EF Hand Motifs

EF 手形图案
  • 文章类型: Journal Article
    背景:肾素-血管紧张素-醛固酮系统(RAAS)过度激活与心血管疾病(CVD)高度相关,Gαq-PLCβ3轴作为RAAS的核心节点。PLCβ3是心血管疾病的潜在靶点,缺乏抑制剂限制了其药物开发。
    目的:芥子碱(SP)是治疗心血管疾病的潜在先导化合物。因此,我们旨在阐明SP对Gαq-PLCβ3轴的调节及其分子机制。
    方法:采用醛固酮增多症和高血压动物模型,研究SP通过Gαq-PLCβ3轴对RAAS异常激活的抑制作用。我们使用化学生物学方法来识别潜在的靶标并阐明潜在的分子机制。
    方法:使用我们实验室建立的动物模型评估SP对醛固酮增多症和高血压的影响。使用基于活性的蛋白质谱分析与生物正交点击化学反应和其他生化方法进行靶标鉴定和潜在的分子机制研究。
    结果:SP通过靶向PLCβ3减轻动物模型的醛固酮增多症和高血压。阻断Gαq-PLCβ3相互作用的潜在机制涉及通过Asn-260氨基酸残基靶向EF手。在心血管系统中,SP比Gαq-GEFT或Gαq-PKCζ轴更精确地调节Gαq-PLCβ3轴。
    结论:SP通过靶向PLCβ3EF手域,通过Gαq-PLCβ3相互作用阻断缓解RAAS过度激活,提供了一种用于治疗CVD的新型PLC抑制剂。与选择性Gαq抑制剂不同,与Gαq抑制剂相比,SP降低了治疗CVD的副作用风险。
    BACKGROUND: The renin-angiotensin-aldosterone system (RAAS) over-activation is highly involved in cardiovascular diseases (CVDs), with the Gαq-PLCβ3 axis acting as a core node of RAAS. PLCβ3 is a potential target of CVDs, and the lack of inhibitors has limited its drug development.
    OBJECTIVE: Sinapine (SP) is a potential leading compound for treating CVDs. Thus, we aimed to elucidate the regulation of SP towards the Gαq-PLCβ3 axis and its molecular mechanism.
    METHODS: Aldosteronism and hypertension animal models were employed to investigate SP\'s inhibitory effect on the abnormal activation of the RAAS through the Gαq-PLCβ3 axis. We used chemical biology methods to identify potential targets and elucidate the underlying molecular mechanisms.
    METHODS: The effects of SP on aldosteronism and hypertension were evaluated using an established animal model in our laboratory. Target identification and underlying molecular mechanism research were performed using activity-based protein profiling with a bio-orthogonal click chemistry reaction and other biochemical methods.
    RESULTS: SP alleviated aldosteronism and hypertension in animal models by targeting PLCβ3. The underlying mechanism for blocking the Gαq-PLCβ3 interaction involves targeting the EF hands through the Asn-260 amino acid residue. SP regulated the Gαq-PLCβ3 axis more precisely than the Gαq-GEFT or Gαq-PKCζ axis in the cardiovascular system.
    CONCLUSIONS: SP alleviated RAAS over-activation via Gαq-PLCβ3 interaction blockade by targeting the PLCβ3 EF hands domain, which provided a novel PLC inhibitor for treating CVDs. Unlike selective Gαq inhibitors, SP reduced the risk of side effects compared to Gαq inhibitors in treating CVDs.
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  • 文章类型: Journal Article
    Rv1211是结核分枝杆菌中保守的假想蛋白,是细菌生长和发病所必需的。该蛋白已被认为是具有EF手基序的钙调蛋白样钙结合蛋白,并作为三氟拉嗪的靶标,真核生物中抑制分枝杆菌生长的钙调蛋白拮抗剂。这里,我们表达了Rv1211的重组蛋白,并对Rv1211及其与Ca2或三氟拉嗪的相互作用进行了结构和生化研究。令人惊讶的是,Rv1211表现出天然未折叠蛋白质的典型洗脱特性。随后的温度升高和三氟乙醇处理的圆二色性实验表明,Rv1211具有未折叠的结构。另外的NMR实验证实了蛋白质的未折叠状态,并进一步表明它不与Ca2+结合。尽管如此,Rv1211确实与三氟拉嗪结合,如15N标记的Rv1211的二维NMR光谱所证明的。然而,结合时没有峰移,表明即使在三氟拉嗪结合后,Rv1211仍保持其未折叠状态。参与结合的残基聚集在C端区域,由序列分配标识。等温滴定量热法显示,三氟哌嗪-Rv1211结合的Kd为41μM,化学计量为1:2(Rv1211:三氟哌嗪)。我们的结果反对Rv1211作为Ca2结合钙调蛋白样蛋白的建议,并显示Rv1211是一种与三氟拉嗪结合的天然未折叠蛋白。此外,我们的结果提示了Rv1211-三氟拉嗪相互作用中的“模糊性”的证据,该相互作用不同于传统的结合诱导的天然未折叠蛋白的折叠.
