16S-rDNA

  • 文章类型: Journal Article
    绿僵菌属。已经成为化学农药的替代品,用于保护作物免受虫害。这里,我们调查了斜纹夜蛾感染黄花绿僵菌后三个不同时间点的中肠微生物群落和代谢产物。Litura的先天免疫系统被多酚氧化酶水平激活,羧酸酯酶,多功能氧化酶,谷胱甘肽S-转移酶活性显著增加。暴露于真菌病原体也改变了宿主中肠的细菌丰度和多样性,这些变化取决于曝光后经过的时间。在所有测试的时间点,与对照样品相比,我们在处理的样品中鉴定了更多的操作分类单位。总共鉴定出372种代谢物,在治疗后的3个时间点,在治疗组和对照组之间鉴定出88、149和142种差异积累的代谢物(DAMs),分别。基于不同时间点DAMs对Flavoviride感染的反应变化,并显着丰富了KEGG途径,我们推测,“酪氨酸代谢,“\”半乳糖代谢,\“\”ATP结合盒转运蛋白,神经活性配体-受体相互作用,嘌呤代谢,精氨酸和脯氨酸代谢,β-丙氨酸代谢,\"\"溶酶体,“碳代谢”和“碳代谢”可能参与代谢水平的防御反应。对16S-rDNA和代谢组学数据的综合途径水平分析说明了斜纹链球菌和中肠微生物对黄花支原体感染的代谢反应之间的联系和相互依赖性。这项工作强调了昆虫-病原体相互作用综合分析的价值,为这些相互作用的关键微生物和代谢决定因素的未来研究提供了框架,为黄维脲的可持续利用奠定了理论基础。
    Metarhizium spp. have emerged as an alternative to chemical pesticides for protecting crops from insect pest. Here, we investigated midgut microbial community and metabolites of Spodoptera litura at three different timepoints after infection with Metarhizium flavoviride. The innate immune system of S. litura was activated with levels of polyphenol oxidase, carboxylesterase, multifunctional oxidase, and glutathione S-transferase activity significantly increasing. Exposure to the fungal pathogen also altered bacterial abundance and diversity in host\'s midgut, and these changes varied depending on the time elapsed since exposure. We identified more operational taxonomic units in the treated samples as compared to the control samples at all tested time points. A total of 372 metabolites were identified, and 88, 149, and 142 differentially accumulated metabolites (DAMs) were identified between the treatment and control groups at 3 timepoints after treatment, respectively. Based on the changes of DAMs in response to M. flavoviride infection at different timepoints and significantly enriched KEGG pathways, we speculated that \"tyrosine metabolism,\" \"galactose metabolism,\" \"ATP-binding cassette transporters,\" \"neuroactive ligand-receptor interaction,\" \"purine metabolism,\" \"arginine and proline metabolism,\" \"beta-alanine metabolism,\" \"lysosome,\" and \"carbon metabolism\" may participate in the metabolic-level defense response. An integrated pathway-level analysis of the 16S-rDNA and metabolomic data illustrated the connections and interdependencies between the metabolic responses of S. litura and the midgut microorganisms to M. flavoviride infection. This work emphasizes the value of integrated analyses of insect-pathogen interactions, provides a framework for future studies of critical microorganisms and metabolic determinants of these interactions, establishes a theoretical basis for the sustainable use of M. flavoviride.
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  • 文章类型: Journal Article
    患有糖尿病前期的男性通常表现出伴随的低质量精子产生甚至不育,迫切需要改进治疗方案的问题。在这项研究中,我们建立了一个与生精缺陷相关的饮食诱导的前期糖尿病绵羊模型,并探索了可能的潜在代谢原因.
    我们比较了饲喂正常饮食的雄性绵羊与那些由丰富饮食诱发前驱糖尿病的绵羊,以及第三组由褪黑激素补充丰富饮食的绵羊。只有丰富的饮食组有糖尿病前期的症状,在这些羊身上,我们发现精子发生受损,其特征是圆形精子细胞发育受阻,睾丸凋亡细胞数量增加。比较三组的肠道微生物组和肠道消化代谢组,发现糖尿病前期绵羊的微生物群的分类组成存在显着差异,和改变的代谢组,其最重要的特征是鞘氨醇代谢改变;在血液和睾丸中也发现了鞘氨醇升高。褪黑素的给药减轻了糖尿病前期的症状,包括精子发生受损的精子发生,同时恢复更正常的微生物群和鞘氨醇的代谢水平。糖尿病前期绵羊的粪便微生物移植诱导受体小鼠鞘氨醇水平升高和精子发生受损,表明肠道微生物群在这些表型中的因果作用。
    我们的研究结果指出鞘氨醇在糖尿病前期绵羊精子发生破坏中的关键作用,并表明它可能是一个有用的疾病标志物;此外,褪黑激素是治疗前驱糖尿病引起的男性不育的潜在益生元。
    Men with prediabetes often exhibit concomitant low-quality sperm production or even infertility, problems which urgently require improved therapeutic options. In this study, we have established a sheep model of diet-induced prediabetes that is associated with spermatogenic defects and have explored the possible underlying metabolic causes.
