A direct, positive correlation between biodiversity and the traditional agricultural landscape is evident on the national or regional scale. It is mostly conditioned by higher landscape diversity and less intensive farming. We have carried out research on a detailed scale at plot level (productive plots of arable lands, grasslands, vineyards, orchards, and unproductive agrarian landforms (mostly field margins) such as terraced slopes, terraced steps, heaps, mounds, and unconsolidated walls) in three traditional agricultural landscapes: the mountain village Liptovská Teplička, the vineyard landscape in Svätý Jur, and dispersed settlements in a submontane area in Hriňová. We determined the statistical significance of the impact of the selected landscape ecological factors (a set of factors concerning land use and management, agrarian landforms and relief properties) on the distribution of vegetation and selected invertebrate groups (spiders, millipedes, grasshoppers, and crickets). We also explored whether maintaining traditional land use and traditional management helped to enhance the biodiversity. We found that the management regime is the most important factor determining the species composition of vascular plants and all studied animal groups. Also, present land use and agrarian landforms character (type, skeleton content, continuity) are significant factors. Our expectation of a positive relationship between biodiversity and the maintaining traditional land use and traditional management was, in general, not confirmed: such a relation was only found in Svätý Jur for biodiversity of spiders.

Measuring species richness at varying spatial extents can be challenging, especially at large extents where exhaustive species surveys are difficult or impossible. Our work aimed at determining the reliability of species richness estimates from stacked ecological niche models at different spatial extents for taxonomic groups with vastly different environmental dependencies and interactions. To accomplish this, we generated ecological niche models for the species of Cactaceae and Pinaceae that occur within 180 published floras from North America north of Mexico. We overlaid or stacked the resulting species\' potential distribution estimates over the bounding boxes representing each of the 180 floras to generate predictions of species richness. In general, our stacked models of Cactaceae and Pinaceae were poor predictors of species richness. The relationships between observed and predicted values improved noticeably with the size of spatial extents. However, the stacked models tended to overpredict the richness of Cactaceae and over- and underpredict the richness of Pinaceae. Cactaceae stacked models showed higher sensitivity and lower specificity than those for Pinaceae. We conclude that stacked ecological niche models may be somewhat poor predictors of species richness at smaller spatial extents and should be used with caution for this purpose. Perhaps more importantly, abilities to compensate for their limitations or apply corrections to their reliability may vary with taxonomic groups.

The fragmentation of the natural habitat is a process that is exponentially increasing worldwide and represents one of the biggest threats to biological diversity. Habitat destruction and fragmentation have a major impact on landscapes and may also affect ecosystems, populations, and species. The ongoing anthropogenic process can result in habitat loss for some species, habitat creation for others, reduced patch size, and increased distance between patches, which may lead to local extinction. We analyzed the effects of patch size and isolation on lichens in Quercus pubescens woods surrounding the city of Potenza (south Italy). We randomly sampled 11 forest patches with homogeneous environmental variables using circular plots with a 10 m radius; the patches ranged from 0.3 to 30 ha. For each plot, we collected data about presence and abundance of epiphytic lichens. We performed the analyses at the patch level using linear regression and multivariate analysis, searching for effects on species richness, life forms, and community compositions. Multivariate analyses were used to study the effect of fragmentation on the structure of lichen vegetation. We investigated the main predictor of lichen species richness in habitat fragmentations and concluded that patch area per se is an important (positive) driver of lichen species richness in Mediterranean peri-urban forests.

