rapeseed

油菜籽
  • 文章类型: Journal Article
    这项调查的目的是评估残留物水平,在两年的时间内,从中国主要产区收集的油菜样品中38种最常用农药的分布和暴露风险。采样区覆盖12个省,包括贵州,陕西,云南,湖南,江西,四川,重庆,安徽,河南,湖北,浙江,和江苏省。使用QuEChERS(QuickEasyCheapEffectiveRuggedandSafe)方法结合气相色谱-串联质谱法和液相色谱-串联质谱法测定农药残留。8.4%的油菜籽样品含有农药,残留水平为0.001至0.634mg/kg。检测的分析物是吡虫啉,quizalofop-P-乙基,噻虫嗪,多效唑,丙草胺,戊唑醇,苯醚甲环唑,s-异丙甲草胺,克百威,还有多菌灵.四种分析物的浓度,包括噻虫嗪,苯醚甲环唑,多菌灵和丙氯胺,超过了中国政府为油菜籽设定的最高残留水平,超标率为0.1%,0.1%,0.1%,1.1%,分别。根据残留物质量指数(IqR)值,总油菜籽样品的91.6%具有优异的IqR类别(IqR=0)。只有1.5%的测试样品质量不足。此外,慢性和急性暴露的评估,以及与油菜籽中农药残留相关的健康风险,是针对中国人口中的不同年龄段进行的,包括成年人(6-14岁),儿童(15-49岁)和老年人(50-74岁)。评估结果表明,中国种植的油菜籽中的农药残留预计不会对中国客户造成短期或长期风险。
    The aim of this survey was to evaluate the residue levels, distribution and exposure risk of the 38 most commonly used pesticides in rapeseed samples collected from the main production areas in China over a two-year period. The sampling area covered 12 provinces, including Guizhou, Shaanxi, Yunnan, Hunan, Jiangxi, Sichuan, Chongqing, Anhui, Henan, Hubei, Zhejiang, and Jiangsu provinces. The pesticide residues were determined using a QuEChERS (Quick Easy Cheap Effective Rugged and Safe) method coupled with gas chromatography-tandem mass spectrometry and liquid chromatography-tandem mass spectrometry. 8.4% of the rapeseed samples contained pesticides with a residue level ranging from 0.001 to 0.634 mg/kg. The detected analytes were imidacloprid, quizalofop-P-ethyl, thiamethoxam, paclobutrazol, prochloraz, tebuconazole, difenoconazole, s-metolachlor, carbofuran, and carbendazim. The concentrations of four analytes, including thiamethoxam, difenoconazole, carbendazim and prochloraz, exceeded the maximum residue level set by the Chinese government for rapeseed, with exceedance rates of 0.1%, 0.1%, 0.1%, and 1.1%, respectively. Based on the index of quality for residues (IqR) values, 91.6% of the total rapeseed samples had an IqR category of Excellent (IqR = 0). Only 1.5% of the tested samples were of inadequate quality. Furthermore, the assessment of chronic and acute exposure, as well as health risks associated with pesticide residues in rapeseed, was conducted for different age groups within the Chinese population, including adults (6-14 years), children (15-49 years), and the elderly (50-74 years). The results of this assessment indicated that pesticide residues in rapeseed cultivated in China are not expected to be of short- or long-term risks to the Chinese customers.