    Rv1211 is a conserved hypothetical protein in Mycobacterium tuberculosis and is required for the growth and pathogenesis of the bacteria. The protein has been suggested as a calmodulin-like calcium-binding protein with an EF-hand motif and as a target of trifluoperazine, a calmodulin antagonist in eukaryotes that inhibits mycobacterial growth. Here, we expressed the recombinant protein of Rv1211 and performed structural and biochemical studies of Rv1211 and its interaction with Ca2+ or trifluoperazine. Surprisingly, Rv1211 exhibited an elution property typical of a natively unfolded protein. Subsequent circular dichroism experiments with temperature elevation and trifluoroethanol treatment showed that Rv1211 has unfolded structure. Additional NMR experiment confirmed the unfolded state of the protein and further showed that it does not bind to Ca2+. Still, Rv1211 did bind to trifluoperazine, as evidenced by the two-dimensional NMR spectra of 15N-labeled Rv1211. However, there were no peak shifts upon binding, showing that Rv1211 retained its unfolded state even after the trifluoperazine binding. The residues involved in the binding were clustered in the C-terminal region, as identified by the sequence assignment. Isothermal titration calorimetry showed that the Kd of trifluoperazine-Rv1211 binding is 41 μM and that the stoichiometry is 1 : 2 (Rv1211: trifluoperazine). Our results argue against the suggestion of Rv1211 as a Ca2+-binding calmodulin-like protein, and show that Rv1211 is a natively unfolded protein that binds to trifluoperazine. In addition, our results suggest the evidence of the \"Fuzziness\" in the Rv1211-trifluoperazine interaction that differs from the conventional binding-induced folding of natively unfolded proteins.
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  • 文章类型: Journal Article
    In \'Tsuda\' turnip, the swollen root peel accumulates anthocyanin pigments in a light-dependent manner, but the mechanism is unclear. Here, mutant g120w which accumulated extremely low levels of anthocyanin after light exposure was identified. Segregation analysis showed that the anthocyanin-deficient phenotype was controlled by a single recessive gene. By using bulked-segregant analysis sequencing and CAPS marker-based genetic mapping analyses, a 21.6-kb region on chromosome A07 was mapped, in which a calcium-binding EF hand family protein named BrLETM2 was identified as the causal gene. RNA sequencing analysis showed that differentially expressed genes (DEGs) between wild type and g120w in light-exposed swollen root peels were enriched in anthocyanin biosynthetic process and reactive oxygen species (ROS) biosynthetic process GO term. Furthermore, nitroblue tetrazolium (NBT) staining showed that the ROS level decreased in g120w mutant. Anthocyanins induced by UV-A were abolished by the pre-treatment of seedlings with DPI (an inhibitor of nicotinamide adenine nucleoside phosphorylase (NADPH) oxidase) and decreased in g120w mutant. These results indicate that BrLETM2 modulates ROS signaling to promote anthocyanin accumulation in turnip under UV-A and provides new insight into the mechanism of how ROS and light regulate anthocyanin production.