We introduce a new method of estimating accepted species diversity by adapting mark-recapture methods to comparisons of taxonomic databases. A taxonomic database should become more complete over time, so the error bar on an estimate of its completeness and the known diversity of the taxon it treats will decrease. Independent databases can be correlated, so we use the time course of estimates comparing them to understand the effect of correlation. If a later estimate is significantly larger than an earlier one, the databases are positively correlated, if it is significantly smaller, they are negatively correlated, and if the estimate remains roughly constant, then the correlations have averaged out. We tested this method by estimating how complete MolluscaBase is for accepted names of terrestrial gastropods. Using random samples of names from an independent database, we determined whether each name led to a name accepted in MolluscaBase. A sample tested in August 2020 found that 16.7% of tested names were missing; one in July 2021 found 5.3% missing. MolluscaBase grew by almost 3,000 accepted species during this period, reaching 27,050 species. The estimates ranged from 28,409 ± 365 in 2021 to 29,063 ± 771 in 2020. All estimates had overlapping 95% confidence intervals, indicating that correlations between the databases did not cause significant problems. Uncertainty beyond sampling error added 475 ± 430 species, so our estimate for accepted terrestrial gastropods species at the end of 2021 is 28,895 ± 630 species. This estimate is more than 4,000 species higher than previous ones. The estimate does not account for ongoing flux of species into and out of synonymy, new discoveries, or changing taxonomic methods and concepts. The species naming curve for terrestrial gastropods is still far from reaching an asymptote, and combined with the additional uncertainties, this means that predicting how many more species might ultimately be recognized is presently not feasible. Our methods can be applied to estimate the total number of names of Recent mollusks (as opposed to names currently accepted), the known diversity of fossil mollusks, and known diversity in other phyla.

In rapidly urbanized regions, the development of sustainable and resilient urban agriculture is essential to reduce environmental pollution and ensure reusable resources. The purpose of this study was to design, implement, and analyze the effects of reclaimed water reuse systems on crop growth, water purification, and ecology. A simulated experimental field near the side of Li Tse Lake at MingDao University in Changhua County, Taiwan, was chosen as the research field. A reclaimed water reuse system was established to collect domestic sewage discharged from the student dormitory, and a soil filter bed and plants in the system were used to purify the sewage, so as to detect its effects on water quality, soil, plant growth, and ecology throughout the year. According to the results, the water purified by the reclaimed water reuse system met the agricultural irrigation water quality criteria. While the soil filter bed showed that the purified water was alkaline and had low electrical conductivity, this did not affect plant growth. In the reclaimed water reuse system, the cultivation of fruiting and leafy vegetables increased the habitats of a number of organisms, and a total of 49 families of arthropods in 13 orders were found. This study showed that the reclaimed water reuse system could not only purify water and promote water reuse but also improve the ecology and develop the potential for food production.

Nitrogen (N) deposition has been increasing for decades and has profoundly influenced the structure and function of grassland ecosystems in many regions of the world. However, the impact of N deposition on alpine grasslands is less well documented. We conducted a 3-year field experiment to determine the effects of N deposition on plant species richness, composition, and community productivity in an alpine meadow of the Qinghai-Tibetan Plateau of China. We found that 3 years of N deposition had a profound effect on these plant community parameters. Increasing N rates increased the dominance of graminoids and reduced the presence of non-graminoids. Species richness was inversely associated with aboveground biomass. The shift in plant species and functional group composition was largely responsible for the increase in productivity associated with N deposition. Climatic factors also interacted with N addition to influence productivity. Our findings suggest that short-term N deposition could increase the productivity of alpine meadows through shifts in composition toward a graminoid-dominated community. Longer-term studies are needed to determine if shifts in composition and increased productivity will be maintained. Future work must also evaluate whether decreasing plant diversity will impair the long-term stability and function of sensitive alpine grasslands.

