high economic value, is widely distributed in forests and farmland habitats in the hilly areas of southern China. To investigate the extent of genetic differentiation and diversity in A. aspergillum, a population genetic structure study was performed on 157 samples from 75 locations in southern China using the mitochondrial genes COI, COII, 12S rRNA, 16S rRNA, and NDI. The results indicated that A. aspergillum had a high level of genetic diversity, and variation within populations was the main source of the total variation. Six deeply divergent mitochondrial clades (I-VI) were detected using both phylogenetic tree and haplotype network analyses. This finding was supported by the high Kimura two-parameter genetic distance and the pairwise fixation index value obtained based on the COI gene. No significant phylogeographic structures were observed. The widespread geographic distribution of clades II, IV, and VI suggested a recent demographic expansion based on multiple analysis results. These results include a high level of Hd and low π, star-shaped haplotype network structures with a high number of less frequent haplotypes, significantly negative neutrality test values, and a unimodal mismatch distribution pattern. The divergence time estimates and reconstruction of the ancestral area revealed that A. aspergillum originated in Guangxi Province and underwent initial intraspecific diversification in the early Pliocene to generate clade I. Then, it gradually dispersed eastward and rapidly differentiated into clades II-V during the Pleistocene. The Yunnan-Guizhou Plateau and Nanling and Wuyi Mountains might act as geographical barriers for the spread of A. aspergillum to the west and north.
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  • 文章类型: Journal Article
    线粒体DNA(mtDNA)G-四链体(G4s)在能量代谢、然而,它们的具体职能和基本监管机制尚未界定。使用化学遗传筛选策略,我们证明JAK/STAT3通路是低氧癌细胞中mtDNAG4动力学的主要调控机制.进一步的蛋白质组学分析显示JAK/STAT3通路的激活促进RelA的易位,NF-κB家族的一员,线粒体,其中RelA与mtDNAG4s结合并促进其折叠,导致mtDNA不稳定性增加,抑制mtDNA转录,以及随后的线粒体功能障碍。这种结合事件破坏了能量代谢的平衡,催化有利于糖酵解的代谢转变。总的来说,这些结果为癌细胞通过代谢重编程适应缺氧的策略提供了见解.
    Mitochondrial DNA (mtDNA) G-quadruplexes (G4s) have important regulatory roles in energy metabolism, yet their specific functions and underlying regulatory mechanisms have not been delineated. Using a chemical-genetic screening strategy, we demonstrated that the JAK/STAT3 pathway is the primary regulatory mechanism governing mtDNA G4 dynamics in hypoxic cancer cells. Further proteomic analysis showed that activation of the JAK/STAT3 pathway facilitates the translocation of RelA, a member of the NF-κB family, to the mitochondria, where RelA binds to mtDNA G4s and promotes their folding, resulting in increased mtDNA instability, inhibited mtDNA transcription, and subsequent mitochondrial dysfunction. This binding event disrupts the equilibrium of energy metabolism, catalyzing a metabolic shift favoring glycolysis. Collectively, the results provide insights into a strategy employed by cancer cells to adapt to hypoxia through metabolic reprogramming.
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