rare variant

稀有变体
  • 文章类型: Case Reports
    格林-巴利综合征(GBS)是一种累及周围神经系统的急性炎性多发性神经根神经病。自主神经功能障碍是众所周知的GBS并发症,是死亡的主要原因。在疾病的急性期,传统上描述了自主神经功能障碍。在文学中,作为GBS表现的Horner综合征在极少数病例中已被报道。这里,我们描述了一例GBS急性表现为与单侧Horner综合征相关的弛缓性轻瘫的病例.检测单侧霍纳综合征的急性弛缓性轻瘫的病因提出了诊断挑战,这使得临床医生保持高度的区分GBS及其变体的意识至关重要,以及其他潜在的模仿。
    Guillain-Barré syndrome (GBS) is an acute inflammatory polyradiculoneuropathy involving the peripheral nervous system. Autonomic dysfunctions are well-known complications of GBS and are major contributors to mortality. Autonomic dysfunctions are classically described during the acute phase of illness. In the literature, Horner syndrome as a manifestation of GBS has been reported in very few cases. Here, we describe a case of GBS with an acute presentation of flaccid paraparesis associated with unilateral Horner syndrome. Detecting the cause of acute flaccid paraparesis with unilateral Horner syndrome poses a diagnostic challenge, making it crucial for clinicians to maintain a heightened awareness for distinguishing between GBS and its variants, as well as other potential mimics.
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  • 文章类型: Journal Article
    范可尼贫血(FA)是一种异质性遗传性疾病,其特征是进行性骨髓衰竭,先天性畸形,易患恶性肿瘤,身材矮小。RFWD3基因最近与FA互补组W、到目前为止,文献中仅报道了1例患者。
    这里,我们报告第二个病人,一个10岁的男性,谁不能茁壮成长,中枢神经系统异常,双侧射线缺陷,泌尿生殖系统异常,面部畸形,和血小板减少症.根据上述发现,该患者被怀疑患有FA,通过全外显子组测序检测到RFWD3基因中的纯合c.1501C>T变异。二环氧丁烷试验和丝裂霉素C诱导的外周血培养显示0.46和0.90染色体断裂,分别。
    在本文中,详细讨论了第二例FA补充组W患者的临床发现,旨在扩大该疾病的临床和分子生物学范围。
    UNASSIGNED: Fanconi anemia (FA) is a heterogeneous genetic disorder that is characterized by progressive bone marrow failure, congenital malformations, predisposition to malignancy, and short stature. The RFWD3 gene was recently associated with FA complementation group W, and only 1 patient is reported in the literature so far.
    UNASSIGNED: Here, we report the second patient, a 10-year-old male, who has failure to thrive, central nervous system abnormalities, bilateral radial ray defects, urogenital anomalies, facial dysmorphism, and thrombocytopenia. The patient was suspected to have FA according to the aforementioned findings, and the homozygous c.1501C>T variant in the RFWD3 gene was detected by whole-exome sequencing. The diepoxybutane test and mitomycin C-induced peripheral blood cultures revealed 0.46 and 0.90 chromosomal breaks, respectively.
    UNASSIGNED: In this article, clinical findings of the second patient with FA complementation group W are discussed in detail, aiming to expand the clinical and molecular spectrums of the disease.
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  • 文章类型: Case Reports
    提出术语“delta指骨”是为了表征一种罕见的畸形,通常会影响手指的中指骨。它有希腊大写字母delta的外观,意味着它的形状像一个三角形。因为错误的骨phy发生在近端到远端,而不是沿着其通常的水平方向,骨头呈半月状。功能障碍或手指明显缩短是手术的适应症。各种先天性手部异常与三角指骨有关。很少有尺骨多指中三角指骨的病例。此案例研究调查了尺骨多指中掌骨三角指骨的极为罕见的发生。
    The term \"delta phalanx\" is proposed to characterize an uncommon deformity that typically affects the middle phalanx of a finger. It has the appearance of the Greek capital letter delta, meaning it is shaped like a triangle. Because the faulty epiphysis occurs proximally to distally instead of along its usual horizontal course, the bone has a semilunar shape. Functional impairment or significant finger shortening are indications for surgery. A variety of congenital hand anomalies are linked to the delta phalanx. Few cases of middle delta phalanx in the ulnar polydactyly finger have been documented. This case study investigates an extremely uncommon occurrence of metacarpal delta phalanx in an ulnar polydactyly finger.
