Soil organic carbon (SOC) is in the focus of research due to its central role in regulating climate and maintaining fertility and resilience of soils. Methodologically, shifting from whole soil C measurements to specific SOC fractions increases possibility to detect small changes in the vast SOC storage, and enhances estimation of SOC stability. However, SOC fractionation schemes are numerous and variable. In this study, deionized water and sodium hexametaphosphate (SHMP) were compared in soil dispersion by separating soils into coarse (0.25-2 mm), medium (0.063-0.25 mm) and fine (<0.063 mm) size fractions. The first two fractions were further separated by density (1.8 g cm-3) to obtain free particulate organic C (POC) and mineral associated organic C (MOC). The approach was applied to a clay and a silt loam soil with and without wood fiber sludge amendment to follow the added C. Aggregate disruption was enhanced with SHMP in comparison to water, but the effect was small and the use of SHMP decreased recovery of SOC, wherefore water was preferred. In both soils, 5-10 % of SOC occurred as coarse POC, 1-3% as coarse MOC, 5 % as medium POC, 10 % as medium MOC, and 70-85 % as fine MOC. The added C resided in the POC fractions with an indication of minor accumulation to the fine MOC in the clay soil. Longer time frame with repeated C additions would be needed to increase the stable MOC storages though saturation of the MOC reserve may hinder accumulation in the silt loam low in fines.

A decline in the carbon content of agricultural soils has been reported globally. Amendments of forest industry side-streams might counteract this. We tested the effects of industrial conifer bark and its cascade process materials on the soil microbiome under barley (Hordeum vulgare L.) in clay and silt soil microcosms for 10 months, simulating the seasonal temperature changes of the boreal region. Microbial gene copy numbers were higher in clay soils than in silt. All amendments except unextracted bark increased bacterial gene copies in both soils. In turn, all other amendments, but not unextracted bark from an anaerobic digestion process, increased fungal gene copy numbers in silt soil. In clay soil, fungal increase occurred only with unextracted bark and hot water extracted bark. Soil, amendment type and simulated season affected both the bacterial and fungal community composition. Amendments increased bacteria originating from the anaerobic digestion process, as well as dinitrogen fixers and decomposers of plant cells. In turn, unextracted and hot water extracted bark determined the fungal community composition in silt. As fungal abundance increase and community diversification are related to soil carbon acquisition, bark-based amendments to soils can thus contribute to sustainable agriculture.

Tea plantation can cause strong soil degradation, e.g. acidification, basic nutrient decrease and microbial diversity loss, naturally by its root activity and secondary by practically tremendous synthetic N input. Organic amendments application is considered a practical way to mitigate the above adverse consequence. However, the trade-off between agronomic and environmental effects on the application of the organic amendments is still under debate. Herein, we conducted a long-term field experiment with four treatments, including control (without and fertiliser) (CK), chemical fertiliser treatment (CF), chicken manure treatment (CM) and chicken manure combined with biochar treatment (CMB) to investigate the effects of organic amendments application on soil quality, heavy metal contamination and tea production in a tea plantation. Totally 16 plots were arranged randomly with a completely randomised design. The results showed that CM and CMB treatments improved soil nutrient, mitigated soil acidification and ameliorated soil porosity compared to CF treatment. CMB treatment displayed a relatively high tea yield and quality in three consecutive years of monitoring. However, CM and CMB treatments elevated the heavy metal (HM) potential ecological risk (RI) and Nemerow\'s composite index (Ps). CM treatment significantly increased available As, Pb, Cu and Zn concentrations compared to CF treatment, while CMB treatment significantly decreased available Cr and Cu concentrations and slightly decreased available Cd, Pb and Ni concentrations compared to CM treatment. But the increase of available As and Zn in CMB treatment compared to CM treatment also indicated adverse effects of biochar addition. The PLS-PM model showed HM risk had direct negative effects on tea quality. Moreover, soil fungal community revealed positive effects on tea yield and negative effects on tea quality. Overall, our study proved that CMB treatment could improve soil quality, reduce available Cr and Ni concentrations, maintain tea yield and increase tea quality.

This study intended to elucidate the long-term effects of organic soil amendments on bacterial co-occurrence in bulk soil with and without addition of mineral fertiliser. Previous research mostly neglected the bacterial co-occurrence structure and focussed mainly on the parameters species diversity and abundance changes of species. Here we present a systematic comparison of two frequently used soil amendments, manure and straw, with regard to their impact on bacterial co-occurrence in a long-term field trial in Speyer, Germany. The approach involved 16S amplicon sequencing in combination with a bacterial network analysis, comparing the different fertiliser regimes. The results show an increase of bacterial diversity as well as an accumulation of bacteria of the order Bacillales in plots fertilised with manure compared to a control treatment. In the straw-amended plots neither an increase in diversity was found nor were indicative species detectable. Furthermore, network analysis revealed a clear impact of mineral fertiliser addition on bacterial co-occurrence structure. Most importantly, both organic amendments increased network complexity irrespective of mineral fertilisation regime. At the same time, the effects of manure and straw exhibited differences that might be explained by differences in their nutritional/chemical contents. It is concluded that bacterial interactions are a crucial parameter for the assessment of amendment effects regarding soil health and sustainability.

A barley field trial supplemented with bulky organic soil amendments, municipal compost or bovine slurry was sampled for Escherichia coli to test the hypothesis that E. coli isolated from the soil or from barley plants were derived from bovine slurry. A qualitative analysis showed that a total of 12% of the bulk soil cores and 16% of harvested grain samples yielded E. coli. The strongest association for positive detection of E. coli from soil was with time of year and for slurry-treated plots, with irrigation. However, E. coli were detected in plots from all treatment types and not exclusively associated with bovine slurry. Phylogroup, plasmid profiling and population genetics analysis (multilocus sequence typing) revealed extensive genetic diversity. Identical sequence types for slurry and soil isolates were detected, indicative of direct transfer into the soil, although not frequently. Host interaction assays with selected isolates showed a variation in the ability to colonize barley roots, but not in interactions with bovine cells. The work has implications in appropriate use of E. coli as a faecal indicator as isolates were widespread and diverse, reinforcing the view that some are a natural part of the microflora in agricultural systems.
CONCLUSIONS: Faecal deposition is considered to be the main process that introduces Escherichia coli into soil, giving rise to their use as a faecal indication species and the potential for cycling pathogens in agricultural systems. We found that bovine slurry was not the main source of E. coli in a barley trial and a high degree of diversity was present in the collection. The findings support the hypothesis that the population structure of E. coli in secondary habitats is shaped by the environment and highlight the drawbacks of its use as a faecal indicator species.