epidemic modelling

流行病建模
  • 文章类型: Journal Article
    背景鉴于其高昂的经济和社会成本,政策制定者可能不愿在冠状病毒病(COVID-19)疫情反弹的情况下实施大规模封锁。如果替代控制措施无法减少传播,他们可能会将其视为最后的选择。我们开发了一个建模框架,以确定封锁的使用,以确保重症监护病房(ICU)的容量不超过政策制定者定义的峰值目标。方法我们使用确定性隔室模型描述严重急性呼吸道综合征冠状病毒2(SARS-CoV-2)的传播和COVID-19患者在医疗机构中的轨迹,考虑特定年龄的混合模式和随年龄增加的严重结局的可能性。该框架在法国大都市的背景下进行了说明。结果ICU入院的每日发生率和ICU床位的占用数量是决定何时应触发封锁的最有力指标。当封锁前估计的住院时间为8到20天时,当ICU入院人数达到3.0-3.7和7.8-9.5/百万时,应强制实施封锁,以达到每百万62和154ICU床位的峰值目标(法国大都市为4,000和10,000个床位),分别。在较早实施时,回到所需水平以下所需的锁定持续时间也较短。结论我们提供了简单的指标和触发器,以决定是否以及何时实施最后的封锁,以避免ICU饱和。这些指标可以支持连续COVID-19大流行波的计划和实时管理。
    BackgroundGiven its high economic and societal cost, policymakers might be reluctant to implement a large-scale lockdown in case of coronavirus disease (COVID-19) epidemic rebound. They may consider it as a last resort option if alternative control measures fail to reduce transmission.AimWe developed a modelling framework to ascertain the use of lockdown to ensure intensive care unit (ICU) capacity does not exceed a peak target defined by policymakers.MethodsWe used a deterministic compartmental model describing transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and the trajectories of COVID-19 patients in healthcare settings, accounting for age-specific mixing patterns and an increasing probability of severe outcomes with age. The framework is illustrated in the context of metropolitan France.ResultsThe daily incidence of ICU admissions and the number of occupied ICU beds are the most robust indicators to decide when a lockdown should be triggered. When the doubling time of hospitalisations estimated before lockdown is between 8 and 20 days, lockdown should be enforced when ICU admissions reach 3.0-3.7 and 7.8-9.5 per million for peak targets of 62 and 154 ICU beds per million (4,000 and 10,000 beds for metropolitan France), respectively. When implemented earlier, the lockdown duration required to get back below a desired level is also shorter.ConclusionsWe provide simple indicators and triggers to decide if and when a last-resort lockdown should be implemented to avoid saturation of ICU. These metrics can support the planning and real-time management of successive COVID-19 pandemic waves.
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  • 文章类型: Journal Article
    Dynamic transmission models of influenza are sometimes used in decision-making to identify which vaccination strategies might best reduce influenza-associated health burdens. Our goal was to use laboratory confirmed influenza cases to fit model parameters in an age-structured, two-type (influenza A/B) dynamic model of influenza. We compared the fitted model under two fitting methodologies: using longitudinal weekly case notification data versus using cross-sectional age-stratified cumulative case notification data. The longitudinal data came from a Canadian province (Ontario)whereasthecross-sectionaldatacamefromthenationallevel(allofCanada). Wefindthatthe longitudinal fitting method provides best fitting parameter sets that have a higher variance between the respective parameters in each set than the cross-sectional cumulative case method. Model predictions-particularly for influenza A-are very different for the two fitting methodologies under hypothetical vaccination scenarios that expand coverage in either younger age classes or older age classes: the cross-sectional method predicts much larger decreases in total cases under expanded vaccine coverage than the longitudinal method. Also, the longitudinal method predicts that vaccinating younger age groups yields greater declines in total cases than vaccinating older age groups, whereas the cross- sectional method predicts the opposite. We conclude that model predictions of vaccination impacts under different strategies may differ at national versus provincial levels. Finally, we discuss whether usinglongitudinalversuscross-sectionaldatainmodelfittingmaygeneratefurtherdifferencesinmodel predictions (above and beyond population-specific differences) and how such a hypothesis could be tested in future studies.
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  • 文章类型: Journal Article
    Haemophilus influenzae serotype b (Hib) has yet to be eliminated despite the implementation of routine infant immunization programs. There is no consensus regarding the number of primary vaccine doses and an optimal schedule for the booster dose. We sought to evaluate the effect of a booster dose after receiving the primary series on the long-term disease incidence.
    A stochastic model of Hib transmission dynamics was constructed to compare the long-term impact of a booster vaccination and different booster schedules after receiving the primary series on the incidence of carriage and symptomatic disease. We parameterized the model with available estimates for the efficacy of Hib conjugate vaccine and durations of both vaccine-induced and naturally acquired immunity.
    We found that administering a booster dose substantially reduced the population burden of Hib disease compared to the scenario of only receiving the primary series. Comparing the schedules, the incidence of carriage for a 2-year delay (on average) in booster vaccination was comparable or lower than that observed for the scenario of booster dose within 1 year after primary series. The temporal reduction of symptomatic disease was similar in the two booster schedules, suggesting no superiority of one schedule over the other in terms of reducing the incidence of symptomatic disease.
    The findings underscore the importance of a booster vaccination for continued decline of Hib incidence. When the primary series provides a high level of protection temporarily, delaying the booster dose (still within the average duration of protection conferred by the primary series) may be beneficial to maintain longer-term protection levels and decelerate the decline of herd immunity in the population.
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