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  • 文章类型: Case Reports
    The sensory ataxic variant of Guillain-Barre syndrome (GBS) is a rare subtype, with limited case reports available. We present the case of a previously healthy 26-year-old female university student who presented with bilateral foot numbness and unsteady gait for five days, without limb weakness. There were no signs of infection or recent history suggestive of infection. Examination revealed reduced pain and light touch sensation, as well as proprioception impairment in the bilateral distal lower limb, accompanied by an ataxic gait. Bilateral upper and lower limb power was normal. Cerebrospinal fluid (CSF) studies showed albuminocytological dissociation, while nerve conduction studies indicated unrecordable sensory responses with normal motor responses. Through a comprehensive evaluation of history, examination, and investigations, other potential differential diagnoses were excluded. Then the patient was diagnosed with a sensory ataxic variant of Guillain-Barre syndrome and treated with intravenous immunoglobulin (IVIG). Over time, the patient demonstrated gradual improvement and was able to resume her university studies four months after discharge.
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  • 文章类型: Case Reports
    软骨发育不全是由FGFR3基因错义变异引起的先天性骨骼系统畸形,发生率为每20,000-30,000新生儿中1例,这是一种常染色体显性遗传疾病。尽管成像特征相似,纯合子软骨发育不全是绝对致命的,而杂合子软骨发育不全不会导致胎儿死亡。
    在妊娠中期,通过产前超声检查发现胎儿具有进行性根茎性短肢和明显狭窄的胸部。羊水样本的基因测序结果表明罕见的错义变异NM_000142.4:c.1123G>T(p。Gly375Cys),导致甘氨酸被半胱氨酸取代。重新测序证实它是一个杂合变体,然后通过放射学检查在尸体中确认胸廓狭窄。
    我们确定了FGFR3基因的杂合变体是胎儿严重软骨发育不全的罕见致病变体。p.Gly375Cys的杂合变体可具有类似于纯合子的严重表型。产前超声检查与基因检查相结合对鉴别杂合性软骨发育不全和纯合性软骨发育不全至关重要。FGFR3基因的p.Gly375Cys变体可能是诊断严重软骨发育不全的重要靶标。
    Achondroplasia is a congenital skeletal system malformation caused by missense variant of FGFR3 gene with an incidence of 1 per 20,000-30,000 newborns, which is an autosomal dominant inheritance disease. Despite similar imaging features, the homozygous achondroplasia is absolutely lethal due to thoracic stenosis, whereas heterozygous achondroplasia does not lead to fetal death.
    A fetus with progressive rhizomelic short limbs and overt narrow chest was detected by prenatal ultrasound in the second trimester. Gene sequencing results of amniotic fluid sample indicated a rare missense variant NM_000142.4: c.1123G > T(p.Gly375Cys), leading to a glycine to cysteine substitution. Re-sequencing confirmed that it was a heterozygous variant, and thoracic stenosis was then confirmed in the corpse by radiological examination.
    We identified a heterozygous variant of the FGFR3 gene as the rare pathogenic variant of severe achondroplasia in a fetus. Heterozygous variants of p.Gly375Cys may have a severe phenotype similar to homozygote. It\'s crucial to combine prenatal ultrasound with genetic examination to differentiate heterozygous from homozygous achondroplasia. The p.Gly375Cys variant of FGFR3 gene may serve as a vital target for the diagnosis of severe achondroplasia.