    We compared male sheep fed a normal diet with those in which prediabetes was induced by a rich diet and with a third group in which the rich diet was supplemented by melatonin. Only the rich diet group had symptoms of prediabetes, and in these sheep, we found impaired spermatogenesis characterized by a block in the development of round spermatids and an increased quantity of testicular apoptotic cells. Comparing the gut microbiomes and intestinal digest metabolomes of the three groups revealed a distinctive difference in the taxonomic composition of the microbiota in prediabetic sheep, and an altered metabolome, whose most significant feature was altered sphingosine metabolism; elevated sphingosine was also found in blood and testes. Administration of melatonin alleviated the symptoms of prediabetes, including those of impaired spermatogenesis, while restoring a more normal microbiota and metabolic levels of sphingosine. Fecal microbiota transplantation from prediabetic sheep induced elevated sphingosine levels and impaired spermatogenesis in recipient mice, indicating a causal role of gut microbiota in these phenotypes.
    Our results point to a key role of sphingosine in the disruption of spermatogenesis in prediabetic sheep and suggest it could be a useful disease marker; furthermore, melatonin represents a potential prebiotic agent for the treatment of male infertility caused by prediabetes.
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  • 文章类型: Journal Article
    背景:尽管有很多假设,克罗恩病(CD)的发病机制至今仍不完全清楚。独家肠内营养(EEN)是治疗活动性CD的常规措施。我们旨在研究EEN对来自微生物代谢组学的活性CD患者的影响。
    方法:采用16S-rDNA测序技术和气相色谱-质谱分析研究EEN过程中肠道菌群和粪便短链脂肪酸(SCFA)的变化。
    结果:7名CD患者,谁主持了EEN,在本研究中成功随访。为期8周的EEN缓解了患有活动性CD的受试者的病情,如红细胞沉降率(ESR)显着降低(P=0.018)所示,C反应蛋白(CRP)(P=0.028),克罗恩病活动指数(CDAI)(P=0.018)。在EEN治疗8周后,受试者的营养得到改善,这与身体脏乱指数(BMI)(P=0.018)和血清白蛋白(ALB)(P=0.018)水平的增加有关。此外,我们的调查显示,Firmicutes的丰度显着增加,同时变形杆菌的水平降低。关于属,五种细菌包括Ruminococus(P=0.01),落叶松科(P=0.02),anaerotruncus(P=0.04),Flavonifractor(P=0.04),和新鞘氨醇(P=0.05)的丰度显着增加。这伴随着粪便短链脂肪酸水平的相对变化。此外,我们通过结合这5个显著不同的属,成功构建了一个稳定的模型来预测EEN对CD患者的治疗效果(AUC=0.9598).
    结论:结果表明,EEN可以通过调节肠道菌群和影响粪便短链脂肪酸的表达水平,减轻活动性CD患者的病情和营养。
    BACKGROUND: Although there are many hypotheses, the pathogenesis of Crohn\'s disease (CD) is not completely clear so far. Exclusive enteral nutrition (EEN) is a routine measure in the treatment of active CD. We aimed at investigating the impact of EEN on patients with active CD from microbial metabolomics.
    METHODS: 16S-rDNA sequencing technology and gas chromatography-mass spectrometer analysis were employed to investigate the modification of the intestinal flora and fecal short-chain fatty acid (SCFA) during the EEN.
    RESULTS: Seven patients with CD, who conducted EEN, were followed up successfully in the present study. The 8-week EEN resulted in a remission of the condition of subjects with active CD, as revealed by a significant decrease in erythrocyte sedimentation rate (ESR) (P = 0.018), C-reactive protein (CRP) (P = 0.028), and Crohn\'s disease activity index (CDAI) (P = 0.018). The nutrition of the subjects was improved after an 8-week treatment course with EEN, which was associated with an increase in body mess index (BMI) (P = 0.018) and serum albumin (ALB) (P = 0.018) levels. Furthermore, our investigations revealed a significantly increased abundance of Firmicutes paralleled by decreased levels of Proteobacteria. With respect to the genus, five species of bacteria including Ruminococcus (P = 0.01), Lachnospiraceae (P = 0.02), Anaerotruncus (P = 0.04), Flavonifractor (P = 0.04), and Novosphingobium (P = 0.05) showed significantly increased abundance. This was accompanied by relative changes in fecal short-chain fatty acids levels. Moreover, we successfully constructed a stable model by combining these five significantly different genera to predict the therapeutic effect of EEN on patients with CD (AUC = 0.9598).
    CONCLUSIONS: The findings indicated that EEN can alleviate the condition and the nutrition of patients with active CD by regulating the intestinal flora and influencing the expression level of fecal short-chain fatty acids.
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  • 文章类型: Journal Article
    OBJECTIVE: This study aimed to explore the effects of Psidium guajava L. extracts on mice diarrhea model and changes in their intestinal microflora diversity.
    METHODS: Mice diarrhea model was constructed with Folium Sennae. and The therapeutic effects of Psidium guajava L. extracts on diarrhea were evaluated by loose stools rates, diarrhea rates, diarrhea index and motor functions of intestine.
    RESULTS: Our results showed that all three kinds of extracts from Psidium guajava L. had inhibitory effects on Folium Sennae -induced diarrhea model. The proportion of Bacteroidetes is lower in Group DF (diarrhea model group) compared with Group B (blank group), while abundance of Deferribacteraceae was found in Group DF. The proportion of Deferribacteraceae lowered in Group DTF (diarrhea treatment group) treated with extracts from Psidium guajava L.
    CONCLUSIONS: However, mechanisms underlying the therapeutic effect of Psidium guajava L. and the changes in intestinal microflora still await further exploration.
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