Fetal MRI

胎儿 MRI
  • 文章类型: Journal Article
    尽管深度学习已经实现了自动医学图像分割的最先进性能,它通常需要大量的像素级手动注释来进行训练。获得这些高质量的注释非常耗时,并且需要专业知识,这阻碍了依赖于此类注释来训练具有良好分割性能的模型的广泛应用。使用涂鸦注释可以大大降低注释成本,但由于监管不足,往往会导致细分性能不佳。在这项工作中,我们提出了一个名为ScribSD+的新框架,该框架基于多尺度知识蒸馏和类式对比正则化,用于从涂鸦注释中学习。对于由涂鸦和基于指数移动平均(EMA)的教师监督的学生网络,我们首先介绍了多尺度预测水平知识蒸馏(KD),它利用教师网络的软预测在多个尺度上监督学生,然后提出类对比正则化,鼓励同一类内的特征相似性和不同类之间的差异,从而有效提高学生网络的分割性能。用于心脏结构分割的ACDC数据集和用于胎盘和胎儿脑分割的胎儿MRI数据集上的实验结果表明,我们的方法显着提高了学生的表现,并且优于五种最先进的涂鸦监督学习方法。因此,该方法有可能降低开发用于临床诊断的深度学习模型的注释成本。
    Despite that deep learning has achieved state-of-the-art performance for automatic medical image segmentation, it often requires a large amount of pixel-level manual annotations for training. Obtaining these high-quality annotations is time-consuming and requires specialized knowledge, which hinders the widespread application that relies on such annotations to train a model with good segmentation performance. Using scribble annotations can substantially reduce the annotation cost, but often leads to poor segmentation performance due to insufficient supervision. In this work, we propose a novel framework named as ScribSD+ that is based on multi-scale knowledge distillation and class-wise contrastive regularization for learning from scribble annotations. For a student network supervised by scribbles and the teacher based on Exponential Moving Average (EMA), we first introduce multi-scale prediction-level Knowledge Distillation (KD) that leverages soft predictions of the teacher network to supervise the student at multiple scales, and then propose class-wise contrastive regularization which encourages feature similarity within the same class and dissimilarity across different classes, thereby effectively improving the segmentation performance of the student network. Experimental results on the ACDC dataset for heart structure segmentation and a fetal MRI dataset for placenta and fetal brain segmentation demonstrate that our method significantly improves the student\'s performance and outperforms five state-of-the-art scribble-supervised learning methods. Consequently, the method has a potential for reducing the annotation cost in developing deep learning models for clinical diagnosis.
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  • 文章类型: Review
    背景:根据产前超声检查,单脐动脉可单独存在或与其他胎儿异常相关。到目前为止,膀胱外翻的确切发病机制尚不清楚。一些学者认为,膀胱外翻和泄殖腔外翻应被视为疾病谱,以探讨其发病机理。如果将膀胱外翻和泄殖腔外翻视为相同的疾病谱,那么我们可以推测单脐动脉应该有同时伴有膀胱外翻的概率。
    方法:第一次,我们报道了一例罕见的单脐动脉妊娠胎儿膀胱外翻病例。该患者在怀孕26周时接受了针对性彩色多普勒超声检查,首次怀疑膀胱外翻,单脐动脉和胎儿MRI在怀孕383周时进行诊断,证实了怀疑。确诊后,患者被安排进行多学科讨论.最终,患者选择在怀孕38+5周诱导胎儿死亡,胎儿死亡的身体外观确认了先前的超声和MRI检查结果。
    结论:我们的报告是单胎妊娠中首次发现单脐动脉合并膀胱外翻。因此,我们的病例增强了泄殖腔外翻和膀胱外翻应该被视为相同疾病谱的证据。此外,我们对单脐动脉合并膀胱外翻的诊断进展进行了文献综述,希望能为该病的诊断提供有益的参考。
    BACKGROUND: According to prenatal ultrasonographic studies, single umbilical artery may be present alone or in association with other fetal abnormalities. So far, the exact pathogenesis of bladder exstrophy is unclear. Some scholars believe that bladder exstrophy and cloacal exstrophy should be regarded as a disease spectrum to explore their pathogenesis. If bladder exstrophy and cloacal exstrophy are regarded as the same disease spectrum, then we can speculate that the single umbilical artery should have the probability of being accompanied by bladder exstrophy at the same time.