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  • 文章类型: Case Reports
    背景:地中海贫血是一种遗传性血液疾病,由于α-和/或β-珠蛋白基因变异导致珠蛋白链合成受损。α-地中海贫血的特征是HBA基因位点的非缺失和缺失变异,其中罕见的缺失变体难以通过常规的基于聚合酶链反应(PCR)的方法检测。病例报告:我们报告了一个一个月大的男孩的病例,他和他母亲的血液学参数异常,而他父亲的血液学正常.对所有家族成员进行常规PCR-反向斑点印迹(RDB)分析中国最常见的23种地中海贫血变异,但未发现任何病理变异。然后进行单分子实时(SMRT)长读测序(LRS)技术,并鉴定出α-珠蛋白基因座的未报告的14.9kb大缺失(hg38chr16:168,803-183,737),破坏了先证者和他母亲的HBA1和HBA2基因。通过gap-PCR和Sanger测序确认缺失的确切断点。结论:我们在中国发现了一个新的α-珠蛋白基因位点的大缺失,这不仅丰富了地中海贫血的变异谱,但也证明了LRS在检测罕见和新颖缺失方面的准确性和效率。
    Background: Thalassemia is a hereditary blood disease resulting from globin chain synthesis impairment because of α- and/or β-globin gene variants. α-thalassemia is characterized by non-deletional and deletional variants in the HBA gene locus, of which rare deletional variants are difficult to detect by conventional polymerase chain reaction (PCR)-based methods. Case report: We report the case of a one-month-old boy, who and his mother had abnormal hematological parameters, while his father had normal hematology. Conventional PCR-reverse dot blot (RDB) was performed for all family members to analyze the 23 most common thalassemia variants in China, but did not identify any pathologic variants. Single-molecule real-time (SMRT) long-read sequencing (LRS) technology was then performed and identified an unreported 14.9-kb large deletion (hg38 chr16:168,803-183,737) of the α-globin gene locus, which disrupted both HBA1 and HBA2 genes in the proband and his mother. The exact breakpoints of the deletion were confirmed by gap-PCR and Sanger sequencing. Conclusion: We have detected a novel large deletion in α-globin gene locus in China, which not only enriches the variant spectrum of thalassemia, but also demonstrates the accuracy and efficiency of LRS in detecting rare and novel deletions.
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  • 文章类型: Case Reports
    Mucinous tubular and spindle cell carcinoma (MTSCC) of kidney is a rare variant of renal cell carcinoma which was first described in the 2004 World Health Organization classification of tumours of the kidney. Morphologically, MTSCC is composed of tubules merging with bland-appearing spindle cells in a myxoid/mucinous stroma. Diverse morphological patterns have been reported in MTSCC; however, a spindle cell predominant morphology mimicking a mesenchymal tumour is rare and only two cases have been reported so far. We report a case of MTSCC with spindle cell predominance in kidney which was a diagnostic challenge. Though MTSCC usually shows an indolent course, there have been cases showing aggressive behaviour even with bland morphology. Hence, a thorough histopathological evaluation with ancillary studies are required to differentiate spindle cell predominant MTSCC from its mimics. Our case was a 40-year-old female who was incidentally found to have a well-defined hypodense lesion measuring around 2 cm in the upper pole of the right kidney. Right partial nephrectomy was performed which showed a 2.7 × 2.5 × 2 cm well-defined grey tan tumour without necrosis or haemorrhage, limited to kidney. Histopathological examination showed sheets of bland-appearing spindle cells mimicking a mesenchymal tumour. The tumour was extensively sampled, revealing small foci of tubule formation and mucinous stroma. Tumour cells were positive for CK7, AMACR, and PAX8. A final diagnosis of MTSCC was made. Hereby, we discuss ways of differentiating MTSCC from other spindle cell tumours of the kidney.
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  • 文章类型: Journal Article
    BACKGROUND: Bromodomain-containing protein 7 (BRD7), a member of the bromodomain-containing protein family, plays important roles in chromatin modification and transcriptional regulation. A recent model of Brd7-knockout mice presented azoospermia and male infertility, implying the potential role of BRD7 in spermatogenic failure in humans. This case-control study aimed to explore the association of the BRD7 gene with spermatogenic efficiency and the risk of spermatogenic defects in humans.
