splicing variants

拼接变体
  • 文章类型: Journal Article
    NGS方法在临床实践中的实施使研究人员能够在遗传异质性病理学的情况下有效地确定疾病的分子原因。在几种潜在致病变异的情况下,我们需要额外的分析,可以帮助选择一个适当的致病变量。在目前的研究中,我们描述了一个遗传性运动和感觉神经病(HMSN)1型(Charcot-Marie-Tooth病)的家庭病例。DNA分析显示SH3TC2基因有两个变异(c.279G>A和c.1177+5G>A),以及先前描述的MPZ基因中的变异c.449-9C>T,处于杂合状态。由于先证者的父亲无法使用,因此这项家庭隔离研究不完整。为了评估变种的致病性,进行小基因剪接分析。这项研究表明MPZ变体对剪接没有影响,但是SH3TC2基因中的c.1177+5G>A变体导致RNA序列中内含子10的122个核苷酸的保留,导致移码和过早终止密码子的发生(NP_078853.2:p。Ala393GlyfsTer2)。
    The implementation of NGS methods into clinical practice allowed researchers effectively to establish the molecular cause of a disorder in cases of a genetically heterogeneous pathology. In cases of several potentially causative variants, we need additional analysis that can help in choosing a proper causative variant. In the current study, we described a family case of hereditary motor and sensory neuropathy (HMSN) type 1 (Charcot-Marie-Tooth disease). DNA analysis revealed two variants in the SH3TC2 gene (c.279G>A and c.1177+5G>A), as well as a previously described variant c.449-9C>T in the MPZ gene, in a heterozygous state. This family segregation study was incomplete because of the proband\'s father\'s unavailability. To evaluate the variants\' pathogenicity, minigene splicing assay was carried out. This study showed no effect of the MPZ variant on splicing, but the c.1177+5G>A variant in the SH3TC2 gene leads to the retention of 122 nucleotides from intron 10 in the RNA sequence, causing a frameshift and an occurrence of a premature stop codon (NP_078853.2:p.Ala393GlyfsTer2).
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  • 文章类型: Case Reports
    Barth综合征(BTHS)是一种以心肌病为特征的X连锁疾病,骨骼肌病,和3-甲基谷氨酸尿症。BTHS的致病变异在TAZ,它编码一种名为tafazzin的推定酰基转移酶,并参与线粒体内膜心磷脂的重塑。TAZ中的致病变体导致线粒体结构和功能异常。我们报告一例婴儿BTHS伴严重心力衰竭,左心室不紧密,和乳酸性酸中毒,有一个误解c.640C>T(p.His214Tyr)在TAZ中的变体,这被认为是基于先前报道的在相同位点的氨基酸取代的致病变体(c.641A>G,p.His214Arg)。然而,在以前报道的这个案例中,心功能得到补偿,与本案并不完全相似。Silico预测分析表明c.640C>T可以改变TAZ信使RNA(mRNA)的剪接过程。来自患者的分离的外周单核细胞中的TAZmRNA和使用TAZ的小基因进行的体外剪接分析发现在外显子8的3'末端有8bp的缺失,这导致在外显子9的编码区形成终止密码子(H214Nfs*3)。这些发现表明,在BTHS中应始终考虑剪接异常。
    Barth syndrome (BTHS) is an X-linked disorder characterized by cardiomyopathy, skeletal myopathy, and 3-methylglutaconic aciduria. The causative pathogenic variants for BTHS are in TAZ, which encodes a putative acyltransferase named tafazzin and is involved in the remodeling of cardiolipin in the inner mitochondrial membranes. Pathogenic variants in TAZ result in mitochondrial structural and functional abnormalities. We report a case of infantile BTHS with severe heart failure, left ventricular noncompaction, and lactic acidosis, having a missense c.640C>T (p.His214Tyr) variant in TAZ, which is considered a pathogenic variant based on the previously reported amino acid substitution at the same site (c.641A>G, p.His214Arg). However, in this previously reported case, heart function was compensated and not entirely similar to the present case. Silico prediction analysis suggested that c.640C>T could alter the TAZ messenger RNA (mRNA) splicing process. TAZ mRNAs in isolated peripheral mononuclear cells from the patient and in vitro splicing analysis using minigenes of TAZ found an 8 bp deletion at the 3\' end of exon 8, which resulted in the formation of a termination codon in the coding region of exon 9 (H214Nfs*3). These findings suggest that splicing abnormalities should always be considered in BTHS.
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