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  • 文章类型: Journal Article
    钙是介导植物对非生物和生物胁迫的适应反应的重要第二信使。钙调蛋白样(CML)蛋白是一种重要的钙信号蛋白,可以感知和解码植物中的Ca2信号。紫花苜蓿是一种豆科植物模型;然而,对MtCML蛋白的研究是有限的。使用基因组分析和BLAST数据库搜索,鉴定了50种具有EF手基序的MtCML蛋白。系统发育分析表明,CML同源物之间,拟南芥和水稻有着密切的关系。基因结构分析显示,这些MtCML基因包含一到四个保守的EF手基序。所有MtCML都位于8条染色体上,并进行了基因复制。此外,MtCML基因在不同组织中差异表达。启动子区的顺式作用元件和表达分析揭示了MtCML蛋白对非生物胁迫和激素的潜在反应。该结果为进一步研究MtCML基因家族的功能奠定了基础,并促进了其在干旱条件下的遗传改良中的潜在应用。寒冷和盐胁迫环境。
    Calcium is an important second messenger in mediating adaptation responses of plants to abiotic and biotic stresses. Calmodulin-like (CML) protein is an important calcium-signaling protein that can sense and decode Ca2+ signal in plants. Medicago truncatula is a model legume plant; however, investigations of MtCML proteins are limited. Using genome analysis and BLAST database searches, fifty MtCML proteins that possess EF-hand motifs were identified. Phylogenetic analysis showed that CML homologs between M. truncatula, Arabidopsis thaliana and Oryza sativa shared close relationships. Gene structure analysis revealed that these MtCML genes contained one to four conserved EF-hand motifs. All MtCMLs are localized to eight chromosomes and underwent gene duplication. In addition, MtCML genes were differentially expressed in different tissues of M. truncatula. Cis-acting elements in promoter region and expression analysis revealed the potential response of MtCML protein to abiotic stress and hormones. The results provide a basis of further functional research on the MtCML gene family and facilitate their potential use for applications in the genetic improvement on M. truncatula in drought, cold and salt stress environments.
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  • 文章类型: Journal Article
    The marine diatom Phaeodactylum tricornutum originated from a series of secondary symbiotic events and has been used as a model organism for studying diatom biology. A novel type II homodimeric isocitrate dehydrogenase from P. tricornutum (PtIDH1) was expressed, purified, and identified in detail through enzymatic characterization. Kinetic analysis showed that PtIDH1 is NAD+-dependent and has no detectable activity with NADP+. The catalytic efficiency of PtIDH1 for NAD+ is 0.16 μM-1·s-1 and 0.09 μM-1·s-1 in the presence of Mn2+ and Mg2+, respectively. Unlike other bacterial homodimeric NAD-IDHs, PtIDH1 activity was allosterically regulated by the isocitrate. Furthermore, the dimeric structure of PtIDH1 was determined at 2.8 Å resolution, and each subunit was resolved into four domains, similar to the eukaryotic homodimeric NADP-IDH in the type II subfamily. Interestingly, a unique and novel C-terminal EF-hand domain was first defined in PtIDH1. Deletion of this domain disrupted the intact dimeric structure and activity. Mutation of the four Ca2+-binding sites in the EF-hand significantly reduced the calcium tolerance of PtIDH1. Thus, we suggest that the EF-hand domain could be involved in the dimerization and Ca2+-coordination of PtIDH1. The current report, on the first structure of type II eukaryotic NAD-IDH, provides new information for further investigation of the evolution of the IDH family.
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  • 文章类型: Journal Article
    The homologous leucine zipper/EF-hand-containing transmembranes (LETMs) are highly conserved across a broad range of eukaryotic organisms. The LETM functional characteristics involved in biological process have been identified primarily in animals, but little is known about the LETM biological function mode in plants. Based on the results of the current investigation, the GhLETM1 gene crucially affects filament elongation and anther dehiscence of the stamen in cotton. Both excessive and lower expression of the GhLETM1 gene lead to defective stamen development, resulting in shortened filaments and indehiscent anthers with pollen abortion. The results also showed that the phenotype of the shortened filaments was negatively correlated with anther defects in the seesaw model under the ectopic expression of GhLETM1. Moreover, our results notably indicated that the gene requires accurate expression and exhibits a sensitive dose effect for its proper function. This report has important fundamental and practical significance in crop science, and has crucial prospects for genetic engineering of new cytoplasmic male sterility lines and breeding of crop hybrid varieties.