    RESULTS: A total of six heterozygous variants were detected in the coding and splicing regions of the BRD7 gene in patients with azoospermia. For each of four rare variants predicted to potentially damage BRD7 function, we further identified these four variants in oligozoospermia and normozoospermia as well. However, no difference in the allele and genotype frequencies of rare variants were observed between cases with spermatogenic failure and controls with normozoospermia; the sperm products of variant carriers were similar to those of noncarriers. Moreover, similar distribution of the alleles, genotypes and haplotypes of seven tag single nucleotide polymorphisms (tagSNPs) was observed between the cases with azoospermia and oligozoospermia and controls with normozoospermia; associations of tagSNP-distinguished BRD7 alleles with sperm products were not identified.
    CONCLUSIONS: The lack of an association of BRD7-linked rare and common variants with spermatogenic failure implied a limited contribution of the BRD7 gene to spermatogenic efficiency and susceptibility to male infertility in humans.
    RéSUMé: CONTEXTE: Le bromodomaine contenant la protéine 7 (BRD7), un membre de la famille du bromodomaine contenant des protéines, joue des rôles importants dans la modification de la chromatine et la régulation transcriptionnelle. Un modèle récent de souris Brd7-knockout présentait une azoospermie et une infertilité mâle, ce qui implique un rôle potentiel de BRD7 dans l’altération de la spermatogenèse chez l’homme. Cette étude cas-témoins visait à explorer l’association du gène BRD7 avec l’efficacité de la spermatogenèse et le risque d’altérations spermatogéniques chez l’homme. RéSULTATS: Un total de six variants hétérozygotes ont été détectés dans les régions de codage et d’épissage du gène BRD7 chez les patients présentant une azoospermie. Pour chacun des quatre variants rares prédits pour potentiellement endommager la fonction BRD7, nous avons en outre identifié ces quatre variants dans l’oligozoospermie et la normozoospermie. Cependant, nous n’avons observé aucune différence dans les fréquences d’allèle et de génotype des variants rares entre les cas avec altérations de la spermatogenèse et les témoins avec normozoospermie ; les produits du sperme des porteurs de variants étaient semblables à ceux des non-porteurs. Par ailleurs, on a observé une distribution semblable des allèles, des génotypes et des haplotypes de sept polymorphismes simples de nucléotide de balise (tagSNPs) entre les cas avec azoospermie ou oligozoospermie et les témoins normozoospermiques; aucune association n’a pas été identifiée entre les allèles BRD7 tagSNP-distingués et des produits du sperme. CONCLUSION: L’absence d’association des variants rares liés à BRD7 et des variants communs liés à BRD7 avec les altérations de la spermatogenèse implique une contribution limitée du gène BRD7 à l’efficacité spermatogénique et à la susceptibilité à l’infertilité masculine chez l’homme.
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  • 文章类型: Journal Article
    罕见变异的病例对照关联研究的标准方法通常将疾病结局视为二分表型。然而,理论和实验研究都表明,相对于没有疾病家族史的受试者,有疾病家族史的受试者可以丰富风险变化。假设有家族史信息,这一观察结果激发了用区分对照的信息更丰富的序数结果变量代替病例对照研究中使用的标准二分结果变量的想法(0),散发病例(1),和有家族史的病例(2),期望随着序数变量类别的增加,我们应该观察到风险变量的数量也在增加。为了利用这种期望,我们提出了一种新颖的稀有变异关联检验,该检验基于我们以前的多变量表型稀有变异关联检验框架,纳入家族史信息.我们用模拟数据表明,当家族史信息可用时,我们的新方法优于标准的稀有变量关联方法,比如负担和SKAT测试,忽视家族史。我们进一步说明我们的方法使用罕见的变异研究唇腭裂。
    Standard methods for case-control association studies of rare variation often treat disease outcome as a dichotomous phenotype. However, both theoretical and experimental studies have demonstrated that subjects with a family history of disease can be enriched for risk variation relative to subjects without such history. Assuming family history information is available, this observation motivates the idea of replacing the standard dichotomous outcome variable used in case-control studies with a more informative ordinal outcome variable that distinguishes controls (0), sporadic cases (1), and cases with a family history (2), with the expectation that we should observe increasing number of risk variants with increasing category of the ordinal variable. To leverage this expectation, we propose a novel rare-variant association test that incorporates family history information based on our previous GAMuT framework for rare-variant association testing of multivariate phenotypes. We use simulated data to show that, when family history information is available, our new method outperforms standard rare-variant association methods, like burden and SKAT tests, that ignore family history. We further illustrate our method using a rare-variant study of cleft lip and palate.
