epidemic modelling

流行病建模
  • 文章类型: Journal Article
    背景:COVID-19在香港的“第三波”,中国受到非药物干预(NPI)的压制。尽管社会距离条例很快得到加强,疫情持续增长,导致跟踪和测试的延迟增加。出台了进一步的规定,加上针对风险群体的“目标测试”服务。估计单个NPI的影响可以提供有关如何在没有彻底封锁的情况下控制疫情的经验教训。然而,确认时间的不断变化的延迟对当前的建模方法提出了挑战。我们使用了一种新的方法,旨在解开和量化个人干预的效果。
    方法:我们将跟踪和测试中延迟的原因(即负载-效率关系)以及此类延迟的后果(即未跟踪案例的比例和具有确认延迟的跟踪案例的比例)纳入确定性传输模型,适用于每天有和没有epi-link的病例数(表明已进行了联系追踪)。然后计算每个NPI的效果。
    结果:该模型估计,在较早放松法规之后,Re从0.7升至3.2。由于联系人追踪系统的负载导致确认延迟增加,因此恢复社交距离仅将Re降低到1.3。然而,Re在引入针对性测试后减少了20.3%,在扩展面罩规则后减少了17.5%,将Re降至0.9,抑制疫情。没有结合延迟的模型的输出未能捕获传输和Re的重要特征。
    结论:改变确认延迟对疾病传播和传播性的估计有显著影响。这导致了一个明确的建议,即应在爆发期间监控和缓解延迟,延迟动力学应纳入模型以评估NPI的影响。
    背景:香港城市大学和卫生医学研究基金。
    BACKGROUND: The \'third wave\' of COVID-19 in Hong Kong, China was suppressed by non-pharmaceutical interventions (NPIs). Although social distancing regulations were quickly strengthened, the outbreak continued to grow, causing increasing delays in tracing and testing. Further regulations were introduced, plus \'targeted testing\' services for at-risk groups. Estimating the impact of individual NPIs could provide lessons about how outbreaks can be controlled without radical lockdown. However, the changing delays in confirmation time challenge current modelling methods. We used a novel approach aimed at disentangling and quantifying the effects of individual interventions.
    METHODS: We incorporated the causes of delays in tracing and testing (i.e. load-efficiency relationship) and the consequences from such delays (i.e. the proportion of un-traced cases and the proportion of traced-cases with confirmation delay) into a deterministic transmission model, which was fitted to the daily number of cases with and without an epi‑link (an indication of being contact-traced). The effect of each NPI was then calculated.
    RESULTS: The model estimated that after earlier relaxation of regulations, Re rose from 0.7 to 3.2. Restoration of social distancing to the previous state only reduced Re to 1.3, because of increased delay in confirmation caused by load on the contact-tracing system. However, Re decreased by 20.3% after the introduction of targeted testing and by 17.5% after extension of face-mask rules, reducing Re to 0.9 and suppressing the outbreak. The output of the model without incorporation of delay failed to capture important features of transmission and Re.
    CONCLUSIONS: Changing delay in confirmation has a significant impact on disease transmission and estimation of transmissibility. This leads to a clear recommendation that delay should be monitored and mitigated during outbreaks, and that delay dynamics should be incorporated into models to assess the effects of NPIs.
    BACKGROUND: City University of Hong Kong and Health and Medical Research Fund.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    背景鉴于其高昂的经济和社会成本,政策制定者可能不愿在冠状病毒病(COVID-19)疫情反弹的情况下实施大规模封锁。如果替代控制措施无法减少传播,他们可能会将其视为最后的选择。我们开发了一个建模框架,以确定封锁的使用,以确保重症监护病房(ICU)的容量不超过政策制定者定义的峰值目标。方法我们使用确定性隔室模型描述严重急性呼吸道综合征冠状病毒2(SARS-CoV-2)的传播和COVID-19患者在医疗机构中的轨迹,考虑特定年龄的混合模式和随年龄增加的严重结局的可能性。该框架在法国大都市的背景下进行了说明。结果ICU入院的每日发生率和ICU床位的占用数量是决定何时应触发封锁的最有力指标。当封锁前估计的住院时间为8到20天时,当ICU入院人数达到3.0-3.7和7.8-9.5/百万时,应强制实施封锁,以达到每百万62和154ICU床位的峰值目标(法国大都市为4,000和10,000个床位),分别。在较早实施时,回到所需水平以下所需的锁定持续时间也较短。结论我们提供了简单的指标和触发器,以决定是否以及何时实施最后的封锁,以避免ICU饱和。这些指标可以支持连续COVID-19大流行波的计划和实时管理。
    BackgroundGiven its high economic and societal cost, policymakers might be reluctant to implement a large-scale lockdown in case of coronavirus disease (COVID-19) epidemic rebound. They may consider it as a last resort option if alternative control measures fail to reduce transmission.AimWe developed a modelling framework to ascertain the use of lockdown to ensure intensive care unit (ICU) capacity does not exceed a peak target defined by policymakers.MethodsWe used a deterministic compartmental model describing transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and the trajectories of COVID-19 patients in healthcare settings, accounting for age-specific mixing patterns and an increasing probability of severe outcomes with age. The framework is illustrated in the context of metropolitan France.ResultsThe daily incidence of ICU admissions and the number of occupied ICU beds are the most robust indicators to decide when a lockdown should be triggered. When the doubling time of hospitalisations estimated before lockdown is between 8 and 20 days, lockdown should be enforced when ICU admissions reach 3.0-3.7 and 7.8-9.5 per million for peak targets of 62 and 154 ICU beds per million (4,000 and 10,000 beds for metropolitan France), respectively. When implemented earlier, the lockdown duration required to get back below a desired level is also shorter.ConclusionsWe provide simple indicators and triggers to decide if and when a last-resort lockdown should be implemented to avoid saturation of ICU. These metrics can support the planning and real-time management of successive COVID-19 pandemic waves.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

公众号