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  • 文章类型: Journal Article
    Oscillations in cytosolic free calcium determine the polarity of tip-growing root hairs. The Ca2+ channel cyclic nucleotide gated channel 14 (CNGC14) contributes to the dynamic changes in Ca2+ concentration gradient at the root hair tip. However, the mechanisms that regulate CNGC14 are unknown. In this study, we detected a direct interaction between calmodulin 7 (CaM7) and CNGC14 through yeast two-hybrid and bimolecular fluorescence complementation assays. We demonstrated that the third EF-hand domain of CaM7 specifically interacts with the cytosolic C-terminal domain of CNGC14. A two-electrode voltage clamp assay showed that CaM7 completely inhibits CNGC14-mediated Ca2+ influx, suggesting that CaM7 negatively regulates CNGC14-mediated calcium signaling. Furthermore, CaM7 overexpressing lines phenocopy the short root hair phenotype of a cngc14 mutant and this phenotype is insensitive to changes in external Ca2+ concentrations. We, thus, identified CaM7-CNGC14 as a novel interacting module that regulates polar growth in root hairs by controlling the tip-focused Ca2+ signal.
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  • 文章类型: Journal Article
    Tic20是一种重要的转位蛋白,在叶绿体的蛋白质转运中起作用。Tic20的序列是在较低的褐藻中确定的。SjTic20的结构分析揭示了一种非规范结构,该结构由N端非蓝细菌起源的EF手结构域(螺旋-环-螺旋结构域)和C端蓝细菌起源的Tic20结构域组成。亚细胞定位和跨膜分析表明,SjTic20具有“M”型Nin-Cin末端取向,在微藻毛指藻的叶绿体的最内膜中具有四个跨膜结构域,EF-hand结构域完全挤出到叶绿体基质中。我们的研究提供了有关结构的信息,本地化,和SjTic20的拓扑特征,需要进一步分析SjTic20在日本血吸虫中的功能。
    Tic20 is an important translocon protein that plays a role in protein transport in the chloroplast. The sequence of Tic20 was determined in the lower brown alga Saccharina japonica. Structural analysis of SjTic20 revealed a noncanonical structure consisting of an N-terminal non-cyanobacterium-originated EF-hand domain (a helix-loop-helix structural domain) and a C-terminal cyanobacterium-originated Tic20 domain. Subcellular localization and transmembrane analysis indicated that SjTic20 featured an \"M\"-type Nin-Cin-terminal orientation, with four transmembrane domains in the innermost membrane of the chloroplast in the microalga Phaeodactylum tricornutum, and the EF-hand domain was entirely extruded into the chloroplast stroma. Our study provides information on the structure, localization, and topological features of SjTic20, and further functional analysis of SjTic20 in S. japonica is needed.
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  • 文章类型: Journal Article
    Centrin is an evolutionarily conserved EF-hand-containing protein, which is present in eukaryotic organisms as diverse as algae, yeast, and humans. Centrins are associated with the microtubule-organizing center and with centrosome-related structures, such as basal bodies in flagellar and ciliated cells, and the spindle pole body in yeast. Five centrin genes have been identified in Trypanosoma brucei (T. brucei), a protozoan parasite that causes sleeping sickness in humans and nagana in cattle in sub-Saharan Africa. In the present study, we identified that centrin5 of T. brucei (TbCentrin5) is localized throughout the cytosol and nucleus and enriched in the flagellum. We further identified that TbCentrin5 binds Ca2+ ions with a high affinity and constructed a model of TbCentrin5 bound by Ca2+ ions. Meanwhile, we observed that TbCentrin5 interacts with TbCentrin1, TbCentrin3, and TbCentrin4 and that the interactions are Ca2+ -dependent, suggesting that TbCentrin5 is able to form different complexes with other TbCentrins to participate in relevant cellular processes. Our study provides a foundation for better understanding of the biological roles of TbCentrin5.
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  • 文章类型: Journal Article
    The transcription factor IRF3 is phosphorylated in response to viral infection, and it subsequently forms a homodimer and translocates into the nucleus to induce the transcription of genes important for antiviral immunity, such as type I interferons (IFNs). This multistep process is essential for host defense against viral infection, but its regulation remains elusive. Here, we report that the EF-hand protein calmodulin-like 6 (CALML6) directly bound to the phosphorylated serine-rich (SR) region of IRF3 and impaired its dimerization and nuclear translocation. Enforced CALML6 expression suppressed viral infection-induced production of IFN-β and expression of IFN-stimulated genes (ISGs), whereas CALML6 deficiency had the opposite effect. In addition, impaired IFN-β and ISG expression in bone-marrow-derived macrophages and tissues of CALML6 transgenic mice promoted viral replication. These findings identify a phosphorylation-dependent negative feedback loop that maintains the homeostasis of antiviral innate immunity.
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