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  • 文章类型: Journal Article
    背景:油菜(BrassicanapusL.)是食用油和牲畜饲料的重要来源,以及有希望的生物燃料来源。育种具有理想的根系结构(RSA)以实现高磷利用效率(PUE)的作物是减少磷肥使用的有效途径。然而,支持油菜PUE的遗传机制仍然难以捉摸。为了解决这个问题,我们在327个油菜种质中进行了全基因组关联研究(GWAS),以阐明低磷(LP;0.01mMP)下13个根系和生物量性状的遗传变异性。此外,在控制和P胁迫条件下的两个时间点,在高/低磷有效组(HP1/LP1)和高/低磷胁迫耐受组(HP2/LP2)之间的根部进行了RNA测序。
    结果:在所有测量的性状中观察到显著差异,遗传力在0.47到0.72之间,并且大多数性状之间发现了显着的相关性。有39个显著的性状-SNP关联和31个暗示性关联,整合到11个有效的数量性状位点(QTL)簇,解释4.24-24.43%观察到的表型变异。总的来说,RNA-seq鉴定了在P胁迫和对照条件下对HP1/LP1和HP2/LP2特异的692、1076、648和934个差异表达基因(DEGs),分别,而在两种情况下,HP1/LP1和HP2/LP2共有761和860个DEG。GWAS的综合方法,加权共表达网络,差异表达分析确定了12个与LP胁迫下根系生长发育相关的基因。在这项研究中,六个基因(BnaA04g23490D,BnaA09g08440D,BnaA09g04320D,BnaA09g04350D,BnaA09g04930D,显示差异表达的BnaA09g09290D)被鉴定为目标性状的有希望的候选基因。
    结论:本研究确定了11个与LP胁迫下根系和发育相关的QTL簇和12个候选基因。我们研究的表型和遗传信息可用于根性状的遗传改良,以增加油菜的PUE。
    BACKGROUND: Rapeseed (Brassica napus L.) is an essential source of edible oil and livestock feed, as well as a promising source of biofuel. Breeding crops with an ideal root system architecture (RSA) for high phosphorus use efficiency (PUE) is an effective way to reduce the use of phosphate fertilizers. However, the genetic mechanisms that underpin PUE in rapeseed remain elusive. To address this, we conducted a genome-wide association study (GWAS) in 327 rapeseed accessions to elucidate the genetic variability of 13 root and biomass traits under low phosphorus (LP; 0.01 mM P +). Furthermore, RNA-sequencing was performed in root among high/low phosphorus efficient groups (HP1/LP1) and high/low phosphorus stress tolerance groups (HP2/LP2) at two-time points under control and P-stress conditions.
    RESULTS: Significant variations were observed in all measured traits, with heritabilities ranging from 0.47 to 0.72, and significant correlations were found between most of the traits. There were 39 significant trait-SNP associations and 31 suggestive associations, which integrated into 11 valid quantitative trait loci (QTL) clusters, explaining 4.24-24.43% of the phenotypic variance observed. In total, RNA-seq identified 692, 1076, 648, and 934 differentially expressed genes (DEGs) specific to HP1/LP1 and HP2/LP2 under P-stress and control conditions, respectively, while 761 and 860 DEGs common for HP1/LP1 and HP2/LP2 under both conditions. An integrated approach of GWAS, weighted co-expression network, and differential expression analysis identified 12 genes associated with root growth and development under LP stress. In this study, six genes (BnaA04g23490D, BnaA09g08440D, BnaA09g04320D, BnaA09g04350D, BnaA09g04930D, BnaA09g09290D) that showed differential expression were identified as promising candidate genes for the target traits.
    CONCLUSIONS: 11 QTL clusters and 12 candidate genes associated with root and development under LP stress were identified in this study. Our study\'s phenotypic and genetic information may be exploited for genetic improvement of root traits to increase PUE in rapeseed.