    METHODS: For the first time, we report a rare case of fetal bladder exstrophy with single umbilical artery in single pregnancy. This patient underwent targeted color Doppler ultrasound at 26 weeks of pregnancy which first suspected bladder exstrophy with single umbilical artery and fetal MRI for diagnosis at 38 + 3 weeks of pregnancy which confirmed the suspicion. After the diagnosis was confirmed, the patient was scheduled for a multidisciplinary discussion. Ultimately the patient opted for induced fetal demise at 38 + 5 weeks of pregnancy and the physical appearance of the fetal demise affirmed previous ultrasound and MRI examination results.
    CONCLUSIONS: Our report is the first finding of single umbilical artery combined with bladder exstrophy in a singleton pregnancy. Accordingly, our case enhances the evidence that cloacal exstrophy and bladder exstrophy should be treated as the same disease spectrum. In addition, we conducted a literature review on the diagnostic progress of single umbilical artery combined with bladder exstrophy, hoping to provide useful references for the diagnosis of this disease.
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  • 文章类型: Journal Article
    背景:基于胎儿脑磁共振成像(MRI)的胎龄预测已被广泛用于表征正常胎儿脑发育和诊断先天性脑畸形。
    目的:胎儿位置和外部干扰的不确定性导致胎儿大脑的位置和方向可变。此外,孕妇通常在胎儿异常扫描周专注于接受MRI扫描,导致胎儿脑MRI数据的不平衡分布。上述问题对基于深度学习的胎脑MRI胎龄预测提出了很大的挑战。
    方法:在本研究中,提出了一种金字塔挤压注意力(PSA)引导的动态特征融合CNN(PDFF-CNN),用于根据不平衡数据集上的胎儿脑MRI图像来可靠地预测胎龄。PDFF-CNN包含四个组件:转换模块,特征提取模块,动态特征融合模块,和平衡均方误差(MSE)损失。通过使用PSA来使用变换和特征提取模块来学习并行权重共享暹罗网络中的多尺度和多方向特征表示。动态特征融合模块自动学习在特征提取模块中生成的特征向量的权重,以动态融合多尺度和多方向的脑沟和回旋特征。考虑到不平衡数据集的事实,平衡MSE损失用于减轻不平衡数据分布对胎龄预测性能的负面影响。
    结果:对来自157名受试者的1327个常规临床T2加权MRI图像的不平衡胎儿脑MRI数据集进行评估,PDFF-CNN实现了有希望的胎龄预测性能,总体平均绝对误差为0.848周,R2为0.904。此外,得出了PDFF-CNN的注意力激活图,揭示了在每个妊娠阶段有助于预测孕龄的区域特征。
    结论:这些结果表明,拟议的PDFF-CNN可能在指导治疗干预和分娩计划方面具有广泛的临床适用性。这可能有助于产前诊断。
    BACKGROUND: Fetal brain magnetic resonance imaging (MRI)-based gestational age prediction has been widely used to characterize normal fetal brain development and diagnose congenital brain malformations.
    OBJECTIVE: The uncertainty of fetal position and external interference leads to variable localization and direction of the fetal brain. In addition, pregnant women typically concentrate on receiving MRI scans during the fetal anomaly scanning week, leading to an imbalanced distribution of fetal brain MRI data. The above-mentioned problems pose great challenges for deep learning-based fetal brain MRI gestational age prediction.