The Western Ghats (WG) mountain chain in peninsular India is a global biodiversity hotspot, one in which patterns of phylogenetic diversity and endemism remain to be documented across taxa. We used a well-characterized community of ancient soil predatory arthropods from the WG to understand diversity gradients, identify hotspots of endemism and conservation importance, and highlight poorly studied areas with unique biodiversity. We compiled an occurrence dataset for 19 species of scolopendrid centipedes, which was used to predict areas of habitat suitability using bioclimatic and geomorphological variables in Maxent. We used predicted distributions and a time-calibrated species phylogeny to calculate taxonomic and phylogenetic indices of diversity, endemism, and turnover. We observed a decreasing latitudinal gradient in taxonomic and phylogenetic diversity in the WG, which supports expectations from the latitudinal diversity gradient. The southern WG had the highest phylogenetic diversity and endemism, and was represented by lineages with long branch lengths as observed from relative phylogenetic diversity/endemism. These results indicate the persistence of lineages over evolutionary time in the southern WG and are consistent with predictions from the southern WG refuge hypothesis. The northern WG, despite having low phylogenetic diversity, had high values of phylogenetic endemism represented by distinct lineages as inferred from relative phylogenetic endemism. The distinct endemic lineages in this subregion might be adapted to life in lateritic plateaus characterized by poor soil conditions and high seasonality. Sites across an important biogeographic break, the Palghat Gap, broadly grouped separately in comparisons of species turnover along the WG. The southern WG and Nilgiris, adjoining the Palghat Gap, harbor unique centipede communities, where the causal role of climate or dispersal barriers in shaping diversity remains to be investigated. Our results highlight the need to use phylogeny and distribution data while assessing diversity and endemism patterns in the WG.

The association between intestinal flora and ulcerative colitis (UC) was studied in order to provide a basis and method for clinical treatment. Fresh fecal samples were collected from 30 active UC patients and 10 healthy controls. The intestinal flora DNA from each sample was extracted and 16S rRNA gene sequencing was carried out using HiSeq platform to identify the intestinal flora in fecal samples. The richness and diversity of intestinal flora in UC patients were significantly lower than those in healthy control group (P < 0.05). Significant differences were observed between the intestinal flora-species of UC patients and healthy controls. Synergistetes (P < 0.01) and Firmicutes (P < 0.05), along with probiotics Veillonella (P < 0.01), Ruminococcus and Coprococcus (P < 0.05) in the UC patients were lower than that in the healthy controls significantly. Furthermore, compared with the control group, Tenericutes (P < 0.01) and intestinal pathogenic bacteria, including Bacteroides (P < 0.01), Escherichia and Sutterella (P < 0.05) were significantly increased. The incidence of UC is significantly associated with the changes in intestinal flora. Changes in intestinal flora may lead to a decrease in the diversity of intestinal flora or to the enrichment of a particular intestinal flora.

Kwan et al. (2017) published an informative study comparing results obtained by next-generation sequencing (NGS) of mean bacterial genera richness among different life stages, male and female adults, and rearing conditions (field vs. laboratory) for Ixodes pacificus. The current paper examines Kwan et al. (2017) as a case study to provide guidance on statistical design and analysis for estimation of richness, derived from next generation sequencing technology, of the bacterial microbiome in field-collected I. pacificus. Suggestions are provided to further strengthen quantification of microbiome richness in studies in ticks, with focus on sampling design. In-depth treatment is provided of the relative merits of estimating mean richness versus median richness. Research on microbiome diversity in ticks can be made quantitatively rigorous; although, more research on methods is needed.

Water mites of the genus Unionicola are common parasites of freshwater mussels, living on the gills or mantle of their hosts and using these tissues as sites of oviposition. Although surveys of this mite fauna among North American unionid mussels indicate that these mites represent highly diverse assemblages, we know very little regarding the determinants of Unionicola species diversity among their molluscan hosts. The present study addresses the relationship between host diversity and mite diversity for Unionicola assemblages associated with unionid mussels of North America. The results of this study found a significantly positive relationship between host species richness and mite species richness, adding to a growing body of evidence that host diversity is an important determinant of parasite diversity. In recent years, molecular sequence data have discovered cryptic biodiversity among unionid mussels, yielding revisions in the nomenclature and systematic taxonomy of the group. DNA sequence variation has also revealed cryptic species complexes among Unionicola mites. Collectively, these findings suggest that the results of the present study may be underestimating species richness among mites and their host mussels. Unfortunately, human perturbations are known to have caused high recent rates of extinction in the mussel and mite faunas of North America and could play a major role in influencing patterns of species richness for this host-parasite system moving forward.