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  • 文章类型: Journal Article
    油料作物被广泛种植,并且作为具有有价值的生物学特性的有价值的营养和人类健康。对用于人类和动物营养或加工业的油料植物的需求不断增长,促进了油料作物新品种的多样化和发展。增加油料作物的多样性,除了确保降低对害虫和气候条件的敏感性,也提高了营养价值。为了使油料作物种植具有商业可持续性,对新创建的油料种子品种的全面表征,包括它们的营养和化学成分,是必需的。在这项研究中,研究了两种红花和白色和黑色芥末作为营养参数的替代油种,主要是蛋白质,脂肪,碳水化合物,水分,灰,多酚,黄酮类化合物,叶绿素含量,酸和矿物成分,并与作为传统油料作物的两种不同基因型的油菜籽进行了比较。近似分析发现,油菜NSSvetlana基因型的含油量最高(33.23%),而最低的是黑芥末(25.37%)。蛋白质含量从红花样品的26%到34.63%不等,在白芥末中确定。在分析样品中观察到高含量的不饱和脂肪酸和低含量的饱和脂肪酸。在矿物分析中,主要元素是磷,钾,钙和镁,按降序排列。观察到的油料作物也是微量元素的良好来源,包括铁,铜,锰和锌,由于存在大量的多酚和类黄酮化合物,因此具有高抗氧化活性。
    Oilseed crops are widely cultivated and are related to nutrition and human health as valuable nutraceutical sources with valuable biological properties. The growing demand for oil plants used in human and animal nutrition or for the processing industry has contributed to the diversification and development of a new variety of oil crops. Increased oil crop diversity, besides ensuring reduced sensitivity to pests and climate conditions, has also led to improved nutritional values. In order to enable oil crop cultivation to become commercially sustainable, a comprehensive characterization of newly created varieties of oilseeds, including their nutritional and chemical composition, is required. In this study, two varieties of safflower and white and black mustard were investigated as alternative oil species for nutritional parameters, mainly protein, fat, carbohydrate, moisture, ash, polyphenols, flavonoids, chlorophylls contents, acids and mineral composition, and compared with those of two different genotypes of rapeseeds as a traditional oil crop plant. The proximate analysis found that the highest oil content was found in the oil rape NS Svetlana genotype (33.23%), while the lowest was in black mustard (25.37%). The protein content varies from around 26% in safflower samples to 34.63%, determined in white mustard. High content of unsaturated fatty acids and low content of saturated fatty acid was observed in the analyzed samples. In mineral analysis, the dominant elements were phosphorus, potassium, calcium and magnesium, in descending order. The observed oil crops are also good sources of microelements, including iron, copper, manganese and zinc, accompanied by high antioxidant activity due to the presence of significant amounts of polyphenolic and flavonoid compounds.
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  • 文章类型: Journal Article
    这项研究的目的是提高油菜(甘蓝型油菜亚种。napusL.),肉豆蔻(MyriophyllumspicatumL.)spicatum和苜蓿(MedicagosativaL.),减少资源浪费和环境污染。在这个实验中,分析了不同比例的菜籽和苜蓿混合青贮对发酵和营养品质的影响,并利用糖蜜和尿素进一步改善了混合青贮的品质。根据3:7、5:5和7:3的比例,分别用苜蓿和M.spicatum青贮油菜。混合青贮60天后,通过对发酵指标和营养成分的测定,探索混合青贮的适宜配比。菜籽和苜蓿的混合比例为3:7:NH3-N/TN含量(4.61%),乳酸(96.46g·kg-1干物质[DM])显著升高(p<0.05)。粗蛋白含量(118.20g·kg-1DM)最高(p<0.05),当油菜籽和M.spicatum的混合比为7:3时,pH(4.56)最低。考虑到发酵和营养质量,建议将油菜和苜蓿以3:7的比例与3%的糖蜜和0.3%的尿素混合作为青贮,和油菜籽和M.spicatum应作为青贮饲料以7:3的比例与3%的糖蜜混合。
    The objective of this study was to improve the comprehensive rate of utilization of rapeseed (Brassica napus subsp. napus L.), Myriophyllum (Myriophyllum spicatum L.) spicatum and alfalfa (Medicago sativa L.), reduce resource waste and environmental pollution. In this experiment, the effects of different proportions of the mixed silage of rapeseed and alfalfa or M. spicatum on the fermentation and nutritional quality were analyzed and further improved the quality of mixed silage using molasses and urea. Rapeseed was separately silaged with alfalfa and M. spicatum based on the ratios of 3:7, 5:5 and 7:3. After 60 days of mixed silage, the fermentation index and nutrient contents were measured to explore the appropriate ratio of mixed silage. The mixing ratio of rapeseed and alfalfa was better at 3:7: The contents of NH3-N/TN (4.61%), lactic acid (96.46 g·kg-1 dry matter [DM]) were significantly higher (p < 0.05). The crude protein content (118.20 g·kg-1 DM) was the highest (p < 0.05), while the pH (4.56) was the lowest when the mixing ratio of rapeseed and M. spicatum was 7:3. Considering the fermentation and nutrition quality, it is suggested that rapeseed and alfalfa should be mixed as silage at a ratio of 3:7 with 3% molasses and 0.3% urea, and rapeseed and M. spicatum should be mixed as silage at a ratio of 7:3 with 3% molasses.