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  • 文章类型: Case Reports
    背景:上皮样神经鞘瘤作为一种罕见的变异体对所有病理学家构成了挑战,因为这种不常见的实体由于其独特的组织病理学特征,仅通过对切除的样品进行形态学分析很难最终诊断。然而,很少有论文描述了上皮样神经鞘瘤的详细临床病理特征。
    方法:一名65岁的女性,有一个平坦的、略微隆起的坚硬和棕褐色的斑块,并伴有偶尔的压痛。测量10×8毫米,切除前1年在她手的右关节。对局部切除的标本进行粗略检查,发现包裹的结节性病变,黄色-白色,部分充满了血。显微镜检查显示,肿瘤主要由上皮样细胞的实体增殖组成,这些细胞具有轻度扩大的圆形至部分纺锤状的核和大量的空泡状或透明的细胞质,几乎没有有丝分裂图和适度的核大小变化。与局灶性透明相关,囊性和出血性变性。这个界限分明的肿瘤被致密的包围着,透明和层状纤维胶原基质。免疫组织化学,这些肿瘤细胞对S-100蛋白呈弥漫性阳性,MIB-1标记指数非常低,IV型胶原蛋白与它们的重复基底膜强烈反应。我们最终诊断为皮肤上皮样神经鞘瘤。
    结论:我们应该意识到,因为病理学家可能会将上皮样神经鞘瘤误解为其他软组织肿瘤,包括它的恶性对应物,一组广泛的免疫组织化学抗体可以成为鉴定非常罕见的常规神经鞘瘤实体的强大补充工具。
    BACKGROUND: Epithelioid schwannoma as a rare variant poses a challenge to all pathologists, as this uncommon entity is extremely difficult to conclusively diagnose by morphological analyses on a resected sample alone owing to its unique histopathological features. However, few papers have described the detailed clinicopathological characteristics of epithelioid schwannoma.
    METHODS: A 65-year-old female presented with a history of a flat and slightly elevated firm and tan plaque accompanied by occasional tenderness, measuring 10 × 8 mm, in the right joint of her hand 1 year before resection. A gross examination of a locally resected specimen revealed an encapsulated nodular lesion, yellow-whitish in color, partly filled with blood. A microscopic examination showed that the tumor predominantly consisted of a solid proliferation of epithelioid cells having mildly enlarged and round to partially spindled nuclei and abundant vacuolated or clear cytoplasm with very few mitotic figures and modest nuclear size variation, associated with focal hyalinized, cystic and hemorrhagic degeneration. This well-demarcated tumor was surrounded by dense, hyalinized and layered fibrocollagenous stroma. Immunohistochemically, these tumor cells were diffusely positive for S-100 protein and had a very low MIB-1 labeling index, and type IV collagen was strongly reactive with reduplicated basal lamina of them. We ultimately made a diagnosis of cutaneous epithelioid schwannoma.
    CONCLUSIONS: We should be aware that, since pathologists might misinterpret epithelioid schwannoma as other soft tissue tumors, including its malignant counterpart, a wide panel of immunohistochemical antibodies can be powerful supplementary tools for identifying a very rare entity of conventional schwannoma.
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