    METHODS: In this study, a pyramid squeeze attention (PSA)-guided dynamic feature fusion CNN (PDFF-CNN) is proposed to robustly predict gestational ages from fetal brain MRI images on an imbalanced dataset. PDFF-CNN contains four components: transformation module, feature extraction module, dynamic feature fusion module, and balanced mean square error (MSE) loss. The transformation and feature extraction modules are employed by using the PSA to learn multiscale and multi-orientation feature representations in a parallel weight-sharing Siamese network. The dynamic feature fusion module automatically learns the weights of feature vectors generated in the feature extraction module to dynamically fuse multiscale and multi-orientation brain sulci and gyri features. Considering the fact of the imbalanced dataset, the balanced MSE loss is used to mitigate the negative impact of imbalanced data distribution on gestational age prediction performance.
    RESULTS: Evaluated on an imbalanced fetal brain MRI dataset of 1327 routine clinical T2-weighted MRI images from 157 subjects, PDFF-CNN achieved promising gestational age prediction performance with an overall mean absolute error of 0.848 weeks and an R 2 $R^2$ of 0.904. Furthermore, the attention activation maps of PDFF-CNN were derived, which revealed regional features that contributed to gestational age prediction at each gestational stage.
    CONCLUSIONS: These results suggest that the proposed PDFF-CNN might have broad clinical applicability in guiding treatment interventions and delivery planning, which has the potential to be helpful with prenatal diagnosis.
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  • 文章类型: Journal Article
    胎儿脑组织分割对于量化发育中胎儿先天性疾病的存在至关重要。手工分割胎儿脑组织既繁琐又费时,所以使用自动分割方法可以大大简化过程。此外,胎儿的大脑在整个怀孕期间经历了各种各样的变化,比如大脑容量增加,神经元迁移,和突触发生。在这种情况下,组织之间的对比,尤其是在灰质和白质之间,在整个怀孕期间不断变化,增加了我们细分的复杂性和难度。为了减轻手动细化分割的负担,提出了一种新的基于深度学习的分割方法。我们的方法利用了一种新颖的注意力结构块,上下文变压器块(CoT块),将其应用于编码器-解码器的骨干网络模型中,以指导动态注意矩阵的学习并增强图像特征提取。此外,在解码器的最后一层,我们引入了一个混合扩张卷积模块,可以扩展感受野并保留详细的空间信息,有效地提取胎儿脑MRI中的全局上下文信息。我们根据几个性能指标对我们的方法进行了定量评估:骰子,精度,灵敏度,和特异性。在80个胎龄从20到35周的胎儿脑部MRI扫描中,我们得到的平均骰子相似系数(DSC)为83.79%,平均体积相似度(VS)为84.84%,平均Hausdorff95距离(HD95)为35.66mm。我们还使用了几种先进的深度学习分割模型在等价条件下进行比较,结果表明,我们的方法优于其他方法,并表现出良好的分割性能。
    Fetal brain tissue segmentation is essential for quantifying the presence of congenital disorders in the developing fetus. Manual segmentation of fetal brain tissue is cumbersome and time-consuming, so using an automatic segmentation method can greatly simplify the process. In addition, the fetal brain undergoes a variety of changes throughout pregnancy, such as increased brain volume, neuronal migration, and synaptogenesis. In this case, the contrast between tissues, especially between gray matter and white matter, constantly changes throughout pregnancy, increasing the complexity and difficulty of our segmentation. To reduce the burden of manual refinement of segmentation, we proposed a new deep learning-based segmentation method. Our approach utilized a novel attentional structural block, the contextual transformer block (CoT-Block), which was applied in the backbone network model of the encoder-decoder to guide the learning of dynamic attentional matrices and enhance image feature extraction. Additionally, in the last layer of the decoder, we introduced a hybrid dilated convolution module, which can expand the receptive field and retain detailed spatial information, effectively extracting the global contextual information in fetal brain MRI. We quantitatively evaluated our method according to several performance measures: dice, precision, sensitivity, and specificity. In 80 fetal brain MRI scans with gestational ages ranging from 20 to 35 weeks, we obtained an average Dice similarity coefficient (DSC) of 83.79%, an average Volume Similarity (VS) of 84.84%, and an average Hausdorff95 Distance (HD95) of 35.66 mm. We also used several advanced deep learning segmentation models for comparison under equivalent conditions, and the results showed that our method was superior to other methods and exhibited an excellent segmentation performance.