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  • 文章类型: Journal Article
    褪黑激素(M)是一种多效分子,可改善植物生长并增加重金属耐受性。M对提高镉(Cd)胁迫下植物生长和耐受性的作用,和减轻Cd诱导的毒性尚未得到充分研究。因此,在这里,我们进行了温室实验,以探讨不同M剂量对高Cd含量(30mgkg-1)下甘蓝型油菜的Cd解毒和胁迫耐受性响应的影响。已经使用各种生长属性研究了M对油菜植物中Cd耐受性调节的影响,Cd积累和耐性指数,和次级代谢参数。我们发现Cd胁迫抑制了根系生长(11.9%)以及触发的活性氧积累(31.2%)和MDA水平(18.7%);但是,外源M通过降低H2O2水平(38.7%)大大减轻了氧化应激的不利影响,Cd胁迫植物的MDA(13.8%)和EL(1.8%),与M-未处理的植物(对照)相比。有趣的是,外源M降低了根中Cd的积累(〜48.2-58.3倍),与对照植物相比,茎(~2.9-5.0倍)和叶(~4.7-6.6倍),这可能是由于M诱导的防御和/或解毒反应涉及一系列抗氧化剂。总的来说,相对于对照植物,向受Cd胁迫的植物中添加外源M极大地增强了油菜的Cd耐受性。这些结果表明M在促进生长方面的生物刺激作用(在生理和分子水平上)。Cd耐受性,和油菜中的镉解毒,表明M对Cd污染土壤的绿色修复潜力。该绿色试验将为Cd胁迫下污染土壤可再生能源作物的生产提供参考。然而,这些建议应在野外条件下进行验证,并应明确探索Cd和M之间相互作用的潜在机制。
    Melatonin (M) is a pleiotropic molecule that improves plant growth and increases heavy metal tolerance. The role of M for improving plant growth and tolerance under cadmium (Cd) stress, and mitigation of Cd-induced toxicity has not yet been sufficiently examined. Therefore, here we conducted a glasshouse experiment to explore the influence of various M dosages on Cd detoxification and stress-tolerance responses of Brassica napus under high Cd content (30 mg kg-1). The effects of M on the modulation of Cd tolerance in B. napus plants have been investigated using various growth attributes, Cd accumulation and tolerance indices, and secondary metabolic parameters. We found that Cd stress inhibited root growth (by 11.9%) as well as triggered reactive oxygen species accumulation (by 31.2%) and MDA levels (by 18.7%); however, exogenous M substantially alleviated the adverse effect of oxidative stress by decreasing levels of H2O2 (by 38.7%), MDA (by 13.8%) and EL (by 1.8%) in the Cd-stressed plants, as compared to the M-untreated plants (control). Interestingly, exogenous M reduced Cd accumulation in roots (∼48.2-58.3-fold), stem (∼2.9-5.0-fold) and leaves (∼4.7-6.6-fold) compared to control plants, which might be due to an M-induced defense and/or detoxification response involving a battery of antioxidants. Overall, addition of the exogenous M to the Cd-stressed plants profoundly enhanced Cd tolerance in B. napus relative to control plants. These results suggested the biostimulatory role (at the physiological and molecular level) of M in improving growth, Cd tolerance, and Cd detoxification in B. napus, which indicate the potentiality of M for green remediation of Cd contaminated soils. This green trial would provide a reference for producing renewable bioenergy crops under Cd stress in contaminated soils. However, these recommendations should be verified under field conditions and the potential mechanisms for the interaction between Cd and M should be explicitly explored.
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  • 文章类型: Journal Article
    目标:与种子油摄入相关的感知益处和风险仍然存在争议,研究了摄入对一系列用作心脏代谢标志物的化合物的影响。这项研究旨在探索英国常用种子油的蛋白质组学和心脏代谢作用,具有不同的脂肪酸谱。
    方法:在平行随机对照设计中,健康成人(n=84),25-72岁的超重或肥胖患者被随机分为三组:对照组(习惯性饮食,CON);每天20毫升菜籽油(RO),或20毫升葵花籽油每天(SO)。血,在第0、6和12周获得斑点尿液和人体测量。使用毛细管电泳耦合质谱(CE-MS)对冠状动脉疾病(CAD)和慢性肾病(CKD)进行蛋白质组生物标志物分析。血脂,空腹血糖,还分析了糖化/氧化应激和炎症标志物。
    结果:对于CAD或CKD肽指纹评分,组间没有观察到时间点之间的变化差异。在CAD或CKD评分的组内未检测到变化。在第6周或第12周,两组之间的次要结局没有观察到可检测到的差异,除了中位数8-异前列腺素,与RO和CON组相比,SO组12周后高出约50%(p=0.03)。
    结论:在超重或肥胖患者中,用RO或SO替代习惯性脂肪12周并不会导致心血管健康指标的改善或恶化。
    背景:试验注册clinicaltrials.govNCT04867629,回顾性注册30/04/2021。
    OBJECTIVE: The perceived benefits and risks associated with seed oil intake remain controversial, with a limited number of studies investigating the impact of intake on a range of compounds used as cardiometabolic markers. This study aimed to explore the proteomic and cardiometabolic effects of commonly consumed seed oils in the UK, with different fatty acid profiles.
    METHODS: In a parallel randomised control design, healthy adults (n = 84), aged 25-72 with overweight or obesity were randomised to one of three groups: control (habitual diet, CON); 20 mL rapeseed oil per day (RO), or 20 mL sunflower oil per day (SO). Blood, spot urine and anthropometric measures were obtained at 0, 6 and 12 weeks. Proteomic biomarkers analysis was conducted for coronary arterial disease (CAD) and chronic kidney disease (CKD) using capillary electrophoresis coupled to mass spectrometry (CE-MS). Blood lipids, fasting blood glucose, glycative/oxidative stress and inflammatory markers were also analysed.
    RESULTS: No differences in change between time points were observed between groups for CAD or CKD peptide fingerprint scores. No change was detected within groups for CAD or CKD scores. No detectable differences were observed between groups at week 6 or 12 for the secondary outcomes, except median 8-isoprostane, ~ 50% higher in the SO group after 12-weeks compared to RO and CON groups (p = 0.03).
    CONCLUSIONS: The replacement of habitual fat with either RO or SO for 12 weeks does not lead to an improvement or worsening in cardiovascular health markers in people with overweight or obesity.
    BACKGROUND: Trial registration clinicaltrials.gov NCT04867629, retrospectively registered 30/04/2021.