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  • 文章类型: Journal Article
    脑提取是胎儿神经图像分析的基本先决条件。由于周围的母体组织和不可预测的运动,从胎儿磁共振(MR)图像中提取大脑是一项具有挑战性的任务。在本文中,我们提出了一种新颖的基于深度学习的多步骤框架,用于从3D胎儿MR图像中提取大脑。第一步,全球定位网络被用来估计大脑候选人的概率图。连接成分标记算法用于消除小的错误成分并精确定位候选大脑区域。第二步,在大脑候选区域实施局部细化网络以获得细粒度的概率图。最终提取结果是通过融合网络得出的,该融合网络具有从前两个步骤获得的两个级联概率图。实验结果表明,与现有的基于深度学习的方法相比,我们提出的方法具有更好的性能。
    Brain extraction is a fundamental prerequisite step in neuroimage analysis for fetus. Due to surrounding maternal tissues and unpredictable movement, brain extraction from fetal Magnetic Resonance (MR) images is a challenging task. In this paper, we propose a novel deep learning-based multi-step framework for brain extraction from 3D fetal MR images. In the first step, a global localization network is applied to estimate probability maps for brain candidates. Connected-component labeling algorithm is applied to eliminate small erroneous components and accurately locate the candidate brain area. In the second step, a local refinement network is implemented in the brain candidate area to obtain fine-grained probability maps. Final extraction results are derived by a fusion network with the two cascaded probability maps obtained from previous two steps. Experimental results demonstrate that our proposed method has superior performance compared with existing deep learning-based methods.
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  • 文章类型: Journal Article
    胎粪腹膜炎(MP)是一种罕见的胎儿疾病,需要紧急识别以进行手术干预。我们报告了一系列35例产前通过磁共振成像(MRI)诊断为MP的患者,说明影像学发现,并调查这些发现对产后管理的预测价值。
    回顾性纳入了2013年至2018年在我们机构出生的诊断为MP的患者的连续队列。分析产前超声和MRI表现。Fisher精确概率检验用于评估MRI对手术组和非手术组之间手术干预的预测价值。
    腹水(30/35)和扩张肠环(27/35)是胎儿MRI上最常见的两种与MP相关的产前发现。在35个婴儿中,26例接受手术干预。所有MRI扫描显示肠扩张(14/26,p=0.048)和微结肠直肠(13/26,p=0.013)的胎儿都需要手术。两组胎粪假性囊肿和腹膜钙化的胎儿数量无明显差异。
    在MRI上有肠道扩张和微结肠直肠的胎儿可能需要产后手术干预。只有少量腹水和轻微肠管扩张的婴儿可能会接受保守治疗。
    Meconium peritonitis (MP) is a rare fetal disease that needs to be urgently identified for surgical intervention. We report a series of 35 patients diagnosed prenatally with MP by magnetic resonance imaging (MRI), illustrate the imaging findings and investigate the predictive value of these findings for postpartum management.
    A consecutive cohort of patients diagnosed with MP who were born at our institution from 2013 to 2018 was enrolled retrospectively. The prenatal ultrasound and MRI findings were analyzed. Fisher\'s exact probability test was used to evaluate the predictive value of MRI for surgical intervention between the operative group and the nonoperative group.
    Ascites (30/35) and distended bowel loops (27/35) were two of the most common prenatal MP-related findings on fetal MRI. Of the 35 infants, 26 received surgical intervention. All fetuses with MRI scans showing bowel dilatation (14/26, p = 0.048) and micro-colorectum (13/26, p = 0.013) required surgery. There were no significant differences in the number of fetuses with meconium pseudocysts and peritoneal calcifications between the two groups.