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  • 文章类型: Journal Article
    建议对生物炭进行改良,以提高土壤肥力和作物产量。然而,综合信息缺乏解释生物炭对土壤和植物酶活性的作用,这些酶活性参与土壤中的养分循环和植物中的积累,从而改善了施用的无机肥料的利用率和作物的生长。在目前的研究中,我们评估了生物炭水平(B0:0,B15:15,B3:30和B60:60tha-1)和氮肥水平(N0:0,N75:75,N225:225和N450:450kgha-1)对土壤理化性质的整体影响,酶活性,2020年和2021年盆栽2年油菜氮素利用效率(NUE)和籽粒产量。研究结果表明,与对照(B0+N0)相比,B30+N450的组合使土壤脲酶活性增加了73%和75%,B60+N450使土壤过氧化氢酶活性增加17%和16%,和B60+N225增加17和19%的碱性磷酸酶,分别,第一年和第二年。此外,在450kgha-1时单次施用高氮降低了植物氮代谢相关酶的活性,然而,30tha-1的生物炭整合补偿了高氮毒性,提高了硝酸还原酶(NR)的活性,亚硝酸还原酶NIR,幼苗期(SS)和开花期(FS)的谷氨酸合成酶(GS)和谷氨酰胺合成酶(GOGAT)。30tha-1的生物炭与450kgha-1的氮的整合通过吸收土壤中过量的氮对油菜生长产生协同作用,并显着提高了株高11%和18%。豆荚植物-139和32%,谷物产量植物-154和64%,分别,在第一年和第二年。此外,15tha-1的生物炭以及225kgha-1的氮在这两年中的NUE最高为29%,这表明生物炭也可以抵消低氮的缺乏。这项研究强调了生物炭通过改善土壤条件来提高氮素利用效率,从而抑制高氮毒性并降低氮素缺乏对油菜生长的影响。酶活性和土壤氮利用潜力,从而提高油菜生长和产量。
    The amendment of biochar has been proposed to improve soil fertility and crop yield. However, consolidated information lacks explaining the role of biochar on soil and plant enzymatic activities involved in nutrients cycling in soil and accumulation in plants improving utilization of applied inorganic fertilizer and crop growth. In the current study, we evaluated the integral effects of biochar levels (B0:0, B15:15, B3:30, and B60:60 t ha-1) and nitrogen fertilizer levels (N0:0, N75:75, N225:225, and N450:450 kg ha-1) on soil physicochemical properties, enzymatic activities, nitrogen use efficiency (NUE) and grain yield of rapeseed for 2 years in the pots during 2020 and 2021. The findings revealed that compared to control (B0 + N0), a combination of B30 + N450 increased soil urease activity by 73 and 75%, and B60 + N450 increased activities of soil catalase by 17 and 16%, and B60 + N225 increased alkaline phosphatase by 17 and 19%, respectively, in the first and second year. Moreover, a single application of high nitrogen at 450 kg ha-1 reduced the activities of plant nitrogen metabolism-related enzymes, however; the integration of biochar at 30 t ha-1 compensated the high nitrogen toxicity and improved the activities of nitrate reductase (NR), nitrite reductase NIR, glutamate synthase (GS) and glutamine synthetase (GOGAT) at seedling stage (SS) and flowering stage (FS) in both years. The integration of biochar at 30 t ha-1 with nitrogen at 450 kg ha-1 induced synergetic effects on rapeseed growth through sorption of excessive nitrogen in soil and significantly improved the plant height up to 11 and 18%, pods plant-1 39 and 32% and grain yield plant-1 54 and 64%, respectively, during the first and second year. Moreover, biochar at 15 t ha-1 along with nitrogen at 225 kg ha-1 resulted in the highest NUE of 29% in both years suggesting that biochar can also offset the deficiency of lower nitrogen. This study highlighted the ameliorative effect of biochar suppressing high nitrogen toxicity and decreasing lower nitrogen deficiency effects on rapeseed growth by improving nitrogen use efficiency via enhancing soil conditions, enzymatic activities and soil nitrogen utilization potential and thus improving rapeseed growth and yield.
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  • 文章类型: Journal Article
    Among several mechanisms involved in the plant stress response, synthesis of guanosine tetra and pentaphosphates (alarmones), homologous to the bacterial stringent response, is of crucial importance. Plant alarmones affect, among others, photosynthetic activity, metabolite accumulation, and nutrient remobilization, and thus regulate plant growth and development. The plant RSH (RelA/SpoT homolog) genes, that encode synthetases and/or hydrolases of alarmones, have been characterized in a limited number of plant species, e.g., Arabidopsis thaliana, Oryza sativa, and Ipomoea nil. Here, we used dry-to-wet laboratory research approaches to characterize RSH family genes in the polyploid plant Brassica napus. There are 12 RSH genes in the genome of rapeseed that belong to four types of RSH genes: 6 RSH1, 2 RSH2, 3 RSH3, and 1 CRSH. BnRSH genes contain 13-24 introns in RSH1, 2-6 introns in RSH2, 1-6 introns in RSH3, and 2-3 introns in the CRSH genes. In the promoter regions of the RSH genes, we showed the presence of regulatory elements of the response to light, plant hormones, plant development, and abiotic and biotic stresses. The wet-lab analysis showed that expression of BnRSH genes is generally not significantly affected by salt stress, but that the presence of PGPR bacteria, mostly of Serratia sp., increased the expression of BnRSH significantly. The obtained results show that BnRSH genes are differently affected by biotic and abiotic factors, which indicates their different functions in plants.
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  • 文章类型: Journal Article
    BACKGROUND: In terms of global demand, rapeseed is the third-largest oilseed crop after soybeans and palm, which produces vegetable oil for human consumption and biofuel for industrial production. Roots are vital organs for plant to absorb water and attain mineral nutrients, thus they are of great importance to plant productivity. However, the genetic mechanisms regulating root development in rapeseed remain unclear. In the present study, seven root-related traits and shoot biomass traits in 280 Brassica napus accessions at five continuous vegetative stages were measured to establish the genetic basis of root growth in rapeseed.
    RESULTS: The persistent and stage-specific genetic mechanisms were revealed by root dynamic analysis. Sixteen persistent and 32 stage-specific quantitative trait loci (QTL) clusters were identified through genome-wide association study (GWAS). Root samples with contrasting (slow and fast) growth rates throughout the investigated stages and those with obvious stage-specific changes in growth rates were subjected to transcriptome analysis. A total of 367 differentially expressed genes (DEGs) with persistent differential expressions throughout root development were identified, and these DEGs were significantly enriched in GO terms, such as energy metabolism and response to biotic or abiotic stress. Totally, 485 stage-specific DEGs with different expressions at specific stage were identified, and these DEGs were enriched in GO terms, such as nitrogen metabolism. Four candidate genes were identified as key persistent genetic factors and eight as stage-specific ones by integrating GWAS, weighted gene co-expression network analysis (WGCNA), and differential expression analysis. These candidate genes were speculated to regulate root system development, and they were less than 100 kb away from peak SNPs of QTL clusters. The homologs of three genes (BnaA03g52990D, BnaA06g37280D, and BnaA09g07580D) out of 12 candidate genes have been reported to regulate root development in previous studies.
    CONCLUSIONS: Sixteen QTL clusters and four candidate genes controlling persistently root development, and 32 QTL clusters and eight candidate genes stage-specifically regulating root growth in rapeseed were detected in this study. Our results provide new insights into the temporal genetic mechanisms of root growth by identifying key candidate QTL/genes in rapeseed.
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  • 文章类型: Journal Article
    Petal size determines the value of ornamental plants, and thus their economic value. However, the molecular mechanisms controlling petal size remain unclear in most non-model species. To identify quantitative trait loci and candidate genes controlling petal size in rapeseed (Brassica napus), we performed a genome-wide association study (GWAS) using data from 588 accessions over three consecutive years. We detected 16 significant single nucleotide polymorphisms (SNPs) associated with petal size, with the most significant SNPs located on chromosomes A05 and C06. A combination of GWAS and transcriptomic sequencing based on two accessions with contrasting differences in petal size identified 52 differentially expressed genes (DEGs) that may control petal size variation in rapeseed. In particular, the rapeseed gene BnaA05.RAP2.2, homologous to Arabidopsis RAP2.2, may be critical to the negative control of petal size through the ethylene signaling pathway. In addition, a comparison of petal epidermal cells indicated that petal size differences between the two contrasting accessions were determined mainly by differences in cell number. Finally, we propose a model for the control of petal size in rapeseed through ethylene and cytokinin signaling pathways. Our results provide insights into the genetic mechanisms regulating petal size in flowering plants.
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