    Fetuses with bowel dilatation and micro-colorectum on MRI may need postpartum surgical intervention. Infants with only a small amount of ascites and slight bowel distention were likely to receive conservative treatment.
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  • 文章类型: Journal Article
    从2D切片的多个运动破坏堆叠的高分辨率体积重建对于胎儿脑磁共振成像(MRI)研究起着越来越重要的作用。当前现有的重建方法是耗时的,并且通常需要用户交互来从多个2D切片堆叠中定位和提取大脑。我们提出了一个全自动的胎儿脑重建框架,包括四个阶段:1)基于卷积神经网络(CNN)的粗分割的胎儿脑定位,2)由另一个用多尺度损失函数训练的CNN进行精细分割,3)新颖,单参数离群鲁棒超分辨率重建,和4)适用于病理性大脑的标准解剖空间中的快速和自动高分辨率可视化。我们使用来自具有正常大脑的胎儿的图像以及与开放性脊柱裂相关的不同程度的脑室增宽来验证我们的框架,先天性畸形也会影响大脑。实验表明,我们提出的管道的每个步骤在分割和重建比较(包括专家读者质量评估)方面都优于最先进的方法。我们提出的方法的重建结果与手动获得的结果相比具有优势,劳动密集型大脑分割,这揭示了自动胎儿脑重建研究在临床实践中的潜在用途。
    High-resolution volume reconstruction from multiple motion-corrupted stacks of 2D slices plays an increasing role for fetal brain Magnetic Resonance Imaging (MRI) studies. Currently existing reconstruction methods are time-consuming and often require user interactions to localize and extract the brain from several stacks of 2D slices. We propose a fully automatic framework for fetal brain reconstruction that consists of four stages: 1) fetal brain localization based on a coarse segmentation by a Convolutional Neural Network (CNN), 2) fine segmentation by another CNN trained with a multi-scale loss function, 3) novel, single-parameter outlier-robust super-resolution reconstruction, and 4) fast and automatic high-resolution visualization in standard anatomical space suitable for pathological brains. We validated our framework with images from fetuses with normal brains and with variable degrees of ventriculomegaly associated with open spina bifida, a congenital malformation affecting also the brain. Experiments show that each step of our proposed pipeline outperforms state-of-the-art methods in both segmentation and reconstruction comparisons including expert-reader quality assessments. The reconstruction results of our proposed method compare favorably with those obtained by manual, labor-intensive brain segmentation, which unlocks the potential use of automatic fetal brain reconstruction studies in clinical practice.
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  • 文章类型: Journal Article
    To assess the accuracy of prenatal diagnosis and the prognosis of fetal-abdominal masses, we reviewed all of the cases which had been diagnosed as having abdominal masses from January 2014 to December 2016. In total, 264 cases were identified as having abdominal masses. Among them, 141 cases (53%) had received specific prenatal diagnoses by prenatal ultrasound (US). MRI had assisted in the diagnosis and prognostic evaluation in 69 cases, increasing the diagnostic rate to 65%. The prenatal diagnoses of 111 cases (65%) were concordant with the postnatal diagnoses. Surgical intervention after birth was needed in 96 cases (39%). Most outcomes were good (89%). We suggest that prenatal US can detect and identify most fetal abdominal masses and that MRI helps to further describe the masses. With early intervention after birth, the prognosis was good in most cases. Impact Statement What is already known on this subject? Fetal-abdominal masses are commonly detected in antenatal examinations. A prenatal ultrasound is the main screening tool for detecting fetal intra-abdominal cystic lesions. What the results of this study add? We suggest that MRI is more helpful in some systems to reveal locations and structures. Even prenatal diagnosis cannot reach before birth, prognosis is quite good and expectant therapy is sufficient. What the implications are of these findings for clinical practice and/or future research? Our data strengthens the current knowledge of fetal abdominal masses to help relieve anxious parents by telling them that this congenital malformation has good outcomes. But multidiscipline consultation is necessary.
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  • 文章类型: Case Reports
    介绍3例Galen动脉瘤样畸形(VGAMs)的胎儿静脉,通过磁共振成像(MRI)诊断,并突出这些心血管发现。
    我们回顾性分析了3例妊娠31、32和33周时使用VGAM的胎儿。MRI观察喂养动脉和引流静脉。评估了由病变中的高血流量引起的脑继发性变化和高输出心力衰竭。两个胎儿出生了,并进行新生儿MRI检查。一个胎儿被终止。
    每个胎儿大脑中线的特征性扩张结构。动静脉瘘导致脑部解剖变化,例如在脑积水中,扩张喂养血管(一个或多个),颈静脉,和/或上腔静脉。在两个胎儿中观察到大量头臂血管扩张。分娩后,一个婴儿有新生儿窒息和鼻窦血栓形成,MRI显示缺氧缺血性脑病。在所有三例病例中均检测到心脏肥大。
    视野大,胎儿MRI可以观察脑VGAM,以及心脏和受影响的大血管。它可以确定脑积水,缺血,颅内出血,和鼻窦血栓形成.提供有关婴儿全身的此类信息可以帮助临床医生确定最合适的治疗方法。
    4J.Magn.雷森。影像2017;46:1535-1539。
    To present three fetal vein of Galen aneurysmal malformations (VGAMs), which were diagnosed through magnetic resonance imaging (MRI), and highlight these cardiovascular findings.
    We retrospectively reviewed three fetuses with VGAM at 31, 32, and 33 weeks of gestation. Feeding arteries and draining veins were observed by MRI. Secondary changes in the brain and high-output heart failure caused by high blood flow in the lesion were evaluated. Two fetuses were born, and neonatal MRI was performed. One fetus was terminated.
    A characteristic dilated structure in the midline of the brain presented in each fetus. The arteriovenous fistula led to anatomical brain changes such as in the hydrocephalus, dilated feeding vessels (one or more), jugular vein, and/or superior vena cava. Substantial brachiocephalic vessel dilation was observed in two fetuses. Following parturition, one baby had neonatal asphyxia and sinus thrombosis, and MRI revealed hypoxic-ischemic encephalopathy. Cardiomegaly was detected in all three cases.
    With a large field of view, fetal MRI can observe brain VGAM, as well as the heart and affected large vessels. It can determine hydrocephalus, ischemia, intracranial hemorrhage, and sinus thrombosis. Providing such information on the infant\'s entire body can aid clinicians in determining the most appropriate treatment.
    4 J. Magn. Reson. Imaging 2017;46:1535-1539.
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  • 文章类型: Journal Article
    During the second trimester, the human fetal brain undergoes numerous changes that lead to substantial variation in the neonatal in terms of its morphology and tissue types. As fetal MRI is more and more widely used for studying the human brain development during this period, a spatiotemporal atlas becomes necessary for characterizing the dynamic structural changes. In this study, 34 postmortem human fetal brains with gestational ages ranging from 15 to 22 weeks were scanned using 7.0 T MR. We used automated morphometrics, tensor-based morphometry and surface modeling techniques to analyze the data. Spatiotemporal atlases of each week and the overall atlas covering the whole period with high resolution and contrast were created. These atlases were used for the analysis of age-specific shape changes during this period, including development of the cerebral wall, lateral ventricles, Sylvian fissure, and growth direction based on local surface measurements. Our findings indicate that growth of the subplate zone is especially striking and is the main cause for the lamination pattern changes. Changes in the cortex around Sylvian fissure demonstrate that cortical growth may be one of the mechanisms for gyration. Surface deformation mapping, revealed by local shape analysis, indicates that there is global anterior-posterior growth pattern, with frontal and temporal lobes developing relatively quickly during this period. Our results are valuable for understanding the normal brain development trajectories and anatomical characteristics. These week-by-week fetal brain atlases can be used as reference in in vivo studies, and may facilitate the quantification of fetal brain development